Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

66700133 .. 66701257

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00216010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGACAGGGGCTACTTCGGCCCACACTTGTGATGATGACGCCGACGGATTTTCGAGGTCTTGCCACAAATGCCAACAGTTTGCAGATCTCCCACATGCACGGCAGAACCGTCGTCGGTCATCATCGGACCATGGATTCACTCCACGTGGGGCCTCGATTTGATGGGAAAGTTCCAAACCGCCAAGGGCCGTTCAAATACATCATTGTTGCCATCGACTACAACAGCAAGTGGATAGAGGCGGAACCACCGACGGCAATAACTACCGCTAAGGTAATTCACTTCCTCTCGGAAGAACATCTACCGCCGCTATGGTGTCCCACATACAATCATTACGTACAACGGCACGCAGTTCAACAACAAGGAACTCATCTCCTTTACCGCCAACTTAGGCACCAAATTGCGCTTTGCATCCGTCGCCCATCCCCAAACCAACGGCCAGGTCGAGCGACAAACAAGATCATCAAGAAGTCGCTAAAAAAGAAACTCGACGACGCCAAGGGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

10.43

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AciI	CCGC	6 cut(s)	181, 242, 267, 305, 308, 382
AcoI	YGGCCR	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	148
AcyI	GRCGYC	2 cut(s)	41, 495
AfaI	GTAC	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	196, 356
AjnI	CCWGG	1 cut(s)	439
AleI	CACNNNNGTG	1 cut(s)	29
AoxI	GGCC	4 cut(s)	20, 152, 188, 437
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	4 cut(s)	21, 129, 152, 188
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbrPI	CACGTG	1 cut(s)	148
BccI	CCATC	3 cut(s)	158, 221, 430
BceAI	ACGGC	5 cut(s)	118, 175, 270, 359, 452
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	441
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	4 cut(s)	21, 129, 152, 188
BmiI	GGNNCC	3 cut(s)	153, 246, 395
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	270
BsaAI	YACGTR	2 cut(s)	148, 337
BsaHI	GRCGYC	2 cut(s)	41, 495
BsaJI	CCNNGG	3 cut(s)	132, 184, 498
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	132, 184, 498
BseGI	GGATG	2 cut(s)	411, 422
BshFI	GGCC	4 cut(s)	22, 154, 190, 439
BshNI	GGYRCC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	4 cut(s)	22, 154, 190, 439
Bsp143I	GATC	2 cut(s)	87, 459
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	6 cut(s)	181, 242, 267, 305, 308, 382
BspANI	GGCC	4 cut(s)	22, 154, 190, 439
BspLI	GGNNCC	3 cut(s)	153, 246, 395
BspT107I	GGYRCC	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	132, 184, 498
BssMI	GATC	2 cut(s)	87, 459
BssNI	GRCGYC	2 cut(s)	41, 495
BssT1I	CCWWGG	3 cut(s)	132, 184, 498
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	80, 112
BstACI	GRCGYC	2 cut(s)	41, 495
BstBAI	YACGTR	2 cut(s)	148, 337
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	270, 389
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	411, 422
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	2 cut(s)	90, 462
BstMBI	GATC	2 cut(s)	87, 459
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 71, 417
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	439
BstSNI	TACGTA	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	4 cut(s)	22, 154, 190, 439
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	411, 422
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	406
Cfr13I	GGNCC	4 cut(s)	21, 129, 152, 188
CseI	GACGC	2 cut(s)	49, 503
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	97, 133
CviJI	RGCY	5 cut(s)	13, 22, 154, 190, 439
CviKI_1	RGCY	5 cut(s)	13, 22, 154, 190, 439
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	2 cut(s)	270, 389
DpnI	GATC	2 cut(s)	89, 461
DpnII	GATC	2 cut(s)	87, 459
EaeI	YGGCCR	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	257
Eco105I	TACGTA	1 cut(s)	337
Eco130I	CCWWGG	3 cut(s)	132, 184, 498
Eco47I	GGWCC	1 cut(s)	129
Eco72I	CACGTG	1 cut(s)	148
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	3 cut(s)	132, 184, 498
ErhI	CCWWGG	3 cut(s)	132, 184, 498
FaeI	CATG	2 cut(s)	100, 136
FaiI	YATR	5 cut(s)	98, 134, 313, 325, 508
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	96, 132
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	2 cut(s)	398, 409
Fsp4HI	GCNGC	1 cut(s)	308
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	4 cut(s)	22, 154, 190, 439
HgaI	GACGC	2 cut(s)	49, 503
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	2 cut(s)	41, 495
Hin1II	CATG	2 cut(s)	100, 136
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	129, 292
Hpy188III	TCNNGA	1 cut(s)	466
Hpy99I	CGWCG	7 cut(s)	49, 116, 119, 256, 420, 494, 497
HpyCH4III	ACNGT	2 cut(s)	80, 112
HpyCH4IV	ACGT	2 cut(s)	147, 336
HpyCH4V	TGCA	3 cut(s)	85, 100, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 71, 417
HpyF3I	CTNAG	2 cut(s)	270, 389
HpySE526I	ACGT	2 cut(s)	147, 336
Hsp92I	GRCGYC	2 cut(s)	41, 495
Hsp92II	CATG	2 cut(s)	100, 136
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	2 cut(s)	87, 459
LpnPI	CCDG	2 cut(s)	426, 453
LweI	GCATC	1 cut(s)	420
MaeII	ACGT	2 cut(s)	147, 336
MalI	GATC	2 cut(s)	89, 461
MboI	GATC	2 cut(s)	87, 459
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	2 cut(s)	276, 399
MnlI	CCTC	4 cut(s)	50, 165, 232, 296
MslI	CAYNNNNRTG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 71, 417
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	87, 459
NlaIII	CATG	2 cut(s)	100, 136
NlaIV	GGNNCC	3 cut(s)	153, 246, 395
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 442
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	148
PmlI	CACGTG	1 cut(s)	148
Ppu21I	YACGTR	2 cut(s)	148, 337
Psp6I	CCWGG	1 cut(s)	439
PspCI	CACGTG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	3 cut(s)	153, 246, 395
PspPI	GGNCC	4 cut(s)	21, 129, 152, 188
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	87, 459
Sau96I	GGNCC	4 cut(s)	21, 129, 152, 188
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	5 cut(s)	61, 150, 276, 339, 445
SfaNI	GCATC	1 cut(s)	420
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	29
SnaBI	TACGTA	1 cut(s)	337
Sse9I	AATT	2 cut(s)	276, 399
SsiI	CCGC	6 cut(s)	181, 242, 267, 305, 308, 382
StyD4I	CCNGG	1 cut(s)	439
StyI	CCWWGG	3 cut(s)	132, 184, 498
TaaI	ACNGT	2 cut(s)	80, 112
TaiI	ACGT	2 cut(s)	150, 339
TaqI	TCGA	5 cut(s)	55, 157, 216, 445, 489
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	276, 399
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	62, 404
VpaK11BI	GGWCC	1 cut(s)	129
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.