Rw5G022430

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
30923421 .. 30924743
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022430.1

Sequence Viewer

Length: 849 bp
ATGTCCTCCTACCAGGCCTTGGCCTGGGCTTTAGTTAAGAGGTTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAAACGCCCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACATATGGGGCCACTAAAGTCGAAATACTCGCGGGACCTAGCACTTCCAAAACGGTATCAGAAATATTTTCGGTGGATCACACAAGTTCATGGATGGACCCAATTTTGAAATACATGGTCGACGGCCTAGCCCCGGATGATAGGGTCGAGGCCAGAAGACTACAGCTAAGGTCAGCTCGATACACGATCATGAATGGCAAACTGTACAGAAGAGGGCATTGCTTTCCCAACCTGAAGTGTGTAACACCGGAGGAAGGTCACAAAATAATGAAGGACATTCACGCTGGTACCAACGGTCAGGTTGAAGCTGTCAACAAGATAATCAAGAAAATACTGAAAAAGAAACTTGACGAAGCCAAGGGTCTTTGGGCTGCTAAACTCCCGGAAGTGTTGTGGGCTATCAGAACCACGGCAACGGAGGCCACCGGGGAGACCCCTTTCTGCATGGCTTTTGGATCAGAAGCCGTACTCCCTATTGAAACACAAATCCAGAGTCCCCGGATCGAATACTTCGATGCGGGTACCAACTCAGATGGCCTACACCTCGATGCTGATTTACTCGAGGAACGAAGAGATGTGGCACATATGCATAACTTGGCGAACAAGCGGAGGATAGCTCGTTACTACGATGCCAAGGTACAGTCCCGGACATTAAAATTAGGGGACTGGGTCATGAAGCAAGTCTACCCAGAGCCCCGGGGACTGGATCCATCCTGA

Protein Analysis

282

Amino Acids

31.66

Weight (kDa)

9.18

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 419, 653
AccB1I GGYRCC 2 cut(s) 419, 653
AccB7I CCANNNNNTGG 1 cut(s) 19
AccI GTMKAC 2 cut(s) 252, 816
AccII CGCG 1 cut(s) 164
AciI CCGC 3 cut(s) 164, 650, 739
AclWI GGATC 5 cut(s) 216, 595, 641, 833, 846
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 5 cut(s) 338, 421, 600, 655, 771
AfiI CCNNNNNNNGG 6 cut(s) 19, 24, 137, 265, 386, 835
AgsI TTSAA 3 cut(s) 241, 437, 611
AjnI CCWGG 2 cut(s) 12, 23
AluBI AGCT 5 cut(s) 109, 298, 308, 440, 749
AluI AGCT 5 cut(s) 109, 298, 308, 440, 749
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 5 cut(s) 216, 595, 641, 833, 846
Ama87I CYCGRG 2 cut(s) 692, 828
AoxI GGCC 7 cut(s) 15, 21, 141, 256, 282, 552, 667
ApeKI GCWGC 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
Asp718I GGTACC 2 cut(s) 419, 653
AspS9I GGNCC 3 cut(s) 141, 167, 229
AsuC2I CCSGG 7 cut(s) 266, 515, 559, 631, 778, 829, 830
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 2 cut(s) 692, 828
AvaII GGWCC 2 cut(s) 167, 229
BaeI ACNNNNGTAYC 2 cut(s) 403, 436
BamHI GGATCC 1 cut(s) 838
BanI GGYRCC 2 cut(s) 419, 653
BanII GRGCYC 1 cut(s) 828
BarI GAAGNNNNNNTAC 2 cut(s) 800, 832
BbsI GAAGAC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 220, 659
BceAI ACGGC 3 cut(s) 271, 558, 581
BciT130I CCWGG 2 cut(s) 14, 25
BcnI CCSGG 7 cut(s) 266, 515, 559, 631, 778, 829, 830
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 2 cut(s) 171, 260
BfmI CTRYAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 504
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 9 cut(s) 14, 25, 266, 515, 559, 631, 778, 829, 830
Bme18I GGWCC 2 cut(s) 167, 229
BmeT110I CYCGRG 2 cut(s) 692, 828
BmgT120I GGNCC 3 cut(s) 141, 167, 229
BmiI GGNNCC 6 cut(s) 142, 168, 231, 421, 655, 840
BmrFI CCNGG 9 cut(s) 14, 25, 266, 515, 559, 631, 778, 829, 830
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 4 cut(s) 122, 637, 670, 751
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 295
BplI GAGNNNNNCTC 2 cut(s) 733, 765
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 105
BpuMI CCSGG 7 cut(s) 266, 515, 559, 631, 778, 829, 830
BsaI GGTCTC 1 cut(s) 557
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 24, 137, 265, 386, 835
Bse1I ACTGG 2 cut(s) 803, 840
Bse3DI GCAATG 1 cut(s) 349
BseBI CCWGG 2 cut(s) 14, 25
BseGI GGATG 3 cut(s) 231, 274, 842
BseLI CCNNNNNNNGG 6 cut(s) 19, 24, 137, 265, 386, 835
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 2 cut(s) 803, 840
BseXI GCAGC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 7 cut(s) 17, 23, 143, 258, 284, 554, 669
BshNI GGYRCC 2 cut(s) 419, 653
BsiHKCI CYCGRG 2 cut(s) 692, 828
BsiSI CCGG 7 cut(s) 266, 380, 515, 558, 631, 778, 829
BslFI GGGAC 4 cut(s) 180, 612, 760, 809
BslI CCNNNNNNNGG 6 cut(s) 19, 24, 137, 265, 386, 835
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 4 cut(s) 180, 612, 760, 809
BsnI GGCC 7 cut(s) 17, 23, 143, 258, 284, 554, 669
Bso31I GGTCTC 1 cut(s) 557
BsoBI CYCGRG 2 cut(s) 692, 828
Bsp1286I GDGCHC 1 cut(s) 828
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 5 cut(s) 208, 318, 587, 633, 838
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 3 cut(s) 164, 650, 739
BspANI GGCC 7 cut(s) 17, 23, 143, 258, 284, 554, 669
BspCNI CTCAG 1 cut(s) 674
BspFNI CGCG 1 cut(s) 164
BspHI TCATGA 2 cut(s) 321, 804
BspLI GGNNCC 6 cut(s) 142, 168, 231, 421, 655, 840
BspPI GGATC 5 cut(s) 216, 595, 641, 833, 846
BspT107I GGYRCC 2 cut(s) 419, 653
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 349
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 2 cut(s) 803, 840
BssMI GATC 5 cut(s) 208, 318, 587, 633, 838
BssT1I CCWWGG 3 cut(s) 18, 489, 765
Bst2UI CCWGG 2 cut(s) 14, 25
Bst4CI ACNGT 4 cut(s) 187, 336, 428, 774
Bst6I CTCTTC 2 cut(s) 337, 697
BstAUI TGTACA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 105, 299, 661
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 3 cut(s) 231, 274, 842
BstFNI CGCG 1 cut(s) 164
BstKTI GATC 5 cut(s) 211, 321, 590, 636, 841
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 5 cut(s) 208, 318, 587, 633, 838
BstMWI GCNNNNNNNGC 2 cut(s) 110, 551
BstNI CCWGG 2 cut(s) 14, 25
BstSCI CCNGG 9 cut(s) 12, 23, 264, 513, 557, 629, 776, 827, 828
BstSFI CTRYAG 1 cut(s) 293
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 7 cut(s) 17, 23, 143, 258, 284, 554, 669
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 3 cut(s) 231, 274, 842
Cac8I GCNNGC 1 cut(s) 111
CciI TCATGA 2 cut(s) 321, 804
Cfr13I GGNCC 3 cut(s) 141, 167, 229
Cfr9I CCCGGG 1 cut(s) 828
Csp6I GTAC 5 cut(s) 337, 420, 599, 654, 770
CviAII CATG 5 cut(s) 222, 247, 322, 577, 805
CviQI GTAC 5 cut(s) 337, 420, 599, 654, 770
DdeI CTNAG 3 cut(s) 105, 299, 661
DpnI GATC 5 cut(s) 210, 320, 589, 635, 840
DpnII GATC 5 cut(s) 208, 318, 587, 633, 838
Eam1104I CTCTTC 2 cut(s) 337, 697
EarI CTCTTC 2 cut(s) 337, 697
Eco130I CCWWGG 3 cut(s) 18, 489, 765
Eco147I AGGCCT 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 167, 229
Eco57I CTGAAG 1 cut(s) 386
Eco88I CYCGRG 2 cut(s) 692, 828
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 12, 23
EcoT14I CCWWGG 3 cut(s) 18, 489, 765
EcoT22I ATGCAT 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 828
ErhI CCWWGG 3 cut(s) 18, 489, 765
FaeI CATG 5 cut(s) 225, 250, 325, 580, 808
FaqI GGGAC 4 cut(s) 180, 612, 760, 809
FatI CATG 5 cut(s) 221, 246, 321, 576, 804
FauI CCCGC 2 cut(s) 157, 643
FauNDI CATATG 2 cut(s) 136, 717
FblI GTMKAC 2 cut(s) 252, 816
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 3 cut(s) 238, 281, 829
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 2 cut(s) 171, 260
GluI GCNGC 1 cut(s) 504
HaeIII GGCC 7 cut(s) 17, 23, 143, 258, 284, 554, 669
HapII CCGG 7 cut(s) 266, 380, 515, 558, 631, 778, 829
Hin1II CATG 5 cut(s) 225, 250, 325, 580, 808
HincII GTYRAC 2 cut(s) 253, 445
HindII GTYRAC 2 cut(s) 253, 445
HinfI GANTC 1 cut(s) 625
HpaII CCGG 7 cut(s) 266, 380, 515, 558, 631, 778, 829
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 4 cut(s) 45, 253, 445, 817
Hpy188I TCNGA 4 cut(s) 193, 536, 592, 664
Hpy188III TCNNGA 5 cut(s) 322, 457, 622, 805, 846
Hpy8I GTNNAC 4 cut(s) 45, 253, 445, 817
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 380, 397
HpyCH4III ACNGT 4 cut(s) 187, 336, 428, 774
HpyCH4V TGCA 2 cut(s) 576, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 551
HpyF3I CTNAG 3 cut(s) 105, 299, 661
Hsp92II CATG 5 cut(s) 225, 250, 325, 580, 808
KpnI GGTACC 2 cut(s) 423, 657
Kzo9I GATC 5 cut(s) 208, 318, 587, 633, 838
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 4 cut(s) 122, 637, 670, 751
MaeI CTAG 2 cut(s) 171, 260
MaeIII GTNAC 3 cut(s) 373, 389, 752
MalI GATC 5 cut(s) 210, 320, 589, 635, 840
MboI GATC 5 cut(s) 208, 318, 587, 633, 838
MboII GAAGA 3 cut(s) 300, 354, 714
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 1 cut(s) 828
MluCI AATT 2 cut(s) 234, 788
MlyI GAGTC 1 cut(s) 634
Mph1103I ATGCAT 1 cut(s) 723
MseI TTAA 2 cut(s) 36, 785
MslI CAYNNNNRTG 2 cut(s) 320, 678
MspI CCGG 7 cut(s) 266, 380, 515, 558, 631, 778, 829
MspR9I CCNGG 9 cut(s) 14, 25, 266, 515, 559, 631, 778, 829, 830
MvaI CCWGG 2 cut(s) 14, 25
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 110, 551
NciI CCSGG 7 cut(s) 266, 515, 559, 631, 778, 829, 830
NdeI CATATG 2 cut(s) 136, 717
NdeII GATC 5 cut(s) 208, 318, 587, 633, 838
NlaIII CATG 5 cut(s) 225, 250, 325, 580, 808
NlaIV GGNNCC 6 cut(s) 142, 168, 231, 421, 655, 840
NmuCI GTSAC 1 cut(s) 389
NsiI ATGCAT 1 cut(s) 723
PaeR7I CTCGAG 1 cut(s) 692
PagI TCATGA 2 cut(s) 321, 804
PceI AGGCCT 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PflFI GACNNNGTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 19
PfoI TCCNGGA 2 cut(s) 513, 776
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 12, 23
PspGI CCWGG 2 cut(s) 12, 23
PspN4I GGNNCC 6 cut(s) 142, 168, 231, 421, 655, 840
PspPI GGNCC 3 cut(s) 141, 167, 229
PspPPI RGGWCCY 1 cut(s) 167
PspXI VCTCGAGB 1 cut(s) 692
PsuI RGATCY 1 cut(s) 838
PsyI GACNNNGTC 1 cut(s) 800
RsaI GTAC 5 cut(s) 338, 421, 600, 655, 771
RsaNI GTAC 5 cut(s) 337, 420, 599, 654, 770
RseI CAYNNNNRTG 2 cut(s) 320, 678
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 36, 785
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 5 cut(s) 208, 318, 587, 633, 838
Sau96I GGNCC 3 cut(s) 141, 167, 229
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 9 cut(s) 14, 25, 266, 515, 559, 631, 778, 829, 830
SduI GDGCHC 1 cut(s) 828
SfaNI GCATC 4 cut(s) 122, 637, 670, 751
SfcI CTRYAG 1 cut(s) 293
Sfr274I CTCGAG 1 cut(s) 692
SinI GGWCC 2 cut(s) 167, 229
SlaI CTCGAG 1 cut(s) 692
SmaI CCCGGG 1 cut(s) 830
SmiMI CAYNNNNRTG 2 cut(s) 320, 678
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 2 cut(s) 234, 788
SseBI AGGCCT 1 cut(s) 17
SsiI CCGC 3 cut(s) 164, 650, 739
SspI AATATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 171, 260
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 9 cut(s) 12, 23, 264, 513, 557, 629, 776, 827, 828
StyI CCWWGG 3 cut(s) 18, 489, 765
TaaI ACNGT 4 cut(s) 187, 336, 428, 774
TaqI TCGA 8 cut(s) 153, 252, 279, 310, 636, 645, 678, 693
TasI AATT 2 cut(s) 234, 788
TatI WGTACW 1 cut(s) 336
Tru1I TTAA 2 cut(s) 36, 785
Tru9I TTAA 2 cut(s) 36, 785
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 210, 338, 416, 821
TspGWI ACGGA 1 cut(s) 563
TspMI CCCGGG 1 cut(s) 828
Tth111I GACNNNGTC 1 cut(s) 800
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 167, 229
XhoI CTCGAG 1 cut(s) 692
XmaI CCCGGG 1 cut(s) 828
XmiI GTMKAC 2 cut(s) 252, 816
XspI CTAG 2 cut(s) 171, 260
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.