Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8413879.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 534

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8413879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

tcaaacaaagtggcggagtacgaagcgctcatcgctggcctactcctcaccatcgactcgggggccgacagcgtcaacatattaagtgactcccaggaaagaaactccaaagctgattcactagcaaggctagcaaccgctcaaccacaccaaagtccagcggacacaagggtggagtgtcttgacagacctagcaccacaaaaaccctagcagagatcttcaacattgaggtcaatcccagttggatgaataagatcatcgaatacaggcgtaagggaaagctgccagaggacaaggtagaagcaagacggctcatacggagggcaacccgctacaacatccagaatggaaagttttacctccaggggttcacccaccccaactttcggtgcctaaccccagaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

136

Amino Acids

15.43

Weight (kDa)

8.6

Isoelectric Point (pI)

74.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	390
AccBSI	CCGCTC	1 cut(s)	140
AciI	CCGC	4 cut(s)	14, 138, 161, 331
AfaI	GTAC	1 cut(s)	20
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	93, 363
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	113, 283
AluI	AGCT	2 cut(s)	113, 283
Ama87I	CYCGRG	1 cut(s)	58
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	2 cut(s)	37, 63
ApeKI	GCWGC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	40, 364
AsuNHI	GCTAGC	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	2 cut(s)	95, 365
BfaI	CTAG	4 cut(s)	122, 131, 192, 209
BfoI	RGCGCY	1 cut(s)	29
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	95, 365
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	64, 392
BmrFI	CCNGG	2 cut(s)	95, 365
BmrI	ACTGGG	1 cut(s)	234
BmtI	GCTAGC	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	93, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	95, 365
BseDI	CCNNGG	2 cut(s)	93, 364
BseGI	GGATG	2 cut(s)	252, 339
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	270
BshFI	GGCC	2 cut(s)	39, 65
BshNI	GGYRCC	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	387
BsnI	GGCC	2 cut(s)	39, 65
BsoBI	CYCGRG	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	216, 255
BspACI	CCGC	4 cut(s)	14, 138, 161, 331
BspANI	GGCC	2 cut(s)	39, 65
BspLI	GGNNCC	2 cut(s)	64, 392
BspOI	GCTAGC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	93, 364
BssMI	GATC	2 cut(s)	216, 255
Bst2UI	CCWGG	2 cut(s)	95, 365
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	37, 132
BstF5I	GGATG	2 cut(s)	252, 339
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	219, 258
BstMBI	GATC	2 cut(s)	216, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 131
BstNI	CCWGG	2 cut(s)	95, 365
BstSCI	CCNGG	2 cut(s)	93, 363
BstV1I	GCAGC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	39, 65
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	252, 339
Cac8I	GCNNGC	2 cut(s)	37, 132
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	63
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	19
CspCI	CAANNNNNGTGG	1 cut(s)	26
CviJI	RGCY	6 cut(s)	39, 65, 113, 130, 283, 313
CviKI_1	RGCY	6 cut(s)	39, 65, 113, 130, 283, 313
CviQI	GTAC	1 cut(s)	19
DpnI	GATC	2 cut(s)	218, 257
DpnII	GATC	2 cut(s)	216, 255
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	29
Eco47III	AGCGCT	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	93, 363
FaiI	YATR	2 cut(s)	80, 317
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	2 cut(s)	259, 326
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	4 cut(s)	122, 131, 192, 209
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	39, 65
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	3 cut(s)	56, 89, 116
HphI	GGTGA	2 cut(s)	40, 364
Hpy166II	GTNNAC	2 cut(s)	76, 372
Hpy188III	TCNNGA	2 cut(s)	182, 343
Hpy8I	GTNNAC	2 cut(s)	76, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 131
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	216, 255
Lsp1109I	GCAGC	1 cut(s)	270
MaeI	CTAG	4 cut(s)	122, 131, 192, 209
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	2 cut(s)	218, 257
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	2 cut(s)	216, 255
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	50, 83
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	56, 223, 283, 315, 371
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	95, 365
MvaI	CCWGG	2 cut(s)	95, 365
MwoI	GCNNNNNNNGC	2 cut(s)	32, 131
NdeII	GATC	2 cut(s)	216, 255
NheI	GCTAGC	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	64, 392
NmuCI	GTSAC	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	116
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	285
PleI	GAGTC	2 cut(s)	50, 83
PpsI	GAGTC	2 cut(s)	50, 83
Psp6I	CCWGG	2 cut(s)	93, 363
PspGI	CCWGG	2 cut(s)	93, 363
PspN4I	GGNNCC	2 cut(s)	64, 392
PspPI	GGNCC	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	216
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	216, 255
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	2 cut(s)	50, 83
ScrFI	CCNGG	2 cut(s)	95, 365
SetI	ASST	6 cut(s)	115, 193, 234, 285, 300, 363
SmiMI	CAYNNNNRTG	1 cut(s)	170
SsiI	CCGC	4 cut(s)	14, 138, 161, 331
SspMI	CTAG	4 cut(s)	122, 131, 192, 209
StyD4I	CCNGG	2 cut(s)	93, 363
TaqI	TCGA	2 cut(s)	54, 261
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	71
XspI	CTAG	4 cut(s)	122, 131, 192, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.