Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 82 | 9.2e-16 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH | PF17917 | 156 - 244 | 2.1e-14 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH_2 | PF17919 | 156 - 215 | 1.9e-06 | RNase H-like domain found in reverse transcriptase |
| RNase_H | PF00075 | 291 - 369 | 2.2e-08 | RNase H |
| RVT_3 | PF13456 | 294 - 413 | 5e-22 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 502 - 557 | 6.5e-07 | Integrase zinc binding domain |
| rve | PF00665 | 579 - 672 | 2.4e-10 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 14, 1532 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 944 |
| Acc16I | TGCGCA | 1 cut(s) | 173 |
| Acc36I | ACCTGC | 4 cut(s) | 14, 658, 753, 1532 |
| Acc65I | GGTACC | 2 cut(s) | 558, 2252 |
| AccB1I | GGYRCC | 3 cut(s) | 26, 558, 2252 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1144 |
| AccI | GTMKAC | 5 cut(s) | 90, 948, 1021, 1806, 2415 |
| AcoI | YGGCCR | 3 cut(s) | 348, 1610, 1724 |
| AcsI | RAATTY | 2 cut(s) | 227, 728 |
| AcuI | CTGAAG | 1 cut(s) | 1048 |
| AcyI | GRCGYC | 1 cut(s) | 2085 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 322, 820, 1144, 1149, 1262, 1390, 1511, 2434, 2451 |
| AflIII | ACRYGT | 2 cut(s) | 421, 1125 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2025 |
| AjiI | CACGTC | 1 cut(s) | 424 |
| AleI | CACNNNNGTG | 3 cut(s) | 199, 1542, 1772 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1029, 1061 |
| Alw21I | GWGCWC | 1 cut(s) | 1690 |
| Alw26I | GTCTC | 3 cut(s) | 336, 680, 2156 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2548 |
| Ama87I | CYCGRG | 5 cut(s) | 233, 1032, 1149, 1286, 2427 |
| ApeKI | GCWGC | 4 cut(s) | 458, 773, 776, 1420 |
| ApoI | RAATTY | 2 cut(s) | 227, 728 |
| AseI | ATTAAT | 1 cut(s) | 701 |
| Asp718I | GGTACC | 2 cut(s) | 558, 2252 |
| AspLEI | GCGC | 2 cut(s) | 174, 2547 |
| AsuHPI | GGTGA | 7 cut(s) | 151, 631, 647, 1162, 1177, 1843, 2003 |
| AvaI | CYCGRG | 5 cut(s) | 233, 1032, 1149, 1286, 2427 |
| AvaII | GGWCC | 7 cut(s) | 325, 711, 1045, 1266, 1292, 1333, 2480 |
| AxyI | CCTNAGG | 1 cut(s) | 1592 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 373, 406, 1905, 1938 |
| BalI | TGGCCA | 1 cut(s) | 1612 |
| BamHI | GGATCC | 3 cut(s) | 847, 1354, 2437 |
| BanI | GGYRCC | 3 cut(s) | 26, 558, 2252 |
| BanII | GRGCYC | 1 cut(s) | 1570 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1874, 1906, 2399, 2431 |
| BauI | CACGAG | 2 cut(s) | 452, 1683 |
| BbsI | GAAGAC | 2 cut(s) | 148, 1420 |
| Bbv12I | GWGCWC | 1 cut(s) | 1690 |
| BbvI | GCAGC | 4 cut(s) | 445, 785, 788, 1432 |
| BceAI | ACGGC | 2 cut(s) | 1711, 1787 |
| BciVI | GTATCC | 1 cut(s) | 313 |
| BcoDI | GTCTC | 3 cut(s) | 336, 680, 2156 |
| BfaI | CTAG | 6 cut(s) | 593, 839, 906, 1040, 1296, 1385 |
| BfmI | CTRYAG | 4 cut(s) | 1022, 1418, 1462, 1894 |
| BfoI | RGCGCY | 1 cut(s) | 2548 |
| BfuAI | ACCTGC | 4 cut(s) | 14, 658, 753, 1532 |
| BfuI | GTATCC | 1 cut(s) | 313 |
| BisI | GCNGC | 7 cut(s) | 185, 351, 459, 774, 777, 1421, 2103 |
| BlsI | GCNGC | 7 cut(s) | 186, 352, 460, 775, 778, 1422, 2104 |
| BmcAI | AGTACT | 1 cut(s) | 2199 |
| Bme18I | GGWCC | 7 cut(s) | 325, 711, 1045, 1266, 1292, 1333, 2480 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2025 |
| BmeT110I | CYCGRG | 5 cut(s) | 233, 1032, 1149, 1286, 2427 |
| BmgBI | CACGTC | 1 cut(s) | 424 |
| BmrI | ACTGGG | 2 cut(s) | 1069, 2407 |
| BmsI | GCATC | 9 cut(s) | 171, 213, 927, 989, 1247, 2236, 2269, 2350, 2536 |
| BmuI | ACTGGG | 2 cut(s) | 1069, 2407 |
| BpiI | GAAGAC | 2 cut(s) | 148, 1420 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2332, 2364 |
| BpmI | CTGGAG | 1 cut(s) | 355 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1424 |
| BpuEI | CTTGAG | 1 cut(s) | 2312 |
| BsaAI | YACGTR | 2 cut(s) | 94, 880 |
| BsaHI | GRCGYC | 1 cut(s) | 2085 |
| BsaI | GGTCTC | 1 cut(s) | 2156 |
| BsaWI | WCCGGW | 3 cut(s) | 315, 1390, 1504 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 573, 603, 1115, 1145 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 322, 820, 1144, 1149, 1262, 1390, 1511, 2434, 2451 |
| Bse118I | RCCGGY | 2 cut(s) | 914, 1016 |
| Bse1I | ACTGG | 5 cut(s) | 328, 547, 588, 1075, 2402 |
| Bse21I | CCTNAGG | 1 cut(s) | 1592 |
| Bse3DI | GCAATG | 1 cut(s) | 1474 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 322, 820, 1144, 1149, 1262, 1390, 1511, 2434, 2451 |
| BseMI | GCAATG | 1 cut(s) | 1474 |
| BseMII | CTCAG | 3 cut(s) | 492, 976, 2274 |
| BseNI | ACTGG | 5 cut(s) | 328, 547, 588, 1075, 2402 |
| BseRI | GAGGAG | 2 cut(s) | 1523, 2309 |
| BseXI | GCAGC | 4 cut(s) | 445, 785, 788, 1432 |
| BseYI | CCCAGC | 2 cut(s) | 721, 2541 |
| BsgI | GTGCAG | 2 cut(s) | 302, 567 |
| BshNI | GGYRCC | 3 cut(s) | 26, 558, 2252 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1690 |
| BsiHKCI | CYCGRG | 5 cut(s) | 233, 1032, 1149, 1286, 2427 |
| BslFI | GGGAC | 8 cut(s) | 1279, 1305, 1791, 1892, 2211, 2359, 2408, 2466 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 322, 820, 1144, 1149, 1262, 1390, 1511, 2434, 2451 |
| BsmAI | GTCTC | 3 cut(s) | 336, 680, 2156 |
| BsmFI | GGGAC | 8 cut(s) | 1279, 1305, 1791, 1892, 2211, 2359, 2408, 2466 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| Bso31I | GGTCTC | 1 cut(s) | 2156 |
| BsoBI | CYCGRG | 5 cut(s) | 233, 1032, 1149, 1286, 2427 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1570, 1690 |
| Bsp19I | CCATGG | 2 cut(s) | 1721, 2531 |
| BspCNI | CTCAG | 3 cut(s) | 491, 975, 2273 |
| BspHI | TCATGA | 2 cut(s) | 1446, 2403 |
| BspMAI | CTGCAG | 1 cut(s) | 1422 |
| BspMI | ACCTGC | 4 cut(s) | 14, 658, 753, 1532 |
| BspT107I | GGYRCC | 3 cut(s) | 26, 558, 2252 |
| BspTNI | GGTCTC | 1 cut(s) | 2156 |
| BsrDI | GCAATG | 1 cut(s) | 1474 |
| BsrFI | RCCGGY | 2 cut(s) | 914, 1016 |
| BsrI | ACTGG | 5 cut(s) | 328, 547, 588, 1075, 2402 |
| BssAI | RCCGGY | 2 cut(s) | 914, 1016 |
| BssNI | GRCGYC | 1 cut(s) | 2085 |
| BssSI | CACGAG | 2 cut(s) | 452, 1683 |
| BssT1I | CCWWGG | 6 cut(s) | 466, 1143, 1721, 2088, 2364, 2531 |
| Bst2BI | CACGAG | 2 cut(s) | 452, 1683 |
| Bst4CI | ACNGT | 6 cut(s) | 643, 1312, 1782, 1895, 2027, 2373 |
| Bst6I | CTCTTC | 2 cut(s) | 2296, 2466 |
| BstACI | GRCGYC | 1 cut(s) | 2085 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 673 |
| BstBAI | YACGTR | 2 cut(s) | 94, 880 |
| BstC8I | GCNNGC | 3 cut(s) | 285, 916, 2549 |
| BstDEI | CTNAG | 7 cut(s) | 478, 962, 1424, 1592, 1986, 2260, 2326 |
| BstDSI | CCRYGG | 4 cut(s) | 1721, 1854, 2154, 2531 |
| BstEII | GGTNACC | 1 cut(s) | 1553 |
| BstH2I | RGCGCY | 1 cut(s) | 2548 |
| BstHHI | GCGC | 2 cut(s) | 174, 2547 |
| BstMAI | GTCTC | 3 cut(s) | 336, 680, 2156 |
| BstNSI | RCATGY | 2 cut(s) | 106, 1129 |
| BstPI | GGTNACC | 1 cut(s) | 1553 |
| BstSFI | CTRYAG | 4 cut(s) | 1022, 1418, 1462, 1894 |
| BstV1I | GCAGC | 4 cut(s) | 445, 785, 788, 1432 |
| BstV2I | GAAGAC | 2 cut(s) | 148, 1420 |
| BstX2I | RGATCY | 4 cut(s) | 847, 1354, 1989, 2437 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 721, 867, 1774 |
| BstYI | RGATCY | 4 cut(s) | 847, 1354, 1989, 2437 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1592 |
| BsuI | GTATCC | 1 cut(s) | 313 |
| BtgI | CCRYGG | 4 cut(s) | 1721, 1854, 2154, 2531 |
| BtgZI | GCGATG | 1 cut(s) | 1681 |
| BtrI | CACGTC | 1 cut(s) | 424 |
| BtsI | GCAGTG | 1 cut(s) | 1779 |
| BtsIMutI | CAGTG | 4 cut(s) | 540, 581, 1742, 1779 |
| BveI | ACCTGC | 4 cut(s) | 14, 658, 753, 1532 |
| Cac8I | GCNNGC | 3 cut(s) | 285, 916, 2549 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2548 |
| CciI | TCATGA | 2 cut(s) | 1446, 2403 |
| CfoI | GCGC | 2 cut(s) | 174, 2547 |
| Cfr10I | RCCGGY | 2 cut(s) | 914, 1016 |
| Cfr9I | CCCGGG | 2 cut(s) | 1149, 2427 |
| CseI | GACGC | 2 cut(s) | 1229, 2093 |
| CsiI | ACCWGGT | 1 cut(s) | 1089 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1802, 1837 |
| DdeI | CTNAG | 7 cut(s) | 478, 962, 1424, 1592, 1986, 2260, 2326 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 944 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2025 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 944 |
| EaeI | YGGCCR | 3 cut(s) | 348, 1610, 1724 |
| Eam1104I | CTCTTC | 2 cut(s) | 2296, 2466 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2025 |
| EarI | CTCTTC | 2 cut(s) | 2296, 2466 |
| Eco130I | CCWWGG | 6 cut(s) | 466, 1143, 1721, 2088, 2364, 2531 |
| Eco147I | AGGCCT | 1 cut(s) | 1142 |
| Eco24I | GRGCYC | 1 cut(s) | 1570 |
| Eco31I | GGTCTC | 1 cut(s) | 2156 |
| Eco32I | GATATC | 1 cut(s) | 736 |
| Eco47I | GGWCC | 7 cut(s) | 325, 711, 1045, 1266, 1292, 1333, 2480 |
| Eco57I | CTGAAG | 1 cut(s) | 1048 |
| Eco81I | CCTNAGG | 1 cut(s) | 1592 |
| Eco88I | CYCGRG | 5 cut(s) | 233, 1032, 1149, 1286, 2427 |
| Eco91I | GGTNACC | 1 cut(s) | 1553 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1292, 2092, 2453, 2480 |
| EcoO65I | GGTNACC | 1 cut(s) | 1553 |
| EcoRI | GAATTC | 1 cut(s) | 728 |
| EcoRV | GATATC | 1 cut(s) | 736 |
| EcoT14I | CCWWGG | 6 cut(s) | 466, 1143, 1721, 2088, 2364, 2531 |
| EcoT22I | ATGCAT | 2 cut(s) | 2322, 2529 |
| EcoT38I | GRGCYC | 1 cut(s) | 1570 |
| ErhI | CCWWGG | 6 cut(s) | 466, 1143, 1721, 2088, 2364, 2531 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 191, 223 |
| FaqI | GGGAC | 8 cut(s) | 1279, 1305, 1791, 1892, 2211, 2359, 2408, 2466 |
| FauI | CCCGC | 2 cut(s) | 2242, 2491 |
| FauNDI | CATATG | 1 cut(s) | 2316 |
| FblI | GTMKAC | 5 cut(s) | 90, 948, 1021, 1806, 2415 |
| Fnu4HI | GCNGC | 7 cut(s) | 185, 351, 459, 774, 777, 1421, 2103 |
| FriOI | GRGCYC | 1 cut(s) | 1570 |
| Fsp4HI | GCNGC | 7 cut(s) | 185, 351, 459, 774, 777, 1421, 2103 |
| FspBI | CTAG | 6 cut(s) | 593, 839, 906, 1040, 1296, 1385 |
| FspI | TGCGCA | 1 cut(s) | 173 |
| GlaI | GCGC | 2 cut(s) | 173, 2546 |
| GluI | GCNGC | 7 cut(s) | 185, 351, 459, 774, 777, 1421, 2103 |
| GsaI | CCCAGC | 2 cut(s) | 725, 2545 |
| GsuI | CTGGAG | 1 cut(s) | 355 |
| HaeII | RGCGCY | 1 cut(s) | 2548 |
| HgaI | GACGC | 2 cut(s) | 1229, 2093 |
| HhaI | GCGC | 2 cut(s) | 174, 2547 |
| Hin1I | GRCGYC | 1 cut(s) | 2085 |
| Hin6I | GCGC | 2 cut(s) | 172, 2545 |
| HinP1I | GCGC | 2 cut(s) | 172, 2545 |
| HincII | GTYRAC | 1 cut(s) | 49 |
| HindII | GTYRAC | 1 cut(s) | 49 |
| HindIII | AAGCTT | 2 cut(s) | 1341, 2075 |
| HinfI | GANTC | 9 cut(s) | 42, 258, 363, 497, 551, 794, 1070, 1905, 2224 |
| HphI | GGTGA | 7 cut(s) | 151, 631, 647, 1162, 1177, 1843, 2003 |
| Hpy188I | TCNGA | 9 cut(s) | 224, 502, 793, 847, 965, 1318, 1904, 2191, 2263 |
| Hpy99I | CGWCG | 3 cut(s) | 428, 1847, 2087 |
| HpyAV | CCTTC | 3 cut(s) | 487, 813, 982 |
| HpyCH4III | ACNGT | 6 cut(s) | 643, 1312, 1782, 1895, 2027, 2373 |
| HpyCH4IV | ACGT | 3 cut(s) | 93, 423, 879 |
| HpyF3I | CTNAG | 7 cut(s) | 478, 962, 1424, 1592, 1986, 2260, 2326 |
| HpySE526I | ACGT | 3 cut(s) | 93, 423, 879 |
| Hsp92I | GRCGYC | 1 cut(s) | 2085 |
| HspAI | GCGC | 2 cut(s) | 172, 2545 |
| KpnI | GGTACC | 2 cut(s) | 562, 2256 |
| KroI | GCCGGC | 1 cut(s) | 914 |
| KroNI | GCCGGC | 1 cut(s) | 916 |
| LmnI | GCTCC | 3 cut(s) | 911, 1565, 2296 |
| Lsp1109I | GCAGC | 4 cut(s) | 445, 785, 788, 1432 |
| LweI | GCATC | 9 cut(s) | 171, 213, 927, 989, 1247, 2236, 2269, 2350, 2536 |
| MabI | ACCWGGT | 1 cut(s) | 1089 |
| MaeI | CTAG | 6 cut(s) | 593, 839, 906, 1040, 1296, 1385 |
| MaeII | ACGT | 3 cut(s) | 93, 423, 879 |
| MaeIII | GTNAC | 6 cut(s) | 536, 1498, 1514, 1553, 1921, 2351 |
| MboII | GAAGA | 8 cut(s) | 148, 391, 1054, 1425, 1894, 2071, 2313, 2483 |
| MflI | RGATCY | 4 cut(s) | 847, 1354, 1989, 2437 |
| MhlI | GDGCHC | 2 cut(s) | 1570, 1690 |
| MlsI | TGGCCA | 1 cut(s) | 1612 |
| MluCI | AATT | 8 cut(s) | 227, 291, 404, 702, 728, 927, 1359, 2387 |
| MluNI | TGGCCA | 1 cut(s) | 1612 |
| MlyI | GAGTC | 5 cut(s) | 36, 491, 560, 1914, 2233 |
| MmeI | TCCRAC | 2 cut(s) | 202, 918 |
| Mox20I | TGGCCA | 1 cut(s) | 1612 |
| Mph1103I | ATGCAT | 2 cut(s) | 2322, 2529 |
| MroNI | GCCGGC | 1 cut(s) | 914 |
| MscI | TGGCCA | 1 cut(s) | 1612 |
| MseI | TTAA | 5 cut(s) | 14, 189, 701, 705, 2384 |
| MslI | CAYNNNNRTG | 5 cut(s) | 199, 1445, 1542, 1772, 2277 |
| Msp20I | TGGCCA | 1 cut(s) | 1612 |
| MspA1I | CMGCKG | 2 cut(s) | 446, 1098 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| NaeI | GCCGGC | 1 cut(s) | 916 |
| NcoI | CCATGG | 2 cut(s) | 1721, 2531 |
| NdeI | CATATG | 1 cut(s) | 2316 |
| NgoMIV | GCCGGC | 1 cut(s) | 914 |
| NmeAIII | GCCGAG | 1 cut(s) | 1959 |
| NmuCI | GTSAC | 3 cut(s) | 1498, 1514, 1921 |
| NsbI | TGCGCA | 1 cut(s) | 173 |
| NsiI | ATGCAT | 2 cut(s) | 2322, 2529 |
| NspI | RCATGY | 2 cut(s) | 106, 1129 |
| OliI | CACNNNNGTG | 3 cut(s) | 199, 1542, 1772 |
| PacI | TTAATTAA | 1 cut(s) | 705 |
| PaeR7I | CTCGAG | 1 cut(s) | 1286 |
| PagI | TCATGA | 2 cut(s) | 1446, 2403 |
| PaqCI | CACCTGC | 2 cut(s) | 14, 1532 |
| PceI | AGGCCT | 1 cut(s) | 1142 |
| PciI | ACATGT | 1 cut(s) | 1125 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1284, 1908, 2241 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PdiI | GCCGGC | 1 cut(s) | 916 |
| PfeI | GAWTC | 4 cut(s) | 258, 363, 794, 1070 |
| PflFI | GACNNNGTC | 1 cut(s) | 2399 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1144 |
| PfoI | TCCNGGA | 3 cut(s) | 2112, 2444, 2499 |
| PkrI | GCNGC | 7 cut(s) | 186, 352, 460, 775, 778, 1422, 2104 |
| PleI | GAGTC | 5 cut(s) | 36, 491, 559, 1913, 2232 |
| PpsI | GAGTC | 5 cut(s) | 36, 491, 559, 1913, 2232 |
| Ppu21I | YACGTR | 2 cut(s) | 94, 880 |
| PpuMI | RGGWCCY | 2 cut(s) | 1292, 2480 |
| PscI | ACATGT | 1 cut(s) | 1125 |
| PshBI | ATTAAT | 1 cut(s) | 701 |
| Psp5II | RGGWCCY | 2 cut(s) | 1292, 2480 |
| PspEI | GGTNACC | 1 cut(s) | 1553 |
| PspFI | CCCAGC | 2 cut(s) | 721, 2541 |
| PspPPI | RGGWCCY | 2 cut(s) | 1292, 2480 |
| PspXI | VCTCGAGB | 1 cut(s) | 1286 |
| PstI | CTGCAG | 1 cut(s) | 1422 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2548 |
| PsuI | RGATCY | 4 cut(s) | 847, 1354, 1989, 2437 |
| PsyI | GACNNNGTC | 1 cut(s) | 2399 |
| RseI | CAYNNNNRTG | 5 cut(s) | 199, 1445, 1542, 1772, 2277 |
| SaqAI | TTAA | 5 cut(s) | 14, 189, 701, 705, 2384 |
| SatI | GCNGC | 7 cut(s) | 185, 351, 459, 774, 777, 1421, 2103 |
| ScaI | AGTACT | 1 cut(s) | 2199 |
| SchI | GAGTC | 5 cut(s) | 36, 491, 560, 1914, 2233 |
| SduI | GDGCHC | 2 cut(s) | 1570, 1690 |
| SexAI | ACCWGGT | 1 cut(s) | 1089 |
| SfaNI | GCATC | 9 cut(s) | 171, 213, 927, 989, 1247, 2236, 2269, 2350, 2536 |
| SfcI | CTRYAG | 4 cut(s) | 1022, 1418, 1462, 1894 |
| Sfr274I | CTCGAG | 1 cut(s) | 1286 |
| SinI | GGWCC | 7 cut(s) | 325, 711, 1045, 1266, 1292, 1333, 2480 |
| SlaI | CTCGAG | 1 cut(s) | 1286 |
| SmaI | CCCGGG | 2 cut(s) | 1151, 2429 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 199, 1445, 1542, 1772, 2277 |
| SmlI | CTYRAG | 2 cut(s) | 1286, 2291 |
| SmoI | CTYRAG | 2 cut(s) | 1286, 2291 |
| SrfI | GCCCGGGC | 1 cut(s) | 1151 |
| Sse9I | AATT | 8 cut(s) | 227, 291, 404, 702, 728, 927, 1359, 2387 |
| SseBI | AGGCCT | 1 cut(s) | 1142 |
| SspI | AATATT | 1 cut(s) | 1323 |
| SspMI | CTAG | 6 cut(s) | 593, 839, 906, 1040, 1296, 1385 |
| StuI | AGGCCT | 1 cut(s) | 1142 |
| StyI | CCWWGG | 6 cut(s) | 466, 1143, 1721, 2088, 2364, 2531 |
| TaaI | ACNGT | 6 cut(s) | 643, 1312, 1782, 1895, 2027, 2373 |
| TaiI | ACGT | 3 cut(s) | 96, 426, 882 |
| TasI | AATT | 8 cut(s) | 227, 291, 404, 702, 728, 927, 1359, 2387 |
| TatI | WGTACW | 2 cut(s) | 519, 2197 |
| TauI | GCSGC | 3 cut(s) | 187, 353, 2105 |
| TfiI | GAWTC | 4 cut(s) | 258, 363, 794, 1070 |
| Tru1I | TTAA | 5 cut(s) | 14, 189, 701, 705, 2384 |
| Tru9I | TTAA | 5 cut(s) | 14, 189, 701, 705, 2384 |
| TscAI | CASTG | 4 cut(s) | 547, 588, 1742, 1779 |
| TseFI | GTSAC | 3 cut(s) | 1498, 1514, 1921 |
| TseI | GCWGC | 4 cut(s) | 458, 773, 776, 1420 |
| Tsp45I | GTSAC | 3 cut(s) | 1498, 1514, 1921 |
| TspDTI | ATGAA | 6 cut(s) | 355, 1335, 1463, 2420, 2485, 2522 |
| TspGWI | ACGGA | 3 cut(s) | 1544, 1871, 1940 |
| TspMI | CCCGGG | 2 cut(s) | 1149, 2427 |
| TspRI | CASTG | 4 cut(s) | 547, 588, 1742, 1779 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2399 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1144 |
| VpaK11BI | GGWCC | 7 cut(s) | 325, 711, 1045, 1266, 1292, 1333, 2480 |
| VspI | ATTAAT | 1 cut(s) | 701 |
| XapI | RAATTY | 2 cut(s) | 227, 728 |
| XceI | RCATGY | 2 cut(s) | 106, 1129 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 864, 1624 |
| XhoI | CTCGAG | 1 cut(s) | 1286 |
| XmaI | CCCGGG | 2 cut(s) | 1149, 2427 |
| XmiI | GTMKAC | 5 cut(s) | 90, 948, 1021, 1806, 2415 |
| XspI | CTAG | 6 cut(s) | 593, 839, 906, 1040, 1296, 1385 |
| ZrmI | AGTACT | 1 cut(s) | 2199 |
| Zsp2I | ATGCAT | 2 cut(s) | 2322, 2529 |