Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

29732329 .. 29734249

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGTATCCCCAACCTACCGGAACGAGGTCCAATCTCTTATAGGCAAGGTGGCCACCCTGTCAAGATTCATCTCCAGGCTGACGGACAAGTGTACTCCTTTCTTCAAATTGCTAAAAACCCAACACGTCGAGGTGATAGCCTGGACAGCGGAGCACGAGGCTGCTTTCCTTGGTTTGAAGTCGTACTTGTCAGAGGTACCTCTACTCTACAAACCTGTTCCCGGAGAAATGCTCTACGTATATCTGGCGGCATCGTCAACTGCTGTGAGCTCAGTCCTGATTAGAAAGGACTCTGATTGCGAGTACCCAGTGTACTACGCTGGCAAAGGTTACACTGGTGCAGAATCCAAGTACCCGGACATTGAAAAAGTAGCACTGGCTCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCACTAATCACCCATTAAGGCAGGAACCACCTGAACCACTAGTCGCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTTGATGGAGCATCCAACAAGAAAACCAGCGGAGCCGGCATCCTGCTAATTAGCCCGGACGATCAAGTCTACAAGTACGCCCTCAAGTTTGCCTTCAAGGCATCCAACAATGCCACAGAATACGAGGCACTCATAGCAGGTCTGCAGATAGCCTGGGAACTAGGGATCCAGCACCTTAGTATCTTCAGTGATTCTCAGTTGGTCTTAAACCAGGTCAGCGGTAACTTCGAGGCAAAGGAGCCCCATATGTCCTCCTACCAGGCCTTGGCCCGGGCTTTAGTTCAGAGGTTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGACGCCCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACCTATGGGGCCACTAAAGTTGAAATACTCGCGGGACCTAGCACTTCCAAAACGGTGTCAGAAATATTTTCGGTGGATCACACAGCTTCATGGATGGACCCAATTTTGAAATACATGGCCGACGGCCTAGCACCGGATGATAAGGTCGAGGCCAGAAGACTACAGCTAAGGTCTGCTCGATACACGATCATGAATGGAAAACAGTACAGAAGAGGGCATTGCTTTCCCAACCTGAAGTGTGTAACACCGGAGGAGGGTCACAAAATAATGAAGGACATTCACGCTGGTGTATGTGGTAACCATGCCGGAGCCCGATCTCTTGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCTTGGCTCAAACTTGGGGTTTGGACTTGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAATACGCCATTGTTGCTGTGGACTACCAAACAAAGTGGGTCGAGGCAGAACCTCTCGTCGCCATCACCACGGAAAAATTTGACAATGATGATTTGAGGGCTTACACACAGAACCTGGGCACTAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACCAACGGTCAGGTCGAAGCTATCAACAAGATAATCAAGAAAATACTGAAAAAGAAGCTTGACGAAGCCAAGGGTCTTTGGGCTGCTAAACTCCCGGAGGTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

529

Amino Acids

58.68

Weight (kDa)

9.03

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	48 - 146	8.8e-19	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	77 - 150	3.3e-13	RNase H-like domain found in reverse transcriptase
RNase_H	PF00075	171 - 249	1.9e-07	RNase H
RVT_3	PF13456	174 - 293	8e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	584
Acc36I	ACCTGC	1 cut(s)	647
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	588
AccII	CGCG	1 cut(s)	929
AciI	CCGC	6 cut(s)	149, 248, 497, 549, 738, 929
AclWI	GGATC	5 cut(s)	482, 679, 692, 981, 1447
AcoI	YGGCCR	3 cut(s)	51, 1014, 1250
AcsI	RAATTY	1 cut(s)	1403
AcuI	CTGAAG	2 cut(s)	688, 1151
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	8 cut(s)	94, 185, 198, 305, 314, 353, 596, 1103
AfiI	CCNNNNNNNGG	7 cut(s)	25, 221, 784, 789, 902, 1030, 1151
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	7 cut(s)	106, 178, 365, 616, 920, 1006, 1327
AhdI	GACNNNNNGTC	1 cut(s)	1488
AhlI	ACTAGT	1 cut(s)	478
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	7 cut(s)	74, 140, 384, 671, 729, 777, 1440
AleI	CACNNNNGTG	2 cut(s)	1182, 1313
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	7 cut(s)	270, 403, 874, 983, 1063, 1502, 1540
AluI	AGCT	7 cut(s)	270, 403, 874, 983, 1063, 1502, 1540
Alw21I	GWGCWC	2 cut(s)	156, 272
AlwI	GGATC	5 cut(s)	482, 679, 692, 981, 1447
AlwNI	CAGNNNCTG	1 cut(s)	1441
Ama87I	CYCGRG	1 cut(s)	789
AoxI	GGCC	9 cut(s)	51, 780, 786, 906, 1014, 1021, 1047, 1250, 1263
ApeKI	GCWGC	2 cut(s)	161, 1565
ApoI	RAATTY	1 cut(s)	1403
Asp718I	GGTACC	1 cut(s)	196
AspS9I	GGNCC	5 cut(s)	28, 787, 906, 932, 994
AsuC2I	CCSGG	8 cut(s)	222, 356, 397, 575, 790, 791, 1469, 1577
AsuHPI	GGTGA	6 cut(s)	145, 424, 440, 802, 1384, 1466
AvaI	CYCGRG	1 cut(s)	789
AvaII	GGWCC	3 cut(s)	28, 932, 994
AxyI	CCTNAGG	1 cut(s)	1232
BaeGI	GKGCMC	1 cut(s)	1448
BaeI	ACNNNNGTAYC	2 cut(s)	682, 715
BalI	TGGCCA	2 cut(s)	53, 1252
BamHI	GGATCC	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	3 cut(s)	272, 762, 1210
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	1060
Bbv12I	GWGCWC	2 cut(s)	156, 272
BbvI	GCAGC	2 cut(s)	148, 1552
BccI	CCATC	3 cut(s)	518, 985, 1397
BceAI	ACGGC	1 cut(s)	1036
BciT130I	CCWGG	7 cut(s)	76, 142, 386, 673, 731, 779, 1442
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	8 cut(s)	222, 356, 397, 575, 790, 791, 1469, 1577
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	4 cut(s)	479, 680, 936, 1025
BfmI	CTRYAG	2 cut(s)	662, 1058
BfuAI	ACCTGC	1 cut(s)	647
BfuI	GTATCC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	3 cut(s)	162, 249, 1566
BlpI	GCTNAGC	1 cut(s)	870
BlsI	GCNGC	3 cut(s)	163, 250, 1567
Bme18I	GGWCC	3 cut(s)	28, 932, 994
BmeRI	GACNNNNNGTC	1 cut(s)	1488
BmeT110I	CYCGRG	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	5 cut(s)	28, 787, 906, 932, 994
BmiI	GGNNCC	9 cut(s)	198, 465, 553, 686, 759, 907, 933, 996, 1207
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	5 cut(s)	260, 539, 567, 629, 887
BmuI	ACTGGG	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	1060
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	1064
Bpu1102I	GCTNAGC	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	8 cut(s)	222, 356, 397, 575, 790, 791, 1469, 1577
BsaAI	YACGTR	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	861
BsaWI	WCCGGW	3 cut(s)	18, 1030, 1144
BsaXI	ACNNNNNCTCC	3 cut(s)	366, 396, 1571
Bsc4I	CCNNNNNNNGG	7 cut(s)	25, 221, 784, 789, 902, 1030, 1151
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	308, 340, 381
Bse21I	CCTNAGG	1 cut(s)	1232
Bse3DI	GCAATG	1 cut(s)	1114
BseBI	CCWGG	7 cut(s)	76, 142, 386, 673, 731, 779, 1442
BseGI	GGATG	5 cut(s)	530, 558, 620, 996, 1039
BseLI	CCNNNNNNNGG	7 cut(s)	25, 221, 784, 789, 902, 1030, 1151
BseMI	GCAATG	1 cut(s)	1114
BseMII	CTCAG	3 cut(s)	285, 418, 728
BseNI	ACTGG	3 cut(s)	308, 340, 381
BseRI	GAGGAG	1 cut(s)	1163
BseSI	GKGCMC	1 cut(s)	1448
BseXI	GCAGC	2 cut(s)	148, 1552
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	929
BshFI	GGCC	9 cut(s)	53, 782, 788, 908, 1016, 1023, 1049, 1252, 1265
BshNI	GGYRCC	1 cut(s)	196
BsiHKAI	GWGCWC	2 cut(s)	156, 272
BsiHKCI	CYCGRG	1 cut(s)	789
BslFI	GGGAC	2 cut(s)	945, 1332
BslI	CCNNNNNNNGG	7 cut(s)	25, 221, 784, 789, 902, 1030, 1151
BsmFI	GGGAC	2 cut(s)	945, 1332
BsnI	GGCC	9 cut(s)	53, 782, 788, 908, 1016, 1023, 1049, 1252, 1265
BsoBI	CYCGRG	1 cut(s)	789
Bsp1286I	GDGCHC	5 cut(s)	156, 272, 762, 1210, 1448
Bsp143I	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
Bsp1720I	GCTNAGC	1 cut(s)	870
BspACI	CCGC	6 cut(s)	149, 248, 497, 549, 738, 929
BspANI	GGCC	9 cut(s)	53, 782, 788, 908, 1016, 1023, 1049, 1252, 1265
BspCNI	CTCAG	3 cut(s)	284, 417, 727
BspFNI	CGCG	1 cut(s)	929
BspHI	TCATGA	1 cut(s)	1086
BspLI	GGNNCC	9 cut(s)	198, 465, 553, 686, 759, 907, 933, 996, 1207
BspMAI	CTGCAG	1 cut(s)	666
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	5 cut(s)	482, 679, 692, 981, 1447
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	1114
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	308, 340, 381
BssAI	RCCGGY	1 cut(s)	554
BssMI	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
BssNI	GRCGYC	1 cut(s)	861
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	4 cut(s)	169, 783, 1266, 1551
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	7 cut(s)	76, 142, 386, 673, 731, 779, 1442
Bst4CI	ACNGT	5 cut(s)	436, 952, 1101, 1323, 1490
Bst6I	CTCTTC	1 cut(s)	1102
BstACI	GRCGYC	1 cut(s)	861
BstBAI	YACGTR	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	322, 556, 876
BstDEI	CTNAG	8 cut(s)	271, 404, 695, 714, 870, 1064, 1232, 1449
BstDSI	CCRYGG	1 cut(s)	1395
BstEII	GGTNACC	1 cut(s)	1193
BstF5I	GGATG	5 cut(s)	530, 558, 620, 996, 1039
BstFNI	CGCG	1 cut(s)	929
BstKTI	GATC	7 cut(s)	490, 583, 687, 976, 1086, 1214, 1455
BstMBI	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 555, 617, 653, 875, 1340, 1469
BstNI	CCWGG	7 cut(s)	76, 142, 386, 673, 731, 779, 1442
BstPI	GGTNACC	1 cut(s)	1193
BstSFI	CTRYAG	2 cut(s)	662, 1058
BstSLI	GKGCMC	1 cut(s)	1448
BstSNI	TACGTA	1 cut(s)	238
BstUI	CGCG	1 cut(s)	929
BstV1I	GCAGC	2 cut(s)	148, 1552
BstV2I	GAAGAC	1 cut(s)	1060
BstX2I	RGATCY	3 cut(s)	487, 684, 1452
BstXI	CCANNNNNNTGG	2 cut(s)	507, 1315
BstYI	RGATCY	3 cut(s)	487, 684, 1452
Bsu36I	CCTNAGG	1 cut(s)	1232
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	9 cut(s)	53, 782, 788, 908, 1016, 1023, 1049, 1252, 1265
BtgI	CCRYGG	1 cut(s)	1395
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	5 cut(s)	530, 558, 620, 996, 1039
BtsI	GCAGTG	1 cut(s)	1320
BtsIMutI	CAGTG	5 cut(s)	315, 333, 374, 712, 1320
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	3 cut(s)	322, 556, 876
CaiI	CAGNNNCTG	1 cut(s)	1441
CciI	TCATGA	1 cut(s)	1086
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	5 cut(s)	28, 787, 906, 932, 994
Cfr9I	CCCGGG	1 cut(s)	789
CseI	GACGC	1 cut(s)	869
CsiI	ACCWGGT	1 cut(s)	729
Csp6I	GTAC	8 cut(s)	93, 184, 197, 304, 313, 352, 595, 1102
CspCI	CAANNNNNGTGG	4 cut(s)	898, 933, 1343, 1378
CviAII	CATG	5 cut(s)	987, 1012, 1087, 1199, 1258
CviQI	GTAC	8 cut(s)	93, 184, 197, 304, 313, 352, 595, 1102
DdeI	CTNAG	8 cut(s)	271, 404, 695, 714, 870, 1064, 1232, 1449
DpnI	GATC	7 cut(s)	489, 582, 686, 975, 1085, 1213, 1454
DpnII	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
DrdI	GACNNNNNNGTC	1 cut(s)	584
DriI	GACNNNNNGTC	1 cut(s)	1488
DseDI	GACNNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	3 cut(s)	51, 1014, 1250
Eam1104I	CTCTTC	1 cut(s)	1102
Eam1105I	GACNNNNNGTC	1 cut(s)	1488
EarI	CTCTTC	1 cut(s)	1102
EciI	GGCGGA	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	4 cut(s)	169, 783, 1266, 1551
Eco147I	AGGCCT	1 cut(s)	782
Eco24I	GRGCYC	3 cut(s)	272, 762, 1210
Eco47I	GGWCC	3 cut(s)	28, 932, 994
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	688, 1151
Eco81I	CCTNAGG	1 cut(s)	1232
Eco88I	CYCGRG	1 cut(s)	789
Eco91I	GGTNACC	1 cut(s)	1193
EcoICRI	GAGCTC	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	932
EcoO65I	GGTNACC	1 cut(s)	1193
EcoRII	CCWGG	7 cut(s)	74, 140, 384, 671, 729, 777, 1440
EcoT14I	CCWWGG	4 cut(s)	169, 783, 1266, 1551
EcoT38I	GRGCYC	3 cut(s)	272, 762, 1210
ErhI	CCWWGG	4 cut(s)	169, 783, 1266, 1551
FaeI	CATG	5 cut(s)	990, 1015, 1090, 1202, 1261
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 596, 628
FaqI	GGGAC	2 cut(s)	945, 1332
FatI	CATG	5 cut(s)	986, 1011, 1086, 1198, 1257
FauI	CCCGC	1 cut(s)	922
FauNDI	CATATG	1 cut(s)	765
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	162, 249, 1566
FokI	GGATG	5 cut(s)	517, 545, 607, 1003, 1046
FriOI	GRGCYC	3 cut(s)	272, 762, 1210
Fsp4HI	GCNGC	3 cut(s)	162, 249, 1566
FspBI	CTAG	4 cut(s)	479, 680, 936, 1025
GluI	GCNGC	3 cut(s)	162, 249, 1566
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	9 cut(s)	53, 782, 788, 908, 1016, 1023, 1049, 1252, 1265
HgaI	GACGC	1 cut(s)	869
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	5 cut(s)	990, 1015, 1090, 1202, 1261
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	1538
HinfI	GANTC	4 cut(s)	66, 290, 344, 710
HphI	GGTGA	6 cut(s)	145, 424, 440, 802, 1384, 1466
Hpy166II	GTNNAC	7 cut(s)	93, 258, 313, 589, 810, 1301, 1348
Hpy188I	TCNGA	5 cut(s)	193, 295, 407, 804, 958
Hpy188III	TCNNGA	4 cut(s)	63, 277, 1087, 1519
Hpy8I	GTNNAC	7 cut(s)	93, 258, 313, 589, 810, 1301, 1348
Hpy99I	CGWCG	3 cut(s)	131, 1022, 1388
HpyAV	CCTTC	2 cut(s)	622, 1162
HpyCH4III	ACNGT	5 cut(s)	436, 952, 1101, 1323, 1490
HpyCH4IV	ACGT	3 cut(s)	126, 237, 519
HpyCH4V	TGCA	3 cut(s)	341, 664, 1220
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 555, 617, 653, 875, 1340, 1469
HpyF3I	CTNAG	8 cut(s)	271, 404, 695, 714, 870, 1064, 1232, 1449
HpySE526I	ACGT	3 cut(s)	126, 237, 519
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	5 cut(s)	990, 1015, 1090, 1202, 1261
KpnI	GGTACC	1 cut(s)	200
KroI	GCCGGC	1 cut(s)	554
KroNI	GCCGGC	1 cut(s)	556
Kzo9I	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
LmnI	GCTCC	5 cut(s)	151, 527, 551, 757, 1205
Lsp1109I	GCAGC	2 cut(s)	148, 1552
LweI	GCATC	5 cut(s)	260, 539, 567, 629, 887
MabI	ACCWGGT	1 cut(s)	729
MaeI	CTAG	4 cut(s)	479, 680, 936, 1025
MaeII	ACGT	3 cut(s)	126, 237, 519
MaeIII	GTNAC	5 cut(s)	329, 740, 1138, 1154, 1193
MalI	GATC	7 cut(s)	489, 582, 686, 975, 1085, 1213, 1454
MboI	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
MboII	GAAGA	4 cut(s)	94, 694, 1065, 1119
MflI	RGATCY	3 cut(s)	487, 684, 1452
MhlI	GDGCHC	5 cut(s)	156, 272, 762, 1210, 1448
MlsI	TGGCCA	2 cut(s)	53, 1252
MluCI	AATT	4 cut(s)	107, 567, 999, 1403
MluNI	TGGCCA	2 cut(s)	53, 1252
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	558, 648
Mox20I	TGGCCA	2 cut(s)	53, 1252
MroNI	GCCGGC	1 cut(s)	554
MscI	TGGCCA	2 cut(s)	53, 1252
MseI	TTAA	2 cut(s)	455, 725
MslI	CAYNNNNRTG	3 cut(s)	1085, 1182, 1313
Msp20I	TGGCCA	2 cut(s)	53, 1252
MspA1I	CMGCKG	3 cut(s)	149, 549, 738
MvaI	CCWGG	7 cut(s)	76, 142, 386, 673, 731, 779, 1442
MvnI	CGCG	1 cut(s)	929
MwoI	GCNNNNNNNGC	7 cut(s)	146, 555, 617, 653, 875, 1340, 1469
NaeI	GCCGGC	1 cut(s)	556
NciI	CCSGG	8 cut(s)	222, 356, 397, 575, 790, 791, 1469, 1577
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
NgoMIV	GCCGGC	1 cut(s)	554
NlaIII	CATG	5 cut(s)	990, 1015, 1090, 1202, 1261
NlaIV	GGNNCC	9 cut(s)	198, 465, 553, 686, 759, 907, 933, 996, 1207
NmuCI	GTSAC	1 cut(s)	1154
OliI	CACNNNNGTG	2 cut(s)	1182, 1313
PagI	TCATGA	1 cut(s)	1086
PceI	AGGCCT	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	1494
PdiI	GCCGGC	1 cut(s)	556
PfeI	GAWTC	3 cut(s)	66, 344, 710
PflMI	CCANNNNNTGG	1 cut(s)	784
PfoI	TCCNGGA	2 cut(s)	220, 1575
PkrI	GCNGC	3 cut(s)	163, 250, 1567
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	932
Psp124BI	GAGCTC	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	7 cut(s)	74, 140, 384, 671, 729, 777, 1440
PspEI	GGTNACC	1 cut(s)	1193
PspGI	CCWGG	7 cut(s)	74, 140, 384, 671, 729, 777, 1440
PspN4I	GGNNCC	9 cut(s)	198, 465, 553, 686, 759, 907, 933, 996, 1207
PspPI	GGNCC	5 cut(s)	28, 787, 906, 932, 994
PspPPI	RGGWCCY	1 cut(s)	932
PstI	CTGCAG	1 cut(s)	666
PstNI	CAGNNNCTG	1 cut(s)	1441
PsuI	RGATCY	3 cut(s)	487, 684, 1452
RsaI	GTAC	8 cut(s)	94, 185, 198, 305, 314, 353, 596, 1103
RsaNI	GTAC	8 cut(s)	93, 184, 197, 304, 313, 352, 595, 1102
RseI	CAYNNNNRTG	3 cut(s)	1085, 1182, 1313
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	455, 725
SatI	GCNGC	3 cut(s)	162, 249, 1566
Sau3AI	GATC	7 cut(s)	487, 580, 684, 973, 1083, 1211, 1452
Sau96I	GGNCC	5 cut(s)	28, 787, 906, 932, 994
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	5 cut(s)	156, 272, 762, 1210, 1448
SexAI	ACCWGGT	1 cut(s)	729
SfaNI	GCATC	5 cut(s)	260, 539, 567, 629, 887
SfcI	CTRYAG	2 cut(s)	662, 1058
SinI	GGWCC	3 cut(s)	28, 932, 994
SmaI	CCCGGG	1 cut(s)	791
SmiMI	CAYNNNNRTG	3 cut(s)	1085, 1182, 1313
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SnaBI	TACGTA	1 cut(s)	238
SpeI	ACTAGT	1 cut(s)	478
SrfI	GCCCGGGC	1 cut(s)	791
Sse9I	AATT	4 cut(s)	107, 567, 999, 1403
SseBI	AGGCCT	1 cut(s)	782
SsiI	CCGC	6 cut(s)	149, 248, 497, 549, 738, 929
SspI	AATATT	1 cut(s)	963
SspMI	CTAG	4 cut(s)	479, 680, 936, 1025
SstI	GAGCTC	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	782
StyI	CCWWGG	4 cut(s)	169, 783, 1266, 1551
TaaI	ACNGT	5 cut(s)	436, 952, 1101, 1323, 1490
TaiI	ACGT	3 cut(s)	129, 240, 522
TaqI	TCGA	6 cut(s)	129, 747, 1044, 1075, 1368, 1497
TasI	AATT	4 cut(s)	107, 567, 999, 1403
TatI	WGTACW	3 cut(s)	92, 312, 1101
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	66, 344, 710
Tru1I	TTAA	2 cut(s)	455, 725
Tru9I	TTAA	2 cut(s)	455, 725
TscAI	CASTG	5 cut(s)	315, 340, 381, 712, 1320
TseFI	GTSAC	1 cut(s)	1154
TseI	GCWGC	2 cut(s)	161, 1565
Tsp45I	GTSAC	1 cut(s)	1154
TspDTI	ATGAA	4 cut(s)	58, 975, 1103, 1181
TspGWI	ACGGA	2 cut(s)	98, 1412
TspMI	CCCGGG	1 cut(s)	789
TspRI	CASTG	5 cut(s)	315, 340, 381, 712, 1320
Van91I	CCANNNNNTGG	1 cut(s)	784
VpaK11BI	GGWCC	3 cut(s)	28, 932, 994
XapI	RAATTY	1 cut(s)	1403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1264, 1342
XmaI	CCCGGG	1 cut(s)	789
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	4 cut(s)	479, 680, 936, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.