Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

46557806 .. 46558796

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTCGACGGCTCGGCCGCGCCAAGGCCTATGGCGTGGGAATCATCTTGACAAGGCCGGGGTACCGAACGTAGAGTACGTGCCGAAATTCAACTTCACGCCTTCAAACAACATGGCGATTGGCAAGTTACCAACCGCTAGGGGCCGGCTCAAGTACATCATCGTCACCATCGATTACAACAGCAAATGGATAGAAGCAGTAACCGCCGACGGGCAATCACTATCGCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

77

Amino Acids

8.59

Weight (kDa)

10.09

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	19
AciI	CCGC	3 cut(s)	17, 135, 204
AcoI	YGGCCR	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	3 cut(s)	63, 77, 155
AfiI	CCNNNNNNNGG	2 cut(s)	23, 210
AgsI	TTSAA	2 cut(s)	91, 105
AoxI	GGCC	4 cut(s)	14, 25, 54, 142
ApoI	RAATTY	1 cut(s)	86
Asp718I	GGTACC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	61
BccI	CCATC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	63, 143
BmrFI	CCNGG	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	22, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 210
Bse118I	RCCGGY	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	22, 57
BseLI	CCNNNNNNNGG	2 cut(s)	23, 210
BseX3I	CGGCCG	1 cut(s)	14
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	17
BshFI	GGCC	4 cut(s)	16, 27, 56, 144
BshNI	GGYRCC	1 cut(s)	61
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	17
BsiSI	CCGG	2 cut(s)	57, 145
BslI	CCNNNNNNNGG	2 cut(s)	23, 210
BsnI	GGCC	4 cut(s)	16, 27, 56, 144
BspACI	CCGC	3 cut(s)	17, 135, 204
BspANI	GGCC	4 cut(s)	16, 27, 56, 144
BspDI	ATCGAT	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	63, 143
BspT107I	GGYRCC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	22, 57
BssT1I	CCWWGG	1 cut(s)	22
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	21
BstMCI	CGRYCG	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	4 cut(s)	16, 27, 56, 144
BsuTUI	ATCGAT	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	142
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	3 cut(s)	62, 76, 154
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	6 cut(s)	11, 16, 27, 56, 144, 148
CviKI_1	RGCY	6 cut(s)	11, 16, 27, 56, 144, 148
CviQI	GTAC	3 cut(s)	62, 76, 154
EaeI	YGGCCR	1 cut(s)	14
EagI	CGGCCG	1 cut(s)	14
EclXI	CGGCCG	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	27
Eco52I	CGGCCG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	31, 113
FatI	CATG	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	17
HaeIII	GGCC	4 cut(s)	16, 27, 56, 144
HapII	CCGG	2 cut(s)	57, 145
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	57, 145
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	10, 212
HpyAV	CCTTC	1 cut(s)	111
HpyCH4IV	ACGT	2 cut(s)	69, 78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	69, 78
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	19
KpnI	GGTACC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	144
KroNI	GCCGGC	1 cut(s)	146
LpnPI	CCDG	2 cut(s)	70, 158
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	2 cut(s)	69, 78
MaeIII	GTNAC	3 cut(s)	126, 163, 199
MluCI	AATT	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	144
MspI	CCGG	2 cut(s)	57, 145
MspR9I	CCNGG	1 cut(s)	58
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	203
NaeI	GCCGGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	58
NgoMIV	GCCGGC	1 cut(s)	144
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	63, 143
NmuCI	GTSAC	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 168
PdiI	GCCGGC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	18
Ppu21I	YACGTR	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	63, 143
PspPI	GGNCC	1 cut(s)	142
PsrI	GAACNNNNNNTAC	2 cut(s)	59, 91
RsaI	GTAC	3 cut(s)	63, 77, 155
RsaNI	GTAC	3 cut(s)	62, 76, 154
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	2 cut(s)	72, 81
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	86
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	17, 135, 204
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	22
TaiI	ACGT	2 cut(s)	72, 81
TaqI	TCGA	2 cut(s)	5, 171
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.