Rh1AG155000

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000250
Physical Location & Seq
Forward (+)
28972412 .. 28972843
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG155000.1

Sequence Viewer

Length: 432 bp
ATGAAAGCACCAACTCCAGGCATCCCCTTGAAGATCTATCTGGCCTCTACCAATGCAGCCGTGGGGGCATTGTTAGCACAAGATAGTGAGGCTGGGGAAGAATTTCCTATTTACAACGTGAGCAAGCTTTTGAGGGGAGCTGAAACACGGGCTGGGGAAGAATTTCCTATTTACAACGTGAGCAAGCTTTTGAGGGGAGCTGAAACACGCTACCCCAAAGCAGAAAGGCTTTGTTTAGCGCTCATTTATGCAGCACAGAGGCTGCGCCACTATTTTTTGACTCACAAGCTTCAACTTATGGTGAAGACTGATTTGGTCAGATATTTGCTGACGAGACAAATACTGTCAGGGCGGCTAGCAAGATGGCTACTCCAGTTGTCTGAGTTTGACATTGTATGTACGACACCAAAAGCCATTAAGGGCAAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

143

Amino Acids

16.07

Weight (kDa)

9.76

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH PF17917 51 - 129 1.7e-14 RNase H-like domain found in reverse transcriptase
RT_RNaseH_2 PF17919 52 - 98 4.3e-07 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 352
AcsI RAATTY 2 cut(s) 101, 161
AfaI GTAC 1 cut(s) 400
AfeI AGCGCT 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 31, 293
AjnI CCWGG 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 5 cut(s) 127, 140, 187, 200, 289
AluI AGCT 5 cut(s) 127, 140, 187, 200, 289
Alw26I GTCTC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 262
Aor51HI AGCGCT 1 cut(s) 240
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 3 cut(s) 56, 251, 262
ApoI RAATTY 2 cut(s) 101, 161
Asp700I GAANNNNTTC 2 cut(s) 102, 162
AspLEI GCGC 2 cut(s) 241, 267
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 3 cut(s) 68, 249, 263
BccI CCATC 1 cut(s) 357
BceAI ACGGC 2 cut(s) 44, 412
BciT130I CCWGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 242
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 33
BisI GCNGC 4 cut(s) 57, 252, 263, 353
BlsI GCNGC 4 cut(s) 58, 253, 264, 354
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 359
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 373
BseXI GCAGC 3 cut(s) 68, 249, 263
BseYI CCCAGC 2 cut(s) 92, 152
BshFI GGCC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 373
BspOI GCTAGC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 345
BstC8I GCNNGC 4 cut(s) 125, 185, 357, 425
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 2 cut(s) 241, 267
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 3 cut(s) 68, 249, 263
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 4 cut(s) 125, 185, 357, 425
CaiI CAGNNNCTG 1 cut(s) 262
CfoI GCGC 2 cut(s) 241, 267
Csp6I GTAC 1 cut(s) 399
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco47III AGCGCT 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 16
FaiI YATR 3 cut(s) 249, 299, 397
Fnu4HI GCNGC 4 cut(s) 57, 252, 263, 353
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 57, 252, 263, 353
FspBI CTAG 1 cut(s) 356
GlaI GCGC 2 cut(s) 240, 266
GluI GCNGC 4 cut(s) 57, 252, 263, 353
GsaI CCCAGC 2 cut(s) 96, 156
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 2 cut(s) 241, 267
Hin6I GCGC 2 cut(s) 239, 265
HinP1I GCGC 2 cut(s) 239, 265
HindIII AAGCTT 3 cut(s) 125, 185, 287
HinfI GANTC 1 cut(s) 280
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 2 cut(s) 320, 382
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 2 cut(s) 117, 177
HpyCH4V TGCA 2 cut(s) 56, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 2 cut(s) 117, 177
HspAI GCGC 2 cut(s) 239, 265
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 137, 197
LpnPI CCDG 7 cut(s) 3, 26, 30, 78, 138, 333, 386
Lsp1109I GCAGC 3 cut(s) 68, 249, 263
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 117, 177
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 4 cut(s) 43, 110, 170, 316
MflI RGATCY 1 cut(s) 33
MluCI AATT 2 cut(s) 101, 161
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 5 cut(s) 55, 82, 126, 186, 252
MroXI GAANNNNTTC 2 cut(s) 102, 162
MseI TTAA 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NdeII GATC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 355
PdmI GAANNNNTTC 2 cut(s) 102, 162
PkrI GCNGC 4 cut(s) 58, 253, 264, 354
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 2 cut(s) 92, 152
PspGI CCWGG 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 4 cut(s) 57, 252, 263, 353
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 18
SetI ASST 7 cut(s) 120, 129, 142, 180, 189, 202, 291
SfaNI GCATC 1 cut(s) 30
Sse9I AATT 2 cut(s) 101, 161
SsiI CCGC 1 cut(s) 352
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 2 cut(s) 120, 180
TasI AATT 2 cut(s) 101, 161
TauI GCSGC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseI GCWGC 3 cut(s) 56, 251, 262
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 101, 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmnI GAANNNNTTC 2 cut(s) 102, 162
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.