Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7968088.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 410

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7968088.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

atgtcctcctaccaggccttggcccgggccttagttcagagattcacctcctacatttttacccaaatacctagggcagaaaatgacaaggcagacgcccttgctaagctcgcatcaacttctccaaaccttacctatggggccactaaagttgaaatactcgcgggacctagcacctccaaaacggtgtcaaaaatattttcggtggatcacaaagcttcatggatggacccaattttgaaatacatgatcgatggcctagcaccagatgataaggtcgaggccagaagactacagctaaggtcagctcgatacacgatcatgaacgacaaactgtacagaagagggcattgctttcccaacctgaagtgtgtgacaccggaggagggtcacaaaataatgaaggaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

136

Amino Acids

15.33

Weight (kDa)

9.52

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccII	CGCG	1 cut(s)	164
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	19, 24, 386
AgsI	TTSAA	2 cut(s)	155, 241
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	4 cut(s)	109, 218, 298, 308
AluI	AGCT	4 cut(s)	109, 218, 298, 308
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	6 cut(s)	15, 21, 27, 141, 256, 282
AspA2I	CCTAGG	1 cut(s)	71
AspS9I	GGNCC	5 cut(s)	22, 27, 141, 167, 229
AsuC2I	CCSGG	2 cut(s)	25, 26
AsuHPI	GGTGA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	167, 229
AvrII	CCTAGG	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	295
BccI	CCATC	2 cut(s)	220, 248
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	2 cut(s)	25, 26
BfaI	CTAG	3 cut(s)	72, 171, 260
BfmI	CTRYAG	1 cut(s)	293
BlnI	CCTAGG	1 cut(s)	71
BlpI	GCTNAGC	1 cut(s)	105
Bme1390I	CCNGG	3 cut(s)	14, 25, 26
Bme18I	GGWCC	2 cut(s)	167, 229
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	5 cut(s)	22, 27, 141, 167, 229
BmiI	GGNNCC	3 cut(s)	142, 168, 231
BmrFI	CCNGG	3 cut(s)	14, 25, 26
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuMI	CCSGG	2 cut(s)	25, 26
Bsa29I	ATCGAT	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	18, 24, 71
BsaWI	WCCGGW	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 24, 386
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	14
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	18, 24, 71
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	3 cut(s)	19, 24, 386
BseMI	GCAATG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	6 cut(s)	17, 23, 29, 143, 258, 284
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	25, 380
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	19, 24, 386
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	6 cut(s)	17, 23, 29, 143, 258, 284
BsoBI	CYCGRG	1 cut(s)	24
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	208, 249, 318
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	6 cut(s)	17, 23, 29, 143, 258, 284
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	164
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	142, 168, 231
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	18, 24, 71
BssMI	GATC	3 cut(s)	208, 249, 318
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	18, 71
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	187, 336
Bst6I	CTCTTC	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	31, 105, 299
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	3 cut(s)	211, 252, 321
BstMBI	GATC	3 cut(s)	208, 249, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	3 cut(s)	12, 23, 24
BstSFI	CTRYAG	1 cut(s)	293
BstUI	CGCG	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	6 cut(s)	17, 23, 29, 143, 258, 284
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	111
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	5 cut(s)	22, 27, 141, 167, 229
Cfr9I	CCCGGG	1 cut(s)	24
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	337
CspCI	CAANNNNNGTGG	2 cut(s)	133, 168
CviAII	CATG	3 cut(s)	222, 247, 322
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	31, 105, 299
DpnI	GATC	3 cut(s)	210, 251, 320
DpnII	GATC	3 cut(s)	208, 249, 318
Eam1104I	CTCTTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	18, 71
Eco147I	AGGCCT	1 cut(s)	17
Eco47I	GGWCC	2 cut(s)	167, 229
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	18, 71
ErhI	CCWWGG	2 cut(s)	18, 71
FaeI	CATG	3 cut(s)	225, 250, 325
FaiI	YATR	4 cut(s)	138, 223, 248, 323
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	3 cut(s)	221, 246, 321
FauI	CCCGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	238
FspBI	CTAG	3 cut(s)	72, 171, 260
HaeIII	GGCC	6 cut(s)	17, 23, 29, 143, 258, 284
HapII	CCGG	2 cut(s)	25, 380
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	225, 250, 325
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	2 cut(s)	25, 380
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	2 cut(s)	187, 336
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	31, 105, 299
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	225, 250, 325
Kzo9I	GATC	3 cut(s)	208, 249, 318
LpnPI	CCDG	6 cut(s)	26, 38, 279, 298, 377, 393
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	3 cut(s)	72, 171, 260
MaeIII	GTNAC	2 cut(s)	373, 389
MalI	GATC	3 cut(s)	210, 251, 320
MboI	GATC	3 cut(s)	208, 249, 318
MboII	GAAGA	2 cut(s)	300, 354
MluCI	AATT	1 cut(s)	234
MnlI	CCTC	7 cut(s)	16, 58, 187, 274, 338, 376, 379
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	2 cut(s)	25, 380
MspR9I	CCNGG	3 cut(s)	14, 25, 26
MvaI	CCWGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	110
NciI	CCSGG	2 cut(s)	25, 26
NdeII	GATC	3 cut(s)	208, 249, 318
NlaIII	CATG	3 cut(s)	225, 250, 325
NlaIV	GGNNCC	3 cut(s)	142, 168, 231
NmuCI	GTSAC	2 cut(s)	373, 389
PagI	TCATGA	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	142, 168, 231
PspPI	GGNCC	5 cut(s)	22, 27, 141, 167, 229
PspPPI	RGGWCCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	320
Sau3AI	GATC	3 cut(s)	208, 249, 318
Sau96I	GGNCC	5 cut(s)	22, 27, 141, 167, 229
ScrFI	CCNGG	3 cut(s)	14, 25, 26
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	167, 229
SmaI	CCCGGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	320
SrfI	GCCCGGGC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	234
SseBI	AGGCCT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	3 cut(s)	72, 171, 260
StuI	AGGCCT	1 cut(s)	17
StyD4I	CCNGG	3 cut(s)	12, 23, 24
StyI	CCWWGG	2 cut(s)	18, 71
TaaI	ACNGT	2 cut(s)	187, 336
TaqI	TCGA	3 cut(s)	252, 279, 310
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	373, 389
Tsp45I	GTSAC	2 cut(s)	373, 389
TspDTI	ATGAA	2 cut(s)	210, 338
TspMI	CCCGGG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	167, 229
XmaI	CCCGGG	1 cut(s)	24
XmaJI	CCTAGG	1 cut(s)	71
XspI	CTAG	3 cut(s)	72, 171, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.