Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

66188198 .. 66190825

Gene Structure 2628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGCCTTTCGGGTTAAAGAATGCAGGTGCCACTTATCAGCGACTTGTCAACTCCATGTTTGAGGAAGTTATCGGTACTATCATGGAGGTATACGTGGACGACATGCTGGTAAAAAGTTTAACTCCGGAGGATCATGTAGCCAACTTGTCAATCGTCTTCATCATCATATTGCGCAACGGGATGCGGCTTAACCCACAGAAATGCATCTTCGGGGTCGAGGCAGGAAGGTTTCTCGGGTACATCATTAGCCACAGGGGAATTGAGGCCAATCCAGAGAAGGTGCATGCTATATTAGACATGGTATCCCCAACCTACCGGAACGAGGTCCAATCTCTTATAGGCAAGGTGGCCGCCCTGTCAAGATTCATCTCCAGGCTGACGGACAAGTGTACTCCTTTCTTCAAATTGCTAAAAACTCATCACGTAGAGATGATAGCCTGGACAGCGGAGCACGAAGCTGCTTTCCTTGGCTTGAAGTCGTACTTGTCAGAGGTACCTCTACTCTACAAACCTGTTCCCGGAGAAATGCTTTACGTATATCTGGCGGCATCGTCAACTGCCGTGAGCTCAGTTCTGATTAGGAAAGACTCCGATTGCGAGTACCCAGTGTACTATGCTGGAAAAGGTTACACTGGTGCAGAATCCAAGTACCCGGACATTGAAAAAGTAGCACTAGCTCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTTGGGGAAAGACTACAGCTAAGGTCAGCTGGATACATGATCATGAATGGCAAACTGTACAGGAGAGGGCATTGCTTCCCCAACCTGAAGTGTGTGACACCGGAGGAAGGTCACAAAATAATGAAGGACATTCACGCTGGTGTATGTGGTAACCATGCCGGAGCCCGATCTCTTGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCCTGGCTCAAACTATATCCGGTTCTTGCCACAAATGCCAAATGTACGCAAATATCCCACGGGCACCGCCCATCGCCCTTTCCATCCTCCTTGCACCATGGCCGTTCTGCCAGTGGGGTTTGGAATTGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAATACGCCATTGTTGCCGTGGACTACCAAACAAAGTGGGTAGAGGCAGAACCTCTCGTCGCCATCACCACGGAAAAGGTCAAGAGCTTCCTATGGAAGAACATCTACTGCAGGATCGGAGTCCCGGATACCATAGTCACGGACAATGGTACCCAGCTTGACAATGATGAGTTGAGGGCTTACACACAGAACCTGGGCACTAAGATCTTCTATGCTTCCCCGACTCACCCCCAGACCAACGGTCAGGTCGAAGCTGTCAACAAGATAATCAAGAAAATACTGAAAACGAAACTTGATGAAGCCAAGGGTCTTTGGGCTGCTAAACTCCCGGAGGTGTTGTGGGCTATCAGAACCACGGCAACGGAGGCCACCGGAGAGACCCCTTTCTGCATGGCTTTTGGATCAGAAGCAGTACTCCATATTGAAACACAAATCCAGAGTCCCCGGATCGAATACTTCGATGTGGGTACCAACTCAGAGGGCCTACACCTCGATGCTGATCTACTGGAGGAACGAAGAGATGTGGCACACATGCATAACTTGGCAAACAAGCGGAGGATAGCTCATTACTACGATGCCAAAGTGCAGTCCCGGACATTAAAGTTGGGGGACTGGGTCATGAAGCAAGTCTACCCAGAGCCCCGGGGACTGGATCCATCCTGGACAGGCCCTTACGAGATCATTGAAGAGATAGGTCCCGCAACCTTTTTCATACGGGATATGAACGGGGTCGTCTCCAAGCATCCATGGAATACCCAGCGCCTGCGGTACTATTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

657

Amino Acids

74.13

Weight (kDa)

8.94

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	1 - 82	2.7e-14	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	147 - 245	1.2e-18	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	176 - 272	9.7e-18	RNase H-like domain found in reverse transcriptase
Integrase_H2C2	PF17921	304 - 359	4.7e-07	Integrase zinc binding domain
rve	PF00665	395 - 474	3.3e-08	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	14
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	3 cut(s)	14, 748, 777
Acc65I	GGTACC	3 cut(s)	493, 1340, 1658
AccB1I	GGYRCC	5 cut(s)	26, 493, 1093, 1340, 1658
AccI	GTMKAC	2 cut(s)	90, 1821
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	8 cut(s)	184, 351, 446, 545, 1097, 1744, 1890, 1957
AclWI	GGATC	6 cut(s)	138, 1313, 1600, 1646, 1838, 1851
AcoI	YGGCCR	3 cut(s)	348, 1016, 1130
AcuI	CTGAAG	1 cut(s)	917
AfiI	CCNNNNNNNGG	4 cut(s)	322, 518, 917, 1840
AgsI	TTSAA	6 cut(s)	403, 475, 662, 1192, 1616, 1877
AhdI	GACNNNNNGTC	1 cut(s)	1431
AjnI	CCWGG	6 cut(s)	371, 437, 681, 1032, 1383, 1850
AleI	CACNNNNGTG	2 cut(s)	948, 1178
Alw21I	GWGCWC	2 cut(s)	453, 569
Alw26I	GTCTC	3 cut(s)	770, 1562, 1930
AlwI	GGATC	6 cut(s)	138, 1313, 1600, 1646, 1838, 1851
AlwNI	CAGNNNCTG	2 cut(s)	1384, 1954
Ama87I	CYCGRG	2 cut(s)	233, 1833
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	9 cut(s)	264, 348, 801, 1016, 1029, 1130, 1557, 1672, 1858
ApeKI	GCWGC	2 cut(s)	458, 1508
ArsI	GACNNNNNNTTYG	2 cut(s)	1615, 1647
Asp718I	GGTACC	3 cut(s)	493, 1340, 1658
AspLEI	GCGC	2 cut(s)	174, 1953
AspS9I	GGNCC	6 cut(s)	325, 801, 1030, 1672, 1859, 1886
AsuC2I	CCSGG	9 cut(s)	519, 653, 694, 1316, 1520, 1636, 1783, 1834, 1835
AsuHPI	GGTGA	4 cut(s)	721, 737, 1249, 1409
AvaI	CYCGRG	2 cut(s)	233, 1833
AvaII	GGWCC	2 cut(s)	325, 1886
AxyI	CCTNAGG	1 cut(s)	998
BaeGI	GKGCMC	2 cut(s)	1096, 1391
BaeI	ACNNNNGTAYC	4 cut(s)	1311, 1324, 1344, 1357
BalI	TGGCCA	1 cut(s)	1018
BamHI	GGATCC	1 cut(s)	1843
BanI	GGYRCC	5 cut(s)	26, 493, 1093, 1340, 1658
BanII	GRGCYC	3 cut(s)	569, 976, 1833
BarI	GAAGNNNNNNTAC	4 cut(s)	1280, 1312, 1805, 1837
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	453, 569
BbvI	GCAGC	2 cut(s)	445, 1495
BccI	CCATC	5 cut(s)	812, 1109, 1121, 1262, 1855
BceAI	ACGGC	4 cut(s)	545, 1117, 1193, 1563
BciT130I	CCWGG	6 cut(s)	373, 439, 683, 1034, 1385, 1852
BciVI	GTATCC	3 cut(s)	313, 836, 1312
BclI	TGATCA	1 cut(s)	849
BcnI	CCSGG	9 cut(s)	519, 653, 694, 1316, 1520, 1636, 1783, 1834, 1835
BcoDI	GTCTC	3 cut(s)	770, 1562, 1930
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	2 cut(s)	824, 1300
BfoI	RGCGCY	1 cut(s)	1954
BfuAI	ACCTGC	3 cut(s)	14, 748, 777
BfuI	GTATCC	3 cut(s)	313, 836, 1312
BglII	AGATCT	1 cut(s)	1395
BisI	GCNGC	5 cut(s)	185, 351, 459, 546, 1509
BlsI	GCNGC	5 cut(s)	186, 352, 460, 547, 1510
BmcAI	AGTACT	1 cut(s)	1605
Bme18I	GGWCC	2 cut(s)	325, 1886
BmeRI	GACNNNNNGTC	1 cut(s)	1431
BmeT110I	CYCGRG	2 cut(s)	233, 1833
BmgT120I	GGNCC	6 cut(s)	325, 801, 1030, 1672, 1859, 1886
BmiI	GGNNCC	8 cut(s)	28, 495, 973, 1095, 1342, 1660, 1845, 1888
BmrI	ACTGGG	2 cut(s)	599, 1813
BmsI	GCATC	6 cut(s)	171, 213, 557, 1675, 1756, 1942
BmuI	ACTGGG	2 cut(s)	599, 1813
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	1738, 1770
BpmI	CTGGAG	2 cut(s)	355, 1718
Bpu10I	CCTNAGC	1 cut(s)	830
BpuMI	CCSGG	9 cut(s)	519, 653, 694, 1316, 1520, 1636, 1783, 1834, 1835
BsaAI	YACGTR	3 cut(s)	94, 424, 535
BsaBI	GATNNNNATC	1 cut(s)	1689
BsaI	GGTCTC	1 cut(s)	1562
BsaWI	WCCGGW	5 cut(s)	124, 315, 910, 1049, 1562
BsaXI	ACNNNNNCTCC	4 cut(s)	663, 693, 1514, 1544
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 518, 917, 1840
Bse1I	ACTGG	6 cut(s)	605, 637, 1141, 1701, 1808, 1845
Bse21I	CCTNAGG	1 cut(s)	998
Bse3DI	GCAATG	1 cut(s)	880
Bse8I	GATNNNNATC	1 cut(s)	1689
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	6 cut(s)	373, 439, 683, 1034, 1385, 1852
BseGI	GGATG	4 cut(s)	186, 1113, 1847, 1933
BseJI	GATNNNNATC	1 cut(s)	1689
BseLI	CCNNNNNNNGG	4 cut(s)	322, 518, 917, 1840
BseMI	GCAATG	1 cut(s)	880
BseMII	CTCAG	3 cut(s)	582, 715, 1680
BseNI	ACTGG	6 cut(s)	605, 637, 1141, 1701, 1808, 1845
BseSI	GKGCMC	2 cut(s)	1096, 1391
BseXI	GCAGC	2 cut(s)	445, 1495
BseYI	CCCAGC	2 cut(s)	1344, 1947
BsgI	GTGCAG	2 cut(s)	657, 1796
BshFI	GGCC	9 cut(s)	266, 350, 803, 1018, 1031, 1132, 1559, 1674, 1860
BshNI	GGYRCC	5 cut(s)	26, 493, 1093, 1340, 1658
BsiHKAI	GWGCWC	2 cut(s)	453, 569
BsiHKCI	CYCGRG	2 cut(s)	233, 1833
BslFI	GGGAC	7 cut(s)	1197, 1298, 1617, 1765, 1814, 1851, 1872
BslI	CCNNNNNNNGG	4 cut(s)	322, 518, 917, 1840
BsmAI	GTCTC	3 cut(s)	770, 1562, 1930
BsmBI	CGTCTC	1 cut(s)	1930
BsmFI	GGGAC	7 cut(s)	1197, 1298, 1617, 1765, 1814, 1851, 1872
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	9 cut(s)	266, 350, 803, 1018, 1031, 1132, 1559, 1674, 1860
Bso31I	GGTCTC	1 cut(s)	1562
BsoBI	CYCGRG	2 cut(s)	233, 1833
Bsp1286I	GDGCHC	6 cut(s)	453, 569, 976, 1096, 1391, 1833
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	867
Bsp19I	CCATGG	2 cut(s)	1127, 1937
BspACI	CCGC	8 cut(s)	184, 351, 446, 545, 1097, 1744, 1890, 1957
BspANI	GGCC	9 cut(s)	266, 350, 803, 1018, 1031, 1132, 1559, 1674, 1860
BspCNI	CTCAG	3 cut(s)	581, 714, 1679
BspEI	TCCGGA	1 cut(s)	124
BspHI	TCATGA	2 cut(s)	852, 1809
BspLI	GGNNCC	8 cut(s)	28, 495, 973, 1095, 1342, 1660, 1845, 1888
BspMAI	CTGCAG	1 cut(s)	1304
BspMI	ACCTGC	3 cut(s)	14, 748, 777
BspPI	GGATC	6 cut(s)	138, 1313, 1600, 1646, 1838, 1851
BspT107I	GGYRCC	5 cut(s)	26, 493, 1093, 1340, 1658
BspTNI	GGTCTC	1 cut(s)	1562
BsrDI	GCAATG	1 cut(s)	880
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	6 cut(s)	605, 637, 1141, 1701, 1808, 1845
BssNAI	GTATAC	1 cut(s)	91
BssT1I	CCWWGG	4 cut(s)	466, 1127, 1494, 1937
Bst1107I	GTATAC	1 cut(s)	91
Bst2UI	CCWGG	6 cut(s)	373, 439, 683, 1034, 1385, 1852
Bst4CI	ACNGT	4 cut(s)	733, 867, 1188, 1433
Bst6I	CTCTTC	2 cut(s)	1702, 1872
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstAUI	TGTACA	1 cut(s)	867
BstBAI	YACGTR	3 cut(s)	94, 424, 535
BstC8I	GCNNGC	2 cut(s)	285, 1955
BstDEI	CTNAG	6 cut(s)	568, 701, 830, 998, 1392, 1666
BstDSI	CCRYGG	6 cut(s)	1088, 1127, 1209, 1260, 1545, 1937
BstEII	GGTNACC	1 cut(s)	959
BstF5I	GGATG	4 cut(s)	186, 1113, 1847, 1933
BstH2I	RGCGCY	1 cut(s)	1954
BstHHI	GCGC	2 cut(s)	174, 1953
BstMAI	GTCTC	3 cut(s)	770, 1562, 1930
BstMWI	GCNNNNNNNGC	5 cut(s)	443, 763, 1065, 1205, 1556
BstNI	CCWGG	6 cut(s)	373, 439, 683, 1034, 1385, 1852
BstNSI	RCATGY	3 cut(s)	106, 287, 1726
BstPI	GGTNACC	1 cut(s)	959
BstSFI	CTRYAG	2 cut(s)	824, 1300
BstSLI	GKGCMC	2 cut(s)	1096, 1391
BstSNI	TACGTA	1 cut(s)	535
BstV1I	GCAGC	2 cut(s)	445, 1495
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	1395, 1843
BstXI	CCANNNNNNTGG	1 cut(s)	1180
BstYI	RGATCY	2 cut(s)	1395, 1843
BstZ17I	GTATAC	1 cut(s)	91
Bsu36I	CCTNAGG	1 cut(s)	998
BsuI	GTATCC	3 cut(s)	313, 836, 1312
BsuRI	GGCC	9 cut(s)	266, 350, 803, 1018, 1031, 1132, 1559, 1674, 1860
BtgI	CCRYGG	6 cut(s)	1088, 1127, 1209, 1260, 1545, 1937
BtgZI	GCGATG	1 cut(s)	1087
BtsCI	GGATG	4 cut(s)	186, 1113, 1847, 1933
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	4 cut(s)	612, 630, 1148, 1185
BveI	ACCTGC	3 cut(s)	14, 748, 777
Cac8I	GCNNGC	2 cut(s)	285, 1955
CaiI	CAGNNNCTG	2 cut(s)	1384, 1954
CciI	TCATGA	2 cut(s)	852, 1809
CfoI	GCGC	2 cut(s)	174, 1953
Cfr13I	GGNCC	6 cut(s)	325, 801, 1030, 1672, 1859, 1886
Cfr9I	CCCGGG	1 cut(s)	1833
CspCI	CAANNNNNGTGG	2 cut(s)	1208, 1243
DdeI	CTNAG	6 cut(s)	568, 701, 830, 998, 1392, 1666
DriI	GACNNNNNGTC	1 cut(s)	1431
EaeI	YGGCCR	3 cut(s)	348, 1016, 1130
Eam1104I	CTCTTC	2 cut(s)	1702, 1872
Eam1105I	GACNNNNNGTC	1 cut(s)	1431
EarI	CTCTTC	2 cut(s)	1702, 1872
Ecl136II	GAGCTC	1 cut(s)	567
Eco105I	TACGTA	1 cut(s)	535
Eco130I	CCWWGG	4 cut(s)	466, 1127, 1494, 1937
Eco24I	GRGCYC	3 cut(s)	569, 976, 1833
Eco31I	GGTCTC	1 cut(s)	1562
Eco47I	GGWCC	2 cut(s)	325, 1886
Eco53kI	GAGCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	917
Eco81I	CCTNAGG	1 cut(s)	998
Eco88I	CYCGRG	2 cut(s)	233, 1833
Eco91I	GGTNACC	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	567
EcoO109I	RGGNCCY	3 cut(s)	1672, 1859, 1886
EcoO65I	GGTNACC	1 cut(s)	959
EcoRII	CCWGG	6 cut(s)	371, 437, 681, 1032, 1383, 1850
EcoT14I	CCWWGG	4 cut(s)	466, 1127, 1494, 1937
EcoT22I	ATGCAT	2 cut(s)	206, 1728
EcoT38I	GRGCYC	3 cut(s)	569, 976, 1833
ErhI	CCWWGG	4 cut(s)	466, 1127, 1494, 1937
Esp3I	CGTCTC	1 cut(s)	1930
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	7 cut(s)	1197, 1298, 1617, 1765, 1814, 1851, 1872
FauI	CCCGC	1 cut(s)	1897
FbaI	TGATCA	1 cut(s)	849
FblI	GTMKAC	2 cut(s)	90, 1821
Fnu4HI	GCNGC	5 cut(s)	185, 351, 459, 546, 1509
FokI	GGATG	4 cut(s)	193, 1100, 1834, 1920
FriOI	GRGCYC	3 cut(s)	569, 976, 1833
Fsp4HI	GCNGC	5 cut(s)	185, 351, 459, 546, 1509
FspBI	CTAG	1 cut(s)	674
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	2 cut(s)	173, 1952
GluI	GCNGC	5 cut(s)	185, 351, 459, 546, 1509
GsaI	CCCAGC	2 cut(s)	1348, 1951
GsuI	CTGGAG	2 cut(s)	355, 1718
HaeII	RGCGCY	1 cut(s)	1954
HaeIII	GGCC	9 cut(s)	266, 350, 803, 1018, 1031, 1132, 1559, 1674, 1860
HhaI	GCGC	2 cut(s)	174, 1953
Hin6I	GCGC	2 cut(s)	172, 1951
HinP1I	GCGC	2 cut(s)	172, 1951
HincII	GTYRAC	3 cut(s)	49, 555, 1450
HindII	GTYRAC	3 cut(s)	49, 555, 1450
HinfI	GANTC	6 cut(s)	363, 587, 641, 1311, 1414, 1630
HphI	GGTGA	4 cut(s)	721, 737, 1249, 1409
Hpy188I	TCNGA	8 cut(s)	490, 576, 592, 704, 1310, 1541, 1597, 1669
Hpy188III	TCNNGA	8 cut(s)	125, 272, 360, 853, 1273, 1462, 1627, 1810
Hpy99I	CGWCG	1 cut(s)	1253
HpyAV	CCTTC	4 cut(s)	219, 271, 911, 928
HpyCH4III	ACNGT	4 cut(s)	733, 867, 1188, 1433
HpyCH4IV	ACGT	3 cut(s)	93, 423, 534
HpyF10VI	GCNNNNNNNGC	5 cut(s)	443, 763, 1065, 1205, 1556
HpyF3I	CTNAG	6 cut(s)	568, 701, 830, 998, 1392, 1666
HpySE526I	ACGT	3 cut(s)	93, 423, 534
HspAI	GCGC	2 cut(s)	172, 1951
Kpn2I	TCCGGA	1 cut(s)	124
KpnI	GGTACC	3 cut(s)	497, 1344, 1662
Ksp22I	TGATCA	1 cut(s)	849
LmnI	GCTCC	2 cut(s)	448, 971
Lsp1109I	GCAGC	2 cut(s)	445, 1495
LweI	GCATC	6 cut(s)	171, 213, 557, 1675, 1756, 1942
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	3 cut(s)	93, 423, 534
MaeIII	GTNAC	5 cut(s)	626, 904, 920, 959, 1327
MboII	GAAGA	7 cut(s)	148, 199, 391, 1300, 1390, 1719, 1889
MflI	RGATCY	2 cut(s)	1395, 1843
MhlI	GDGCHC	6 cut(s)	453, 569, 976, 1096, 1391, 1833
MlsI	TGGCCA	1 cut(s)	1018
MluCI	AATT	4 cut(s)	258, 404, 792, 1154
MluNI	TGGCCA	1 cut(s)	1018
MlyI	GAGTC	4 cut(s)	581, 1320, 1408, 1639
Mox20I	TGGCCA	1 cut(s)	1018
Mph1103I	ATGCAT	2 cut(s)	206, 1728
MroI	TCCGGA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	1018
MseI	TTAA	6 cut(s)	14, 119, 189, 791, 795, 1790
MslI	CAYNNNNRTG	5 cut(s)	199, 851, 948, 1178, 1683
Msp20I	TGGCCA	1 cut(s)	1018
MspA1I	CMGCKG	2 cut(s)	446, 839
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	6 cut(s)	373, 439, 683, 1034, 1385, 1852
MwoI	GCNNNNNNNGC	5 cut(s)	443, 763, 1065, 1205, 1556
NciI	CCSGG	9 cut(s)	519, 653, 694, 1316, 1520, 1636, 1783, 1834, 1835
NcoI	CCATGG	2 cut(s)	1127, 1937
NlaIV	GGNNCC	8 cut(s)	28, 495, 973, 1095, 1342, 1660, 1845, 1888
NmuCI	GTSAC	3 cut(s)	904, 920, 1327
NsbI	TGCGCA	1 cut(s)	173
NsiI	ATGCAT	2 cut(s)	206, 1728
NspI	RCATGY	3 cut(s)	106, 287, 1726
OliI	CACNNNNGTG	2 cut(s)	948, 1178
PacI	TTAATTAA	1 cut(s)	795
PaeI	GCATGC	1 cut(s)	287
PagI	TCATGA	2 cut(s)	852, 1809
PaqCI	CACCTGC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	1437, 1647
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	363, 641
PflFI	GACNNNGTC	1 cut(s)	1805
PfoI	TCCNGGA	5 cut(s)	517, 1314, 1518, 1781, 1850
PkrI	GCNGC	5 cut(s)	186, 352, 460, 547, 1510
PleI	GAGTC	4 cut(s)	581, 1319, 1408, 1638
PpsI	GAGTC	4 cut(s)	581, 1319, 1408, 1638
Ppu21I	YACGTR	3 cut(s)	94, 424, 535
PpuMI	RGGWCCY	1 cut(s)	1886
Psp124BI	GAGCTC	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	1886
Psp6I	CCWGG	6 cut(s)	371, 437, 681, 1032, 1383, 1850
PspEI	GGTNACC	1 cut(s)	959
PspFI	CCCAGC	2 cut(s)	1344, 1947
PspGI	CCWGG	6 cut(s)	371, 437, 681, 1032, 1383, 1850
PspN4I	GGNNCC	8 cut(s)	28, 495, 973, 1095, 1342, 1660, 1845, 1888
PspPI	GGNCC	6 cut(s)	325, 801, 1030, 1672, 1859, 1886
PspPPI	RGGWCCY	1 cut(s)	1886
PstI	CTGCAG	1 cut(s)	1304
PstNI	CAGNNNCTG	2 cut(s)	1384, 1954
PsuI	RGATCY	2 cut(s)	1395, 1843
PsyI	GACNNNGTC	1 cut(s)	1805
PvuII	CAGCTG	1 cut(s)	839
RseI	CAYNNNNRTG	5 cut(s)	199, 851, 948, 1178, 1683
SacI	GAGCTC	1 cut(s)	569
SaqAI	TTAA	6 cut(s)	14, 119, 189, 791, 795, 1790
SatI	GCNGC	5 cut(s)	185, 351, 459, 546, 1509
Sau96I	GGNCC	6 cut(s)	325, 801, 1030, 1672, 1859, 1886
ScaI	AGTACT	1 cut(s)	1605
SchI	GAGTC	4 cut(s)	581, 1320, 1408, 1639
SduI	GDGCHC	6 cut(s)	453, 569, 976, 1096, 1391, 1833
SfaNI	GCATC	6 cut(s)	171, 213, 557, 1675, 1756, 1942
SfcI	CTRYAG	2 cut(s)	824, 1300
SinI	GGWCC	2 cut(s)	325, 1886
SmaI	CCCGGG	1 cut(s)	1835
SmiMI	CAYNNNNRTG	5 cut(s)	199, 851, 948, 1178, 1683
SnaBI	TACGTA	1 cut(s)	535
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	4 cut(s)	258, 404, 792, 1154
SsiI	CCGC	8 cut(s)	184, 351, 446, 545, 1097, 1744, 1890, 1957
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	569
StyI	CCWWGG	4 cut(s)	466, 1127, 1494, 1937
TaaI	ACNGT	4 cut(s)	733, 867, 1188, 1433
TaiI	ACGT	3 cut(s)	96, 426, 537
TaqI	TCGA	6 cut(s)	216, 807, 1440, 1641, 1650, 1683
TasI	AATT	4 cut(s)	258, 404, 792, 1154
TatI	WGTACW	4 cut(s)	389, 609, 867, 1603
TauI	GCSGC	3 cut(s)	187, 353, 548
TfiI	GAWTC	2 cut(s)	363, 641
Tru1I	TTAA	6 cut(s)	14, 119, 189, 791, 795, 1790
Tru9I	TTAA	6 cut(s)	14, 119, 189, 791, 795, 1790
TscAI	CASTG	4 cut(s)	612, 637, 1148, 1185
TseFI	GTSAC	3 cut(s)	904, 920, 1327
TseI	GCWGC	2 cut(s)	458, 1508
Tsp45I	GTSAC	3 cut(s)	904, 920, 1327
TspDTI	ATGAA	8 cut(s)	148, 355, 869, 947, 1503, 1826, 1891, 1928
TspGWI	ACGGA	4 cut(s)	395, 1277, 1346, 1568
TspMI	CCCGGG	1 cut(s)	1833
TspRI	CASTG	4 cut(s)	612, 637, 1148, 1185
Tth111I	GACNNNGTC	1 cut(s)	1805
VpaK11BI	GGWCC	2 cut(s)	325, 1886
XceI	RCATGY	3 cut(s)	106, 287, 1726
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1030, 1207
XmaI	CCCGGG	1 cut(s)	1833
XmiI	GTMKAC	2 cut(s)	90, 1821
XspI	CTAG	1 cut(s)	674
ZrmI	AGTACT	1 cut(s)	1605
Zsp2I	ATGCAT	2 cut(s)	206, 1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.