pycom07g08280

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000250
Physical Location & Seq
Reverse (-)
7668384 .. 7669103
720 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08280.2

Sequence Viewer

Length: 615 bp
ATGTTTGCTGAAGCTTCCAAGACACTTAATGTAGCTGAACACTTGCTCGATCACTCGGTTTCTCATCTGATAAGCTTCTCTGGTGATGTCGTGCAACCTTTAGGGAACGTACATTTACCTTTCACCATCGGTACAGGCCCGTACACAGCCACCATCACCACTAACTTCTTGGTGGTTGACTGCCCAACGACATACAATGTCATCTTTGGGCGCACAGGCATTAATGATCTCAAGGCCATGGTATCCACACATATGTTATTGATGAAATTTCCAACCCCCTATGGCAATGTTATCAAGACCAGCTCGGACAAAGCCAACTTGAATATTCACGGTGGTAACAATCAACCCGACGATCCTCGAGATGACTCTTTCACCCAGCAAGCACAACCTGCTGAAGAGTTGGAGAATGTCTCTATCTCAAAAGATTATCCAAATCGCATAGTGAAGATTGGCACCACTTTGTCACCACCCATTCGGTTGGCATCGATCTCTTTTTTGCAAGAGAACACTAAAGTCTTCGCCTGGTCATACGAGGCCATGCCAGGCATCTCTCCCGATATCATCTGTCATCACTTGAGCATTGATCCCAAGACCAAGCCAGTGAGACAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Retrotrans_gag

Protein Analysis

205

Amino Acids

22.43

Weight (kDa)

6.21

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 397
AccB1I GGYRCC 1 cut(s) 452
AclWI GGATC 2 cut(s) 347, 578
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 2 cut(s) 30, 414
AfaI GTAC 3 cut(s) 111, 133, 143
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 2 cut(s) 521, 541
AluBI AGCT 4 cut(s) 14, 35, 75, 303
AluI AGCT 4 cut(s) 14, 35, 75, 303
Alw26I GTCTC 2 cut(s) 415, 598
AlwI GGATC 2 cut(s) 347, 578
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 3 cut(s) 136, 234, 534
ApoI RAATTY 1 cut(s) 266
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 5 cut(s) 95, 115, 148, 364, 456
AvaI CYCGRG 1 cut(s) 357
BanI GGYRCC 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 508
BccI CCATC 2 cut(s) 134, 161
BciT130I CCWGG 2 cut(s) 523, 543
BciVI GTATCC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 415, 598
BfuAI ACCTGC 1 cut(s) 397
BfuI GTATCC 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 523, 543
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 523, 543
BmsI GCATC 2 cut(s) 491, 555
BpiI GAAGAC 1 cut(s) 508
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpuEI CTTGAG 2 cut(s) 215, 595
Bsa29I ATCGAT 1 cut(s) 485
BsaJI CCNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 599
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 2 cut(s) 523, 543
BseCI ATCGAT 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 237
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 375
BshFI GGCC 3 cut(s) 138, 236, 536
BshNI GGYRCC 1 cut(s) 452
BshVI ATCGAT 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 357
BsmAI GTCTC 2 cut(s) 415, 598
BsnI GGCC 3 cut(s) 138, 236, 536
BsoBI CYCGRG 1 cut(s) 357
Bsp143I GATC 5 cut(s) 49, 226, 352, 486, 583
Bsp19I CCATGG 1 cut(s) 237
BspANI GGCC 3 cut(s) 138, 236, 536
BspDI ATCGAT 1 cut(s) 485
BspLI GGNNCC 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 397
BspPI GGATC 2 cut(s) 347, 578
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 599
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 5 cut(s) 49, 226, 352, 486, 583
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 523, 543
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 5 cut(s) 52, 229, 355, 489, 586
BstMAI GTCTC 2 cut(s) 415, 598
BstMBI GATC 5 cut(s) 49, 226, 352, 486, 583
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstNI CCWGG 2 cut(s) 523, 543
BstSCI CCNGG 2 cut(s) 521, 541
BstV2I GAAGAC 1 cut(s) 508
BstXI CCANNNNNNTGG 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 485
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 3 cut(s) 138, 236, 536
BsuTUI ATCGAT 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 237
BtsIMutI CAGTG 1 cut(s) 606
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 485
Csp6I GTAC 3 cut(s) 110, 132, 142
CviAII CATG 2 cut(s) 238, 538
CviQI GTAC 3 cut(s) 110, 132, 142
DpnI GATC 5 cut(s) 51, 228, 354, 488, 585
DpnII GATC 5 cut(s) 49, 226, 352, 486, 583
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 237
Eco32I GATATC 1 cut(s) 559
Eco57I CTGAAG 2 cut(s) 30, 414
Eco88I CYCGRG 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 521, 541
EcoRV GATATC 1 cut(s) 559
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 2 cut(s) 241, 541
FaiI YATR 8 cut(s) 193, 239, 252, 254, 282, 440, 529, 539
FatI CATG 2 cut(s) 237, 537
FauNDI CATATG 1 cut(s) 252
GlaI GCGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 379
HaeIII GGCC 3 cut(s) 138, 236, 536
HhaI GCGC 1 cut(s) 213
Hin1II CATG 2 cut(s) 241, 541
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 2 cut(s) 12, 73
HinfI GANTC 1 cut(s) 365
HphI GGTGA 5 cut(s) 95, 115, 148, 364, 456
Hpy166II GTNNAC 2 cut(s) 144, 178
Hpy188I TCNGA 2 cut(s) 69, 307
Hpy188III TCNNGA 3 cut(s) 295, 359, 554
Hpy8I GTNNAC 2 cut(s) 144, 178
Hpy99I CGWCG 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 2 cut(s) 94, 499
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 241, 541
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 5 cut(s) 49, 226, 352, 486, 583
LweI GCATC 2 cut(s) 491, 555
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 335, 462
MalI GATC 5 cut(s) 51, 228, 354, 488, 585
MboI GATC 5 cut(s) 49, 226, 352, 486, 583
MboII GAAGA 3 cut(s) 407, 457, 508
MluCI AATT 1 cut(s) 266
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 296, 381
MnlI CCTC 2 cut(s) 366, 526
MseI TTAA 2 cut(s) 27, 222
MslI CAYNNNNRTG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 523, 543
MvaI CCWGG 2 cut(s) 523, 543
MwoI GCNNNNNNNGC 1 cut(s) 389
NcoI CCATGG 1 cut(s) 237
NdeI CATATG 1 cut(s) 252
NdeII GATC 5 cut(s) 49, 226, 352, 486, 583
NlaIII CATG 2 cut(s) 241, 541
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 462
PaeR7I CTCGAG 1 cut(s) 357
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 521, 541
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 521, 541
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 137
RsaI GTAC 3 cut(s) 111, 133, 143
RsaNI GTAC 3 cut(s) 110, 132, 142
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 2 cut(s) 27, 222
Sau3AI GATC 5 cut(s) 49, 226, 352, 486, 583
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 523, 543
SetI ASST 8 cut(s) 16, 37, 77, 100, 111, 121, 305, 391
SfaNI GCATC 2 cut(s) 491, 555
Sfr274I CTCGAG 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 3 cut(s) 230, 357, 574
SmoI CTYRAG 3 cut(s) 230, 357, 574
Sse9I AATT 1 cut(s) 266
SspI AATATT 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 521, 541
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 111
TaqI TCGA 3 cut(s) 48, 358, 485
TasI AATT 1 cut(s) 266
Tru1I TTAA 2 cut(s) 27, 222
Tru9I TTAA 2 cut(s) 27, 222
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 462
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 1 cut(s) 606
VspI ATTAAT 1 cut(s) 222
XapI RAATTY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.