Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

52641714 .. 52643462

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCAGAACCCTGAACACTCAGGGCGACTCAGTAAGTGGGCAATTGAGCTCAGCGAATTTGACATCGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGTAGCAGACTTCATCGCTGAACTTACTGAGCGTCAGCCAGAACCCGATACTCAAGCACAGCCCGGAACAGAAATGGTAACCAGTACAGGGGTACTTACCCCACAGTCGGATTGGGACCTACATGTGGACGGCTCCGCCTGCGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACCGGACCCGGGGGACTGAACGCAGAATATGCGTTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGCCTACTCCTCGCCATTGACTCAGGTGCTGACAGCGTCAACATATTCAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGCTAGCGGCGTATCTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAGTTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCCCTGGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCGGCGGACACAAGGGTGGAGTATCTTGACAAACCAAGTATCACAAAGACTCTGGCGGAAATCTTCAACATTCAGGTCAACCCCAGCTGGATGGACGAGATCATCATGTATAAGCGCAACGGAACCAAGTGGATAGAGGCAGAGCCACTGACGGCAATAACTACCGCCAAGGTAATTCACTTCCTTTGGAAGAATATCTATTGCCGCTACGGTGTCCCACACACAATCATCACAGATAACGGCACACAGTTCAACAATGACGAGCTCATCTCCTTCACCATCAACTTGGGCACCAAGCTGAGGTTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCGGCGAACAAGATAATAAAAAAGTTGTTAAAAAAGAAGCTCGACGACGCCAAGGGTTTATGGGCGGAAAAGCTCCCAGAGGTCCTGTGGGCCATCCGAACAACTCCAACTTCCGCCACAGGAGAAACCCCTTTTTGCATGATGTTCGGCACAGAGGCTGTCTTACCCATTGAAGTCACTCAACCTACCGCTAGAGTCGAAGGCTACGGGCCAGAGACCAACAGCGCCGGCGTCAACTTGGACAGGGACCTCCTCGAAGAGAAAAGGCTCGAGGCCCATTTGCACAATCTACAAAACAAGCAGCGGGTATCACGTTTTACAACGCCAGAGTCAAGGCCCGGAACCTCCAACTGGGGGACTTGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

439

Amino Acids

48.67

Weight (kDa)

6.05

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	74 - 153	1.3e-06	RNase H
RVT_3	PF13456	82 - 194	1e-19	Reverse transcriptase-like
rve	PF00665	244 - 310	4.6e-06	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 896
AclI	AACGTT	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	2 cut(s)	56, 311
AcyI	GRCGYC	3 cut(s)	258, 999, 1182
AfaI	GTAC	5 cut(s)	71, 187, 195, 347, 491
AfiI	CCNNNNNNNGG	8 cut(s)	189, 208, 226, 282, 460, 906, 1302, 1305
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	8 cut(s)	310, 316, 322, 330, 517, 673, 859, 1124
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	5 cut(s)	96, 435, 542, 570, 942
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	9 cut(s)	49, 326, 450, 472, 693, 871, 904, 991, 1024
AluI	AGCT	9 cut(s)	49, 326, 450, 472, 693, 871, 904, 991, 1024
Alw21I	GWGCWC	2 cut(s)	51, 873
Alw26I	GTCTC	2 cut(s)	571, 1160
AlwNI	CAGNNNCTG	2 cut(s)	392, 1109
Ama87I	CYCGRG	2 cut(s)	281, 1220
AoxI	GGCC	8 cut(s)	94, 249, 364, 940, 1041, 1160, 1224, 1286
ApeKI	GCWGC	2 cut(s)	469, 1252
ApoI	RAATTY	2 cut(s)	56, 311
AspLEI	GCGC	5 cut(s)	245, 260, 355, 723, 1178
AsuC2I	CCSGG	4 cut(s)	165, 282, 283, 1290
AsuHPI	GGTGA	1 cut(s)	874
AsuNHI	GCTAGC	1 cut(s)	472
AvaI	CYCGRG	2 cut(s)	281, 1220
AvaII	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
BaeGI	GKGCMC	1 cut(s)	899
BanI	GGYRCC	2 cut(s)	257, 896
BanII	GRGCYC	2 cut(s)	51, 873
Bbv12I	GWGCWC	2 cut(s)	51, 873
BbvCI	CCTCAGC	1 cut(s)	905
BbvI	GCAGC	2 cut(s)	481, 1264
BccI	CCATC	3 cut(s)	691, 893, 1052
BceAI	ACGGC	4 cut(s)	247, 774, 862, 955
BcgI	CGANNNNNNTGC	2 cut(s)	1078, 1112
BciT130I	CCWGG	5 cut(s)	98, 437, 544, 572, 944
BcnI	CCSGG	4 cut(s)	165, 282, 283, 1290
BcoDI	GTCTC	2 cut(s)	571, 1160
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	3 cut(s)	425, 473, 1143
BfoI	RGCGCY	3 cut(s)	261, 356, 1179
BisI	GCNGC	6 cut(s)	256, 470, 477, 811, 954, 1253
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	6 cut(s)	257, 471, 478, 812, 955, 1254
Bme1390I	CCNGG	9 cut(s)	98, 165, 282, 283, 437, 544, 572, 944, 1290
Bme18I	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
BmeT110I	CYCGRG	2 cut(s)	281, 1220
BmiI	GGNNCC	8 cut(s)	218, 235, 259, 280, 730, 898, 1199, 1294
BmrFI	CCNGG	9 cut(s)	98, 165, 282, 283, 437, 544, 572, 944, 1290
BmrI	ACTGGG	1 cut(s)	1312
BmsI	GCATC	1 cut(s)	923
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	1312
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
Bpu10I	CCTNAGC	2 cut(s)	558, 905
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	4 cut(s)	165, 282, 283, 1290
BsaHI	GRCGYC	3 cut(s)	258, 999, 1182
BsaI	GGTCTC	1 cut(s)	1160
BsaJI	CCNNGG	9 cut(s)	246, 281, 282, 459, 542, 543, 570, 774, 1002
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	8 cut(s)	189, 208, 226, 282, 460, 906, 1302, 1305
Bse118I	RCCGGY	2 cut(s)	362, 1178
Bse1I	ACTGG	3 cut(s)	183, 585, 1307
BseBI	CCWGG	5 cut(s)	98, 437, 544, 572, 944
BseDI	CCNNGG	9 cut(s)	246, 281, 282, 459, 542, 543, 570, 774, 1002
BseGI	GGATG	2 cut(s)	702, 1044
BseLI	CCNNNNNNNGG	8 cut(s)	189, 208, 226, 282, 460, 906, 1302, 1305
BseMII	CTCAG	6 cut(s)	33, 43, 64, 120, 399, 896
BseNI	ACTGG	3 cut(s)	183, 585, 1307
BseRI	GAGGAG	2 cut(s)	362, 1193
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	2 cut(s)	481, 1264
BseYI	CCCAGC	1 cut(s)	689
BshFI	GGCC	8 cut(s)	96, 251, 366, 942, 1043, 1162, 1226, 1288
BshNI	GGYRCC	2 cut(s)	257, 896
BsiHKAI	GWGCWC	2 cut(s)	51, 873
BsiHKCI	CYCGRG	2 cut(s)	281, 1220
BsiSI	CCGG	8 cut(s)	165, 261, 276, 282, 363, 608, 1179, 1290
BslFI	GGGAC	4 cut(s)	230, 300, 806, 1211
BslI	CCNNNNNNNGG	8 cut(s)	189, 208, 226, 282, 460, 906, 1302, 1305
BsmAI	GTCTC	2 cut(s)	571, 1160
BsmFI	GGGAC	4 cut(s)	230, 300, 806, 1211
BsnI	GGCC	8 cut(s)	96, 251, 366, 942, 1043, 1162, 1226, 1288
Bso31I	GGTCTC	1 cut(s)	1160
BsoBI	CYCGRG	2 cut(s)	281, 1220
Bsp1286I	GDGCHC	3 cut(s)	51, 873, 899
Bsp143I	GATC	1 cut(s)	705
Bsp1720I	GCTNAGC	1 cut(s)	50
BspANI	GGCC	8 cut(s)	96, 251, 366, 942, 1043, 1162, 1226, 1288
BspCNI	CTCAG	6 cut(s)	32, 42, 63, 121, 398, 897
BspHI	TCATGA	1 cut(s)	1316
BspLI	GGNNCC	8 cut(s)	218, 235, 259, 280, 730, 898, 1199, 1294
BspOI	GCTAGC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	257, 896
BspTNI	GGTCTC	1 cut(s)	1160
BsrFI	RCCGGY	2 cut(s)	362, 1178
BsrI	ACTGG	3 cut(s)	183, 585, 1307
BssAI	RCCGGY	2 cut(s)	362, 1178
BssECI	CCNNGG	9 cut(s)	246, 281, 282, 459, 542, 543, 570, 774, 1002
BssMI	GATC	1 cut(s)	705
BssNI	GRCGYC	3 cut(s)	258, 999, 1182
BssT1I	CCWWGG	4 cut(s)	246, 459, 774, 1002
Bst2UI	CCWGG	5 cut(s)	98, 437, 544, 572, 944
Bst4CI	ACNGT	3 cut(s)	207, 818, 855
Bst6I	CTCTTC	1 cut(s)	1203
BstACI	GRCGYC	3 cut(s)	258, 999, 1182
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	5 cut(s)	241, 253, 364, 474, 1180
BstDEI	CTNAG	7 cut(s)	19, 29, 50, 129, 385, 558, 905
BstEII	GGTNACC	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	702, 1044
BstH2I	RGCGCY	3 cut(s)	261, 356, 1179
BstHHI	GCGC	5 cut(s)	245, 260, 355, 723, 1178
BstKTI	GATC	1 cut(s)	708
BstMAI	GTCTC	2 cut(s)	571, 1160
BstMBI	GATC	1 cut(s)	705
BstMWI	GCNNNNNNNGC	6 cut(s)	240, 257, 302, 359, 581, 920
BstNI	CCWGG	5 cut(s)	98, 437, 544, 572, 944
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	178
BstSCI	CCNGG	9 cut(s)	96, 163, 280, 281, 435, 542, 570, 942, 1288
BstSLI	GKGCMC	1 cut(s)	899
BstV1I	GCAGC	2 cut(s)	481, 1264
BstXI	CCANNNNNNTGG	2 cut(s)	697, 892
BsuRI	GGCC	8 cut(s)	96, 251, 366, 942, 1043, 1162, 1226, 1288
BtgZI	GCGATG	2 cut(s)	100, 343
BtsCI	GGATG	2 cut(s)	702, 1044
BtsIMutI	CAGTG	1 cut(s)	752
Cac8I	GCNNGC	5 cut(s)	241, 253, 364, 474, 1180
CaiI	CAGNNNCTG	2 cut(s)	392, 1109
CciI	TCATGA	1 cut(s)	1316
CfoI	GCGC	5 cut(s)	245, 260, 355, 723, 1178
Cfr10I	RCCGGY	2 cut(s)	362, 1178
Cfr9I	CCCGGG	1 cut(s)	281
CseI	GACGC	4 cut(s)	122, 388, 1007, 1171
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	5 cut(s)	70, 186, 194, 346, 490
CviAII	CATG	5 cut(s)	88, 224, 712, 1090, 1317
CviQI	GTAC	5 cut(s)	70, 186, 194, 346, 490
DdeI	CTNAG	7 cut(s)	19, 29, 50, 129, 385, 558, 905
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	1 cut(s)	707
DpnII	GATC	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	1203
EarI	CTCTTC	1 cut(s)	1203
EciI	GGCGGA	6 cut(s)	226, 356, 626, 677, 1031, 1054
Ecl136II	GAGCTC	2 cut(s)	49, 871
Eco130I	CCWWGG	4 cut(s)	246, 459, 774, 1002
Eco24I	GRGCYC	2 cut(s)	51, 873
Eco31I	GGTCTC	1 cut(s)	1160
Eco47I	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
Eco53kI	GAGCTC	2 cut(s)	49, 871
Eco88I	CYCGRG	2 cut(s)	281, 1220
Eco91I	GGTNACC	1 cut(s)	178
EcoICRI	GAGCTC	2 cut(s)	49, 871
EcoO109I	RGGNCCY	3 cut(s)	217, 1033, 1198
EcoO65I	GGTNACC	1 cut(s)	178
EcoRII	CCWGG	5 cut(s)	96, 435, 542, 570, 942
EcoT14I	CCWWGG	4 cut(s)	246, 459, 774, 1002
EcoT38I	GRGCYC	2 cut(s)	51, 873
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	4 cut(s)	246, 459, 774, 1002
FaeI	CATG	5 cut(s)	91, 227, 715, 1093, 1320
FaqI	GGGAC	4 cut(s)	230, 300, 806, 1211
FatI	CATG	5 cut(s)	87, 223, 711, 1089, 1316
FauI	CCCGC	1 cut(s)	1248
Fnu4HI	GCNGC	6 cut(s)	256, 470, 477, 811, 954, 1253
FokI	GGATG	2 cut(s)	709, 1031
FriOI	GRGCYC	2 cut(s)	51, 873
Fsp4HI	GCNGC	6 cut(s)	256, 470, 477, 811, 954, 1253
FspBI	CTAG	3 cut(s)	425, 473, 1143
GlaI	GCGC	5 cut(s)	244, 259, 354, 722, 1177
GluI	GCNGC	6 cut(s)	256, 470, 477, 811, 954, 1253
GsaI	CCCAGC	1 cut(s)	693
HaeII	RGCGCY	3 cut(s)	261, 356, 1179
HaeIII	GGCC	8 cut(s)	96, 251, 366, 942, 1043, 1162, 1226, 1288
HapII	CCGG	8 cut(s)	165, 261, 276, 282, 363, 608, 1179, 1290
HgaI	GACGC	4 cut(s)	122, 388, 1007, 1171
HhaI	GCGC	5 cut(s)	245, 260, 355, 723, 1178
Hin1I	GRCGYC	3 cut(s)	258, 999, 1182
Hin1II	CATG	5 cut(s)	91, 227, 715, 1093, 1320
Hin6I	GCGC	5 cut(s)	243, 258, 353, 721, 1176
HinP1I	GCGC	5 cut(s)	243, 258, 353, 721, 1176
HincII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1186
HindII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1186
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	9 cut(s)	27, 264, 383, 416, 566, 604, 655, 1146, 1280
HpaII	CCGG	8 cut(s)	165, 261, 276, 282, 363, 608, 1179, 1290
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	6 cut(s)	229, 403, 433, 442, 685, 1186
Hpy188I	TCNGA	3 cut(s)	211, 603, 1049
Hpy188III	TCNNGA	2 cut(s)	632, 1317
Hpy8I	GTNNAC	6 cut(s)	229, 403, 433, 442, 685, 1186
Hpy99I	CGWCG	2 cut(s)	998, 1001
HpyAV	CCTTC	3 cut(s)	85, 889, 1145
HpyCH4III	ACNGT	3 cut(s)	207, 818, 855
HpyCH4IV	ACGT	3 cut(s)	492, 500, 1264
HpyCH4V	TGCA	4 cut(s)	4, 914, 1089, 1234
HpyF10VI	GCNNNNNNNGC	6 cut(s)	240, 257, 302, 359, 581, 920
HpyF3I	CTNAG	7 cut(s)	19, 29, 50, 129, 385, 558, 905
HpySE526I	ACGT	3 cut(s)	492, 500, 1264
Hsp92I	GRCGYC	3 cut(s)	258, 999, 1182
Hsp92II	CATG	5 cut(s)	91, 227, 715, 1093, 1320
HspAI	GCGC	5 cut(s)	243, 258, 353, 721, 1176
KasI	GGCGCC	1 cut(s)	257
KroI	GCCGGC	2 cut(s)	362, 1178
KroNI	GCCGGC	2 cut(s)	364, 1180
Kzo9I	GATC	1 cut(s)	705
LmnI	GCTCC	2 cut(s)	239, 1029
Lsp1109I	GCAGC	2 cut(s)	481, 1264
LweI	GCATC	1 cut(s)	923
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	3 cut(s)	425, 473, 1143
MaeII	ACGT	3 cut(s)	492, 500, 1264
MaeIII	GTNAC	2 cut(s)	178, 1126
MalI	GATC	1 cut(s)	707
MboI	GATC	1 cut(s)	705
MboII	GAAGA	3 cut(s)	661, 808, 1220
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	3 cut(s)	51, 873, 899
MluCI	AATT	4 cut(s)	42, 56, 311, 780
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	8 cut(s)	21, 273, 377, 410, 613, 649, 1155, 1289
MmeI	TCCRAC	2 cut(s)	189, 1082
MreI	CGCCGGCG	1 cut(s)	1178
MroNI	GCCGGC	2 cut(s)	362, 1178
MseI	TTAA	2 cut(s)	272, 980
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	3 cut(s)	255, 693, 1255
MspI	CCGG	8 cut(s)	165, 261, 276, 282, 363, 608, 1179, 1290
MspR9I	CCNGG	9 cut(s)	98, 165, 282, 283, 437, 544, 572, 944, 1290
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	5 cut(s)	98, 437, 544, 572, 944
MwoI	GCNNNNNNNGC	6 cut(s)	240, 257, 302, 359, 581, 920
NaeI	GCCGGC	2 cut(s)	364, 1180
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	4 cut(s)	165, 282, 283, 1290
NdeII	GATC	1 cut(s)	705
NgoMIV	GCCGGC	2 cut(s)	362, 1178
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	5 cut(s)	91, 227, 715, 1093, 1320
NlaIV	GGNNCC	8 cut(s)	218, 235, 259, 280, 730, 898, 1199, 1294
NmuCI	GTSAC	1 cut(s)	1126
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	1220
PagI	TCATGA	1 cut(s)	1316
PasI	CCCWGGG	1 cut(s)	543
PciI	ACATGT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	945
PdiI	GCCGGC	2 cut(s)	364, 1180
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	2 cut(s)	398, 1312
PkrI	GCNGC	6 cut(s)	257, 471, 478, 812, 955, 1254
PleI	GAGTC	8 cut(s)	21, 272, 377, 410, 612, 649, 1154, 1288
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	8 cut(s)	21, 272, 377, 410, 612, 649, 1154, 1288
PpuMI	RGGWCCY	3 cut(s)	217, 1033, 1198
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	2 cut(s)	51, 873
Psp1406I	AACGTT	1 cut(s)	500
Psp5II	RGGWCCY	3 cut(s)	217, 1033, 1198
Psp6I	CCWGG	5 cut(s)	96, 435, 542, 570, 942
PspEI	GGTNACC	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	5 cut(s)	96, 435, 542, 570, 942
PspN4I	GGNNCC	8 cut(s)	218, 235, 259, 280, 730, 898, 1199, 1294
PspPPI	RGGWCCY	3 cut(s)	217, 1033, 1198
PspXI	VCTCGAGB	1 cut(s)	1220
PstNI	CAGNNNCTG	2 cut(s)	392, 1109
PsyI	GACNNNGTC	2 cut(s)	398, 1312
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	5 cut(s)	71, 187, 195, 347, 491
RsaNI	GTAC	5 cut(s)	70, 186, 194, 346, 490
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	2 cut(s)	51, 873
SaqAI	TTAA	2 cut(s)	272, 980
SatI	GCNGC	6 cut(s)	256, 470, 477, 811, 954, 1253
Sau3AI	GATC	1 cut(s)	705
SchI	GAGTC	8 cut(s)	21, 273, 377, 410, 613, 649, 1155, 1289
ScrFI	CCNGG	9 cut(s)	98, 165, 282, 283, 437, 544, 572, 944, 1290
SduI	GDGCHC	3 cut(s)	51, 873, 899
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	923
SfoI	GGCGCC	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	1220
SgrAI	CRCCGGYG	1 cut(s)	1178
SinI	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
SlaI	CTCGAG	1 cut(s)	1220
SmaI	CCCGGG	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	153, 1220
SmoI	CTYRAG	2 cut(s)	153, 1220
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	4 cut(s)	42, 56, 311, 780
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	3 cut(s)	425, 473, 1143
SstI	GAGCTC	2 cut(s)	51, 873
StyD4I	CCNGG	9 cut(s)	96, 163, 280, 281, 435, 542, 570, 942, 1288
StyI	CCWWGG	4 cut(s)	246, 459, 774, 1002
TaaI	ACNGT	3 cut(s)	207, 818, 855
TaiI	ACGT	3 cut(s)	495, 503, 1267
TaqI	TCGA	6 cut(s)	66, 948, 993, 1149, 1206, 1221
TasI	AATT	4 cut(s)	42, 56, 311, 780
TatI	WGTACW	2 cut(s)	69, 185
TauI	GCSGC	4 cut(s)	258, 479, 813, 956
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	272, 980
Tru9I	TTAA	2 cut(s)	272, 980
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	1126
TseI	GCWGC	2 cut(s)	469, 1252
Tsp45I	GTSAC	1 cut(s)	1126
TspDTI	ATGAA	2 cut(s)	103, 104
TspGWI	ACGGA	1 cut(s)	741
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	1 cut(s)	759
Tth111I	GACNNNGTC	2 cut(s)	398, 1312
VpaK11BI	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
XapI	RAATTY	2 cut(s)	56, 311
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 1035
XhoI	CTCGAG	1 cut(s)	1220
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	3 cut(s)	425, 473, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.