Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

14417112 .. 14421278

Gene Structure 4167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCGTGTATCTCTCCCGAAATTATCACTCATAAGTCGACCATGAAACCCTCCTTTTATCCCATCAAGCAAAAGCGGAGGGCCTTTGATGAGGAAAAGTACCATGCAATAGGAGAGGAGGTTGCAAAACTCCGGGCATTGGATTCATCCGCCAGGTCGTCTATCCCCGTGGATCTCCAATTTAGTAATGGTCAAGAAGCCCGCGGCAAGTGGCGGATGTGTGTCGACTTCAAAAATCTCAACAAGGCATGCCCAAAGGATAGTTTCCCGCTACCTCGTATCGATCGGCTAGTTGATGCAACCGCCGGACATGAGCTCCTCGGCATGATGGACGCGTTCTCCGGATATAATCGATCAAGATGCACCCCGCCGACCGAGAATGCACCACCTTCACCACCGACAAAGGCCTCTCATCGCTACAATGTCATGCCTTTCGGTCCGAAGAACGCCGGTGCAACTTACCGCGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

157

Amino Acids

17.6

Weight (kDa)

9.59

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	38, 225
AccII	CGCG	3 cut(s)	204, 335, 465
AccIII	TCCGGA	1 cut(s)	341
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	466
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	3 cut(s)	81, 405, 466
AspS9I	GGNCC	2 cut(s)	81, 437
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BccI	CCATC	2 cut(s)	71, 322
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	134
BfaI	CTAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	205, 466
BlsI	GCNGC	2 cut(s)	206, 467
Bme1390I	CCNGG	2 cut(s)	134, 154
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	81, 437
BmrFI	CCNGG	2 cut(s)	134, 154
BmsI	GCATC	2 cut(s)	286, 350
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	2 cut(s)	282, 352
BsaJI	CCNNGG	4 cut(s)	168, 202, 319, 463
BsaWI	WCCGGW	1 cut(s)	341
BsaXI	ACNNNNNCTCC	6 cut(s)	105, 135, 300, 323, 330, 353
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	449
BseAI	TCCGGA	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	154
BseCI	ATCGAT	2 cut(s)	282, 352
BseDI	CCNNGG	4 cut(s)	168, 202, 319, 463
BseGI	GGATG	2 cut(s)	146, 222
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	131, 308
BseX3I	CGGCCG	1 cut(s)	466
Bsh1236I	CGCG	3 cut(s)	204, 335, 465
Bsh1285I	CGRYCG	3 cut(s)	286, 375, 469
BshFI	GGCC	3 cut(s)	83, 407, 468
BshVI	ATCGAT	2 cut(s)	282, 352
BsiEI	CGRYCG	3 cut(s)	286, 375, 469
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	133, 306, 342, 450
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	3 cut(s)	83, 407, 468
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	3 cut(s)	172, 283, 353
BspANI	GGCC	3 cut(s)	83, 407, 468
BspDI	ATCGAT	2 cut(s)	282, 352
BspEI	TCCGGA	1 cut(s)	341
BspFNI	CGCG	3 cut(s)	204, 335, 465
BspPI	GGATC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	4 cut(s)	168, 202, 319, 463
BssMI	GATC	3 cut(s)	172, 283, 353
Bst2UI	CCWGG	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	202, 250
BstDSI	CCRYGG	3 cut(s)	168, 202, 463
BstF5I	GGATG	2 cut(s)	146, 222
BstFNI	CGCG	3 cut(s)	204, 335, 465
BstKTI	GATC	3 cut(s)	175, 286, 356
BstMBI	GATC	3 cut(s)	172, 283, 353
BstMCI	CGRYCG	3 cut(s)	286, 375, 469
BstNI	CCWGG	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	132, 152
BstUI	CGCG	3 cut(s)	204, 335, 465
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BstZI	CGGCCG	1 cut(s)	466
Bsu15I	ATCGAT	2 cut(s)	282, 352
BsuRI	GGCC	3 cut(s)	83, 407, 468
BsuTUI	ATCGAT	2 cut(s)	282, 352
BtgI	CCRYGG	3 cut(s)	168, 202, 463
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	146, 222
Cac8I	GCNNGC	2 cut(s)	202, 250
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	81, 437
Cfr42I	CCGCGG	2 cut(s)	205, 466
ClaI	ATCGAT	2 cut(s)	282, 352
CpoI	CGGWCCG	1 cut(s)	437
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	100
CspI	CGGWCCG	1 cut(s)	437
CviAII	CATG	6 cut(s)	43, 104, 249, 311, 325, 427
CviJI	RGCY	6 cut(s)	83, 200, 289, 316, 407, 468
CviKI_1	RGCY	6 cut(s)	83, 200, 289, 316, 407, 468
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	3 cut(s)	174, 285, 355
DpnII	GATC	3 cut(s)	172, 283, 353
EaeI	YGGCCR	1 cut(s)	466
EagI	CGGCCG	1 cut(s)	466
EciI	GGCGGA	2 cut(s)	139, 229
Ecl136II	GAGCTC	1 cut(s)	316
EclXI	CGGCCG	1 cut(s)	466
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	437
Eco52I	CGGCCG	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	6 cut(s)	46, 107, 252, 314, 328, 430
FaiI	YATR	8 cut(s)	33, 44, 105, 250, 312, 326, 348, 428
FatI	CATG	6 cut(s)	42, 103, 248, 310, 324, 426
FauI	CCCGC	3 cut(s)	209, 276, 375
FblI	GTMKAC	2 cut(s)	38, 225
Fnu4HI	GCNGC	2 cut(s)	205, 466
FokI	GGATG	2 cut(s)	133, 229
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	205, 466
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	2 cut(s)	205, 466
HaeIII	GGCC	3 cut(s)	83, 407, 468
HapII	CCGG	4 cut(s)	133, 306, 342, 450
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	6 cut(s)	46, 107, 252, 314, 328, 430
HincII	GTYRAC	2 cut(s)	39, 226
HindII	GTYRAC	2 cut(s)	39, 226
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	4 cut(s)	133, 306, 342, 450
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	2 cut(s)	39, 226
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	4 cut(s)	17, 194, 342, 357
Hpy8I	GTNNAC	2 cut(s)	39, 226
HpyAV	CCTTC	1 cut(s)	399
HpyCH4V	TGCA	6 cut(s)	107, 125, 299, 363, 383, 455
Hsp92II	CATG	6 cut(s)	46, 107, 252, 314, 328, 430
Kpn2I	TCCGGA	1 cut(s)	341
KspI	CCGCGG	2 cut(s)	205, 466
Kzo9I	GATC	3 cut(s)	172, 283, 353
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	6 cut(s)	139, 146, 166, 319, 355, 463
LweI	GCATC	2 cut(s)	286, 350
MaeI	CTAG	1 cut(s)	290
MalI	GATC	3 cut(s)	174, 285, 355
MboI	GATC	3 cut(s)	172, 283, 353
MboII	GAAGA	1 cut(s)	454
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	2 cut(s)	21, 179
MluI	ACGCGT	1 cut(s)	333
MnlI	CCTC	8 cut(s)	61, 72, 85, 109, 112, 285, 329, 418
MroI	TCCGGA	1 cut(s)	341
MspA1I	CMGCKG	2 cut(s)	204, 465
MspI	CCGG	4 cut(s)	133, 306, 342, 450
MspR9I	CCNGG	2 cut(s)	134, 154
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	3 cut(s)	204, 335, 465
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	3 cut(s)	172, 283, 353
NlaIII	CATG	6 cut(s)	46, 107, 252, 314, 328, 430
NmeAIII	GCCGAG	1 cut(s)	300
NspI	RCATGY	1 cut(s)	252
PaeI	GCATGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	407
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	206, 467
Ple19I	CGATCG	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspPI	GGNCC	2 cut(s)	81, 437
PsuI	RGATCY	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
Rsr2I	CGGWCCG	1 cut(s)	437
RsrII	CGGWCCG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	318
SacII	CCGCGG	2 cut(s)	205, 466
SalI	GTCGAC	2 cut(s)	37, 224
SatI	GCNGC	2 cut(s)	205, 466
Sau3AI	GATC	3 cut(s)	172, 283, 353
Sau96I	GGNCC	2 cut(s)	81, 437
ScrFI	CCNGG	2 cut(s)	134, 154
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	5 cut(s)	123, 158, 277, 318, 391
SfaNI	GCATC	2 cut(s)	286, 350
Sfr303I	CCGCGG	2 cut(s)	205, 466
SgrAI	CRCCGGYG	1 cut(s)	449
SgrBI	CCGCGG	2 cut(s)	205, 466
SinI	GGWCC	1 cut(s)	437
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	2 cut(s)	21, 179
SseBI	AGGCCT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	132, 152
TaqI	TCGA	4 cut(s)	38, 225, 282, 352
TaqII	GACCGA	2 cut(s)	389, 425
TasI	AATT	2 cut(s)	21, 179
TauI	GCSGC	2 cut(s)	207, 468
TfiI	GAWTC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	59, 135
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	1 cut(s)	252
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmiI	GTMKAC	2 cut(s)	38, 225
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.