Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

45007162 .. 45008472

Gene Structure 1311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G021110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGCCATCGAGCTGGGGGAGTTCGATATCAAGTACCAGCCCCGGACAGCCATCAAGGGCCAGGCAGCGGTAGATTTATTTCAGAATCAATCCCCTCCCATAACCCAAACCAGGAATCACCTGAACCACTAGCCGCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTTGATGGAGCATCCAACAAGAAAACCAGCGGAGCCGGCATCCTGCTAATTAGCCCGGACAATCAAGTCTACGAGTACGCCCTCAAATTTGCCTTCAAAGCATCCAACAATGCCGCAGAGTATGAGGCACTCATAGCAGGTCTGCAGATCGCCCGGGAACTAGGGGTGCAGCACCTTAGTATCTTCAGTGATTCTCAGTTAGTCGTAAACCAGGCCAGCGGTAACTTCGAGGCAAAGGAGCCCCACATGTCGTCTTACCAGGCCTTAGCCCGGGCATTAGTTCAGAGATTTACCTCCTACGTTTTTACCCAAATACCGAGGACAGAAAAAGACAAGGCAGACGCCCTTGCTAAGCTTGCATCAACTTCTCCAAGTCCTACCTATGAGGCCGCTAAGGTCGAGATACTCGAGAAACCTAGAACTTCTAAAGCGGTGTCAGAAATATTTATGGTGGATCACACAGCTTCATGGATGGACCCAATCTTGAAGTACATGGTCGACGGCCTAGCACCGGACGATAAGGTAGAAGCCAGAAGACTACAGTTAAGGTCAGCTCGATACACGATCATGAATGGCAAATTGTACAGAAGAGGTCACTGCTTTCCCAACCTAAAGTGTGTAACAACGGAGGAAGGTCACAAAATAATGAAGGACATTCACGCCGGTGTATGCGGTAACCATGCCGGAGCCCAATCTCTTGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCCTGGCCCAAACAATATCCAGTTCTTGCCACAAATGCCAAATGTATGCAAATATCCCAAGGGCACCGCCCATTGCCCTCTCCATCCTCCTTGCACCATGGCTGTTTTGTCAGTGGGGTTTGGACTTGATTGGTAAACTTCCCCCAGCAGTGGGACAGTTTGGAGTCCCGGACACCATAGCCACGGACAATGGTACCCAGTTTGACAATGATGAGTTGAGGGCTTGCACAGAGAACCTGGGCACCAAGATCCTCTATGCTTCCCCTGCTCACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

397

Amino Acids

43.38

Weight (kDa)

8.09

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	55 - 131	3.4e-08	RNase H
RVT_3	PF13456	58 - 177	2.3e-20	Reverse transcriptase-like
Integrase_H2C2	PF17921	267 - 321	7.4e-08	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
Acc36I	ACCTGC	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	1109
AccB1I	GGYRCC	3 cut(s)	979, 1109, 1157
AccI	GTMKAC	2 cut(s)	240, 669
AclWI	GGATC	3 cut(s)	134, 633, 1159
AcoI	YGGCCR	1 cut(s)	902
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	5 cut(s)	36, 248, 662, 755, 1111
AfiI	CCNNNNNNNGG	6 cut(s)	68, 112, 441, 682, 1066, 1067
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	268, 658
AjnI	CCWGG	6 cut(s)	61, 111, 381, 429, 918, 1152
AleI	CACNNNNGTG	1 cut(s)	834
AluBI	AGCT	4 cut(s)	14, 526, 635, 725
AluI	AGCT	4 cut(s)	14, 526, 635, 725
AlwI	GGATC	3 cut(s)	134, 633, 1159
Ama87I	CYCGRG	3 cut(s)	324, 441, 578
AoxI	GGCC	9 cut(s)	4, 59, 384, 432, 558, 673, 902, 915, 921
ApeKI	GCWGC	2 cut(s)	66, 340
ApoI	RAATTY	1 cut(s)	257
Asp718I	GGTACC	1 cut(s)	1109
AspS9I	GGNCC	5 cut(s)	4, 59, 646, 916, 922
AsuC2I	CCSGG	7 cut(s)	44, 227, 325, 326, 442, 443, 1085
AsuHPI	GGTGA	2 cut(s)	111, 1178
AvaI	CYCGRG	3 cut(s)	324, 441, 578
AvaII	GGWCC	1 cut(s)	646
AxyI	CCTNAGG	1 cut(s)	884
BaeGI	GKGCMC	2 cut(s)	982, 1160
BaeI	ACNNNNGTAYC	4 cut(s)	334, 367, 1093, 1126
BalI	TGGCCA	1 cut(s)	904
BanI	GGYRCC	3 cut(s)	979, 1109, 1157
BanII	GRGCYC	2 cut(s)	414, 862
BbsI	GAAGAC	1 cut(s)	712
BbvI	GCAGC	2 cut(s)	78, 352
BccI	CCATC	5 cut(s)	15, 60, 170, 637, 1007
BceAI	ACGGC	1 cut(s)	688
BciT130I	CCWGG	6 cut(s)	63, 113, 383, 431, 920, 1154
BcnI	CCSGG	7 cut(s)	44, 227, 325, 326, 442, 443, 1085
BfaI	CTAG	5 cut(s)	131, 332, 588, 677, 1192
BfmI	CTRYAG	2 cut(s)	314, 710
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	5 cut(s)	67, 135, 285, 341, 561
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	5 cut(s)	68, 136, 286, 342, 562
Bme18I	GGWCC	1 cut(s)	646
BmeT110I	CYCGRG	3 cut(s)	324, 441, 578
BmgT120I	GGNCC	5 cut(s)	4, 59, 646, 916, 922
BmiI	GGNNCC	7 cut(s)	205, 411, 648, 859, 981, 1111, 1159
BmrI	ACTGGG	1 cut(s)	1108
BmsI	GCATC	4 cut(s)	191, 219, 281, 539
BmuI	ACTGGG	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	712
Bpu10I	CCTNAGC	2 cut(s)	436, 564
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuMI	CCSGG	7 cut(s)	44, 227, 325, 326, 442, 443, 1085
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	9 cut(s)	42, 324, 441, 488, 918, 974, 1013, 1098, 1153
BsaWI	WCCGGW	1 cut(s)	682
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 112, 441, 682, 1066, 1067
Bse118I	RCCGGY	2 cut(s)	206, 833
Bse1I	ACTGG	2 cut(s)	936, 1114
Bse21I	CCTNAGG	1 cut(s)	884
Bse3DI	GCAATG	1 cut(s)	987
BseBI	CCWGG	6 cut(s)	63, 113, 383, 431, 920, 1154
BseDI	CCNNGG	9 cut(s)	42, 324, 441, 488, 918, 974, 1013, 1098, 1153
BseGI	GGATG	5 cut(s)	182, 210, 272, 648, 999
BseLI	CCNNNNNNNGG	6 cut(s)	68, 112, 441, 682, 1066, 1067
BseMI	GCAATG	1 cut(s)	987
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	936, 1114
BseSI	GKGCMC	2 cut(s)	982, 1160
BseXI	GCAGC	2 cut(s)	78, 352
BseYI	CCCAGC	2 cut(s)	14, 1060
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	9 cut(s)	6, 61, 386, 434, 560, 675, 904, 917, 923
BshNI	GGYRCC	3 cut(s)	979, 1109, 1157
BsiHKCI	CYCGRG	3 cut(s)	324, 441, 578
BsiSI	CCGG	9 cut(s)	44, 207, 227, 325, 442, 683, 834, 855, 1085
BslFI	GGGAC	2 cut(s)	1067, 1083
BslI	CCNNNNNNNGG	6 cut(s)	68, 112, 441, 682, 1066, 1067
BsmFI	GGGAC	2 cut(s)	1067, 1083
BsnI	GGCC	9 cut(s)	6, 61, 386, 434, 560, 675, 904, 917, 923
BsoBI	CYCGRG	3 cut(s)	324, 441, 578
Bsp1286I	GDGCHC	4 cut(s)	414, 862, 982, 1160
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	5 cut(s)	139, 318, 625, 735, 1164
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp19I	CCATGG	1 cut(s)	1013
BspANI	GGCC	9 cut(s)	6, 61, 386, 434, 560, 675, 904, 917, 923
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	7 cut(s)	205, 411, 648, 859, 981, 1111, 1159
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	3 cut(s)	134, 633, 1159
BspT107I	GGYRCC	3 cut(s)	979, 1109, 1157
BsrDI	GCAATG	1 cut(s)	987
BsrFI	RCCGGY	2 cut(s)	206, 833
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	936, 1114
BssAI	RCCGGY	2 cut(s)	206, 833
BssECI	CCNNGG	9 cut(s)	42, 324, 441, 488, 918, 974, 1013, 1098, 1153
BssMI	GATC	5 cut(s)	139, 318, 625, 735, 1164
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	974, 1013
Bst2UI	CCWGG	6 cut(s)	63, 113, 383, 431, 920, 1154
Bst4CI	ACNGT	2 cut(s)	714, 1074
Bst6I	CTCTTC	1 cut(s)	754
BstACI	GRCGYC	1 cut(s)	513
BstAUI	TGTACA	1 cut(s)	753
BstC8I	GCNNGC	4 cut(s)	208, 388, 528, 1141
BstDEI	CTNAG	6 cut(s)	347, 366, 436, 522, 564, 884
BstDSI	CCRYGG	2 cut(s)	1013, 1098
BstEII	GGTNACC	1 cut(s)	845
BstF5I	GGATG	5 cut(s)	182, 210, 272, 648, 999
BstKTI	GATC	5 cut(s)	142, 321, 628, 738, 1167
BstMBI	GATC	5 cut(s)	139, 318, 625, 735, 1164
BstMWI	GCNNNNNNNGC	6 cut(s)	207, 269, 305, 527, 951, 1181
BstNI	CCWGG	6 cut(s)	63, 113, 383, 431, 920, 1154
BstNSI	RCATGY	1 cut(s)	421
BstPI	GGTNACC	1 cut(s)	845
BstSFI	CTRYAG	2 cut(s)	314, 710
BstSLI	GKGCMC	2 cut(s)	982, 1160
BstV1I	GCAGC	2 cut(s)	78, 352
BstV2I	GAAGAC	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	139, 1164
BstXI	CCANNNNNNTGG	2 cut(s)	14, 159
BstYI	RGATCY	2 cut(s)	139, 1164
Bsu36I	CCTNAGG	1 cut(s)	884
BsuRI	GGCC	9 cut(s)	6, 61, 386, 434, 560, 675, 904, 917, 923
BtgI	CCRYGG	2 cut(s)	1013, 1098
BtsCI	GGATG	5 cut(s)	182, 210, 272, 648, 999
BtsI	GCAGTG	2 cut(s)	766, 1071
BtsIMutI	CAGTG	4 cut(s)	364, 766, 1034, 1071
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	4 cut(s)	208, 388, 528, 1141
CciI	TCATGA	1 cut(s)	738
Cfr10I	RCCGGY	2 cut(s)	206, 833
Cfr13I	GGNCC	5 cut(s)	4, 59, 646, 916, 922
Cfr9I	CCCGGG	2 cut(s)	324, 441
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	5 cut(s)	35, 247, 661, 754, 1110
CviAII	CATG	7 cut(s)	418, 639, 664, 739, 851, 910, 1014
CviQI	GTAC	5 cut(s)	35, 247, 661, 754, 1110
DdeI	CTNAG	6 cut(s)	347, 366, 436, 522, 564, 884
DpnI	GATC	5 cut(s)	141, 320, 627, 737, 1166
DpnII	GATC	5 cut(s)	139, 318, 625, 735, 1164
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	902
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	2 cut(s)	974, 1013
Eco147I	AGGCCT	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	414, 862
Eco32I	GATATC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	340
Eco81I	CCTNAGG	1 cut(s)	884
Eco88I	CYCGRG	3 cut(s)	324, 441, 578
Eco91I	GGTNACC	1 cut(s)	845
EcoO65I	GGTNACC	1 cut(s)	845
EcoRII	CCWGG	6 cut(s)	61, 111, 381, 429, 918, 1152
EcoRV	GATATC	1 cut(s)	29
EcoT14I	CCWWGG	2 cut(s)	974, 1013
EcoT38I	GRGCYC	2 cut(s)	414, 862
ErhI	CCWWGG	2 cut(s)	974, 1013
FaeI	CATG	7 cut(s)	421, 642, 667, 742, 854, 913, 1017
FaqI	GGGAC	2 cut(s)	1067, 1083
FatI	CATG	7 cut(s)	417, 638, 663, 738, 850, 909, 1013
FblI	GTMKAC	2 cut(s)	240, 669
Fnu4HI	GCNGC	5 cut(s)	67, 135, 285, 341, 561
FokI	GGATG	5 cut(s)	169, 197, 259, 655, 986
FriOI	GRGCYC	2 cut(s)	414, 862
Fsp4HI	GCNGC	5 cut(s)	67, 135, 285, 341, 561
FspBI	CTAG	5 cut(s)	131, 332, 588, 677, 1192
GluI	GCNGC	5 cut(s)	67, 135, 285, 341, 561
GsaI	CCCAGC	2 cut(s)	18, 1064
HaeIII	GGCC	9 cut(s)	6, 61, 386, 434, 560, 675, 904, 917, 923
HapII	CCGG	9 cut(s)	44, 207, 227, 325, 442, 683, 834, 855, 1085
HgaI	GACGC	1 cut(s)	521
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	7 cut(s)	421, 642, 667, 742, 854, 913, 1017
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	4 cut(s)	86, 116, 362, 1080
HpaII	CCGG	9 cut(s)	44, 207, 227, 325, 442, 683, 834, 855, 1085
HphI	GGTGA	2 cut(s)	111, 1178
Hpy166II	GTNNAC	4 cut(s)	241, 379, 670, 1052
Hpy188I	TCNGA	3 cut(s)	85, 456, 610
Hpy188III	TCNNGA	4 cut(s)	571, 580, 655, 739
Hpy8I	GTNNAC	4 cut(s)	241, 379, 670, 1052
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	3 cut(s)	274, 797, 814
HpyCH4III	ACNGT	2 cut(s)	714, 1074
HpyCH4IV	ACGT	2 cut(s)	171, 471
HpyCH4V	TGCA	7 cut(s)	316, 340, 530, 872, 965, 1010, 1143
HpyF10VI	GCNNNNNNNGC	6 cut(s)	207, 269, 305, 527, 951, 1181
HpyF3I	CTNAG	6 cut(s)	347, 366, 436, 522, 564, 884
HpySE526I	ACGT	2 cut(s)	171, 471
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	7 cut(s)	421, 642, 667, 742, 854, 913, 1017
KpnI	GGTACC	1 cut(s)	1113
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	139, 318, 625, 735, 1164
LmnI	GCTCC	4 cut(s)	179, 203, 409, 857
Lsp1109I	GCAGC	2 cut(s)	78, 352
LweI	GCATC	4 cut(s)	191, 219, 281, 539
MaeI	CTAG	5 cut(s)	131, 332, 588, 677, 1192
MaeII	ACGT	2 cut(s)	171, 471
MaeIII	GTNAC	5 cut(s)	392, 764, 790, 806, 845
MalI	GATC	5 cut(s)	141, 320, 627, 737, 1166
MboI	GATC	5 cut(s)	139, 318, 625, 735, 1164
MboII	GAAGA	3 cut(s)	346, 717, 771
MflI	RGATCY	2 cut(s)	139, 1164
MhlI	GDGCHC	4 cut(s)	414, 862, 982, 1160
MlsI	TGGCCA	1 cut(s)	904
MluCI	AATT	3 cut(s)	219, 257, 749
MluNI	TGGCCA	1 cut(s)	904
MlyI	GAGTC	1 cut(s)	1089
MmeI	TCCRAC	2 cut(s)	210, 300
Mox20I	TGGCCA	1 cut(s)	904
MroNI	GCCGGC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	904
MseI	TTAA	1 cut(s)	716
MslI	CAYNNNNRTG	2 cut(s)	737, 834
Msp20I	TGGCCA	1 cut(s)	904
MspA1I	CMGCKG	3 cut(s)	69, 201, 390
MspI	CCGG	9 cut(s)	44, 207, 227, 325, 442, 683, 834, 855, 1085
MvaI	CCWGG	6 cut(s)	63, 113, 383, 431, 920, 1154
MwoI	GCNNNNNNNGC	6 cut(s)	207, 269, 305, 527, 951, 1181
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	7 cut(s)	44, 227, 325, 326, 442, 443, 1085
NcoI	CCATGG	1 cut(s)	1013
NdeII	GATC	5 cut(s)	139, 318, 625, 735, 1164
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	7 cut(s)	421, 642, 667, 742, 854, 913, 1017
NlaIV	GGNNCC	7 cut(s)	205, 411, 648, 859, 981, 1111, 1159
NmuCI	GTSAC	2 cut(s)	764, 806
NspI	RCATGY	1 cut(s)	421
OliI	CACNNNNGTG	1 cut(s)	834
PaeR7I	CTCGAG	1 cut(s)	578
PagI	TCATGA	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	434
PciI	ACATGT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	86, 116, 362
PfoI	TCCNGGA	1 cut(s)	1083
PkrI	GCNGC	5 cut(s)	68, 136, 286, 342, 562
PleI	GAGTC	1 cut(s)	1088
PpsI	GAGTC	1 cut(s)	1088
PscI	ACATGT	1 cut(s)	417
Psp6I	CCWGG	6 cut(s)	61, 111, 381, 429, 918, 1152
PspEI	GGTNACC	1 cut(s)	845
PspFI	CCCAGC	2 cut(s)	14, 1060
PspGI	CCWGG	6 cut(s)	61, 111, 381, 429, 918, 1152
PspN4I	GGNNCC	7 cut(s)	205, 411, 648, 859, 981, 1111, 1159
PspPI	GGNCC	5 cut(s)	4, 59, 646, 916, 922
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	139, 1164
RsaI	GTAC	5 cut(s)	36, 248, 662, 755, 1111
RsaNI	GTAC	5 cut(s)	35, 247, 661, 754, 1110
RseI	CAYNNNNRTG	2 cut(s)	737, 834
SalI	GTCGAC	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	716
SatI	GCNGC	5 cut(s)	67, 135, 285, 341, 561
Sau3AI	GATC	5 cut(s)	139, 318, 625, 735, 1164
Sau96I	GGNCC	5 cut(s)	4, 59, 646, 916, 922
SchI	GAGTC	1 cut(s)	1089
SduI	GDGCHC	4 cut(s)	414, 862, 982, 1160
SfaNI	GCATC	4 cut(s)	191, 219, 281, 539
SfcI	CTRYAG	2 cut(s)	314, 710
Sfr274I	CTCGAG	1 cut(s)	578
SgrAI	CRCCGGYG	1 cut(s)	833
SinI	GGWCC	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	578
SmaI	CCCGGG	2 cut(s)	326, 443
SmiMI	CAYNNNNRTG	2 cut(s)	737, 834
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SrfI	GCCCGGGC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	219, 257, 749
SseBI	AGGCCT	1 cut(s)	434
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	5 cut(s)	131, 332, 588, 677, 1192
StuI	AGGCCT	1 cut(s)	434
StyI	CCWWGG	2 cut(s)	974, 1013
TaaI	ACNGT	2 cut(s)	714, 1074
TaiI	ACGT	2 cut(s)	174, 474
TaqI	TCGA	7 cut(s)	10, 25, 399, 570, 579, 669, 727
TasI	AATT	3 cut(s)	219, 257, 749
TatI	WGTACW	2 cut(s)	660, 753
TauI	GCSGC	3 cut(s)	137, 287, 563
TfiI	GAWTC	3 cut(s)	86, 116, 362
Tru1I	TTAA	1 cut(s)	716
Tru9I	TTAA	1 cut(s)	716
TscAI	CASTG	4 cut(s)	364, 773, 1034, 1071
TseFI	GTSAC	2 cut(s)	764, 806
TseI	GCWGC	2 cut(s)	66, 340
Tsp45I	GTSAC	2 cut(s)	764, 806
TspDTI	ATGAA	3 cut(s)	627, 755, 833
TspGWI	ACGGA	2 cut(s)	812, 1115
TspMI	CCCGGG	2 cut(s)	324, 441
TspRI	CASTG	4 cut(s)	364, 773, 1034, 1071
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XhoI	CTCGAG	1 cut(s)	578
XmaI	CCCGGG	2 cut(s)	324, 441
XmiI	GTMKAC	2 cut(s)	240, 669
XspI	CTAG	5 cut(s)	131, 332, 588, 677, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.