Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

32788764 .. 32790632

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGCGGCTTAACCCACAGAAGTGCATCTTCGGGGTCGAGGTAGGAAAGTTTCTCGGGTACATCATTAGCCACAGGGGAATTGAGGCCAATCCAGAAAAGGTGCAGGCTATATTAGACATGGTGTCCCCAACCTACCGGAACGAGCACGTCGAGATGATAGCCTGGACAGCGGAGCACGAGGCTGCTTTCCTTGGCTTGAAGTCGTACTTGTCGAAGGTACCTCTACTCTACAAACCTGTTCCCGGAGAGATGCTCTACGTATATCTGGCGGCATCGTCAACTGCTGTGAGCTCAGTCCTGATTATGAAGGACTCCGATTGCGAGTACCCAGTGTACTACGCTGGAAAAGGTTACACTGGTGTAGAATCCAGGTACCCGGATATTGAAAGAGTGGCACTGGCTCTCCTGGTATCAGCCTGGAAGCTCAGACATTACTTCCAAGCACACTCAATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGAAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTGGGGGAGTTCGATATCAAGTACCAGCCCCGGACAGCCATCAAAGCATCCAACAAGAAAATCAGCGGAGCCGGCATCCTACTAATTAGCCCGGACGATCAAGTCTACGAGTACGCCCTCAAATTTGCCTTCAAAGCATCCAATAATGCCGCAGAATACGAGGCACTCATAGCAGGTCTGCAAATCGCCCGGGAACTAGGGGTGCAGCACTTTAGTATCTTCAGTGATTCTCAGTTAGTCGTAAACCAGGTCAGCAGTAACTTCAAGGCAAAGGAGCCCCACATGTCCTCCTACCAGGCCTTGGCCCGGGCATTAGTTCAGAGGTTTACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAGGGCAGATGCCCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACCTATGGGGCCACCAAGGTCGAAATACTGGCGGGACCTAGCACTTCTAAGATGGTGTCAGAAATATTTGCGGTGGATCACACAGCTTCATGGATGGACCCAATTTTGAAATACATGGTCGGCGGCCTAGCACCAGATGATAAGGTCGAGGCCAGAAGACTACAGCTAAGGTCAGCTCGATACACAATCATGAATGGGAAACTGTACAGAAGGGGGCATTGCTTTCCCAACCTGAAGTGTTTAACACCGGAGGAAGGTCACAAAATAATGAAGGACATTCACGCTGGTGTATGTGGTAACCATGCCGGAGCCCGATCTCTTGCGCACAAGACCCTAAGGGCAGGACATTTCTGGCCAACCATGTCGGCCCTGGCCCAAAAAATATCCAGTTCTTGCCACAAATGCCAAATGTATGCAAATATCCCAAGGGCACCGCTCATCGCCCTTTCCATTCTCCTTGCACCATGGCCGTTCTGTCAGTGGGGTTTGGACCTGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAATACGCCATTGTTGCCGTGGACTACCAAACAAAGTGGGTGGCGGCAGAACCTCTCGTCGCCATCACCACGGAAAAGGTCAAAAGCTTCATATGGAAGAACATCTCTGCAGGTTTGGAGTCCCGGACACCATCGTCACGGACAATGGTACCCAGTTTGACAATGATGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

549

Amino Acids

61.05

Weight (kDa)

9.35

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	55 - 153	1.7e-17	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	84 - 182	1.5e-16	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	195 - 310	6.2e-21	Reverse transcriptase-like
Integrase_H2C2	PF17921	401 - 454	1.4e-06	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	635, 1609
Acc16I	TGCGCA	1 cut(s)	1272
Acc36I	ACCTGC	4 cut(s)	472, 501, 698, 1577
Acc65I	GGTACC	3 cut(s)	217, 372, 1624
AccB1I	GGYRCC	4 cut(s)	217, 372, 1378, 1624
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccBSI	CCGCTC	1 cut(s)	1384
AccI	GTMKAC	1 cut(s)	639
AclWI	GGATC	1 cut(s)	1032
AcoI	YGGCCR	2 cut(s)	1301, 1415
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	2 cut(s)	739, 1202
AfiI	CCNNNNNNNGG	5 cut(s)	242, 835, 840, 953, 1202
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	7 cut(s)	199, 386, 490, 667, 799, 1057, 1477
AhdI	GACNNNNNGTC	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	7 cut(s)	161, 368, 405, 416, 780, 828, 1317
AleI	CACNNNNGTG	3 cut(s)	19, 1233, 1463
AluBI	AGCT	8 cut(s)	291, 424, 535, 925, 1034, 1114, 1124, 1563
AluI	AGCT	8 cut(s)	291, 424, 535, 925, 1034, 1114, 1124, 1563
Alw21I	GWGCWC	3 cut(s)	147, 177, 293
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	1032
Ama87I	CYCGRG	3 cut(s)	53, 723, 840
ApeKI	GCWGC	2 cut(s)	182, 739
ApoI	RAATTY	1 cut(s)	656
Asp718I	GGTACC	3 cut(s)	217, 372, 1624
AspLEI	GCGC	1 cut(s)	1273
AspS9I	GGNCC	8 cut(s)	525, 838, 957, 983, 1045, 1315, 1321, 1438
AsuC2I	CCSGG	9 cut(s)	243, 377, 565, 626, 724, 725, 841, 842, 1600
AsuHPI	GGTGA	3 cut(s)	445, 461, 1534
AvaI	CYCGRG	3 cut(s)	53, 723, 840
AvaII	GGWCC	3 cut(s)	983, 1045, 1438
AxyI	CCTNAGG	1 cut(s)	1283
BaeGI	GKGCMC	1 cut(s)	1381
BaeI	ACNNNNGTAYC	4 cut(s)	733, 766, 1608, 1641
BalI	TGGCCA	1 cut(s)	1303
BanI	GGYRCC	4 cut(s)	217, 372, 1378, 1624
BanII	GRGCYC	3 cut(s)	293, 813, 1261
BauI	CACGAG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	1111
Bbv12I	GWGCWC	3 cut(s)	147, 177, 293
BbvI	GCAGC	2 cut(s)	169, 751
BccI	CCATC	6 cut(s)	536, 581, 994, 1036, 1547, 1615
BceAI	ACGGC	2 cut(s)	1402, 1478
BciT130I	CCWGG	7 cut(s)	163, 370, 407, 418, 782, 830, 1319
BcnI	CCSGG	9 cut(s)	243, 377, 565, 626, 724, 725, 841, 842, 1600
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	731, 987, 1076
BfmI	CTRYAG	2 cut(s)	1109, 1584
BfuAI	ACCTGC	4 cut(s)	472, 501, 698, 1577
BisI	GCNGC	7 cut(s)	5, 183, 270, 684, 740, 1072, 1521
BlpI	GCTNAGC	1 cut(s)	921
BlsI	GCNGC	7 cut(s)	6, 184, 271, 685, 741, 1073, 1522
Bme18I	GGWCC	3 cut(s)	983, 1045, 1438
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmeT110I	CYCGRG	3 cut(s)	53, 723, 840
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	8 cut(s)	525, 838, 957, 983, 1045, 1315, 1321, 1438
BmrI	ACTGGG	2 cut(s)	323, 1623
BmsI	GCATC	8 cut(s)	33, 240, 281, 590, 618, 680, 901, 938
BmuI	ACTGGG	2 cut(s)	323, 1623
BpiI	GAAGAC	1 cut(s)	1111
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
Bpu10I	CCTNAGC	1 cut(s)	1115
Bpu1102I	GCTNAGC	1 cut(s)	921
BpuMI	CCSGG	9 cut(s)	243, 377, 565, 626, 724, 725, 841, 842, 1600
BsaAI	YACGTR	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	135, 1195
BsaXI	ACNNNNNCTCC	4 cut(s)	387, 417, 806, 836
Bsc4I	CCNNNNNNNGG	5 cut(s)	242, 835, 840, 953, 1202
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	6 cut(s)	329, 361, 402, 981, 1335, 1629
Bse21I	CCTNAGG	1 cut(s)	1283
Bse3DI	GCAATG	1 cut(s)	1165
BseBI	CCWGG	7 cut(s)	163, 370, 407, 418, 782, 830, 1319
BseGI	GGATG	4 cut(s)	581, 609, 671, 1047
BseLI	CCNNNNNNNGG	5 cut(s)	242, 835, 840, 953, 1202
BseMI	GCAATG	1 cut(s)	1165
BseMII	CTCAG	3 cut(s)	306, 439, 779
BseNI	ACTGG	6 cut(s)	329, 361, 402, 981, 1335, 1629
BseSI	GKGCMC	1 cut(s)	1381
BseXI	GCAGC	2 cut(s)	169, 751
BseYI	CCCAGC	1 cut(s)	535
BsgI	GTGCAG	2 cut(s)	122, 758
BshNI	GGYRCC	4 cut(s)	217, 372, 1378, 1624
BsiHKAI	GWGCWC	3 cut(s)	147, 177, 293
BsiHKCI	CYCGRG	3 cut(s)	53, 723, 840
BslFI	GGGAC	4 cut(s)	109, 996, 1482, 1582
BslI	CCNNNNNNNGG	5 cut(s)	242, 835, 840, 953, 1202
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	4 cut(s)	109, 996, 1482, 1582
BsoBI	CYCGRG	3 cut(s)	53, 723, 840
Bsp1286I	GDGCHC	6 cut(s)	147, 177, 293, 813, 1261, 1381
Bsp1407I	TGTACA	1 cut(s)	1152
Bsp143I	GATC	3 cut(s)	631, 1024, 1262
Bsp1720I	GCTNAGC	1 cut(s)	921
Bsp19I	CCATGG	1 cut(s)	1412
BspCNI	CTCAG	3 cut(s)	305, 438, 778
BspHI	TCATGA	1 cut(s)	1137
BspMAI	CTGCAG	1 cut(s)	1588
BspMI	ACCTGC	4 cut(s)	472, 501, 698, 1577
BspPI	GGATC	1 cut(s)	1032
BspT107I	GGYRCC	4 cut(s)	217, 372, 1378, 1624
BsrBI	CCGCTC	1 cut(s)	1384
BsrDI	GCAATG	1 cut(s)	1165
BsrFI	RCCGGY	1 cut(s)	605
BsrGI	TGTACA	1 cut(s)	1152
BsrI	ACTGG	6 cut(s)	329, 361, 402, 981, 1335, 1629
BssAI	RCCGGY	1 cut(s)	605
BssMI	GATC	3 cut(s)	631, 1024, 1262
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	5 cut(s)	190, 834, 963, 1373, 1412
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	7 cut(s)	163, 370, 407, 418, 782, 830, 1319
Bst4CI	ACNGT	3 cut(s)	457, 1152, 1473
BstAUI	TGTACA	1 cut(s)	1152
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	105, 607, 927
BstDEI	CTNAG	7 cut(s)	292, 425, 765, 921, 996, 1115, 1283
BstDSI	CCRYGG	3 cut(s)	1412, 1494, 1545
BstEII	GGTNACC	1 cut(s)	1244
BstF5I	GGATG	4 cut(s)	581, 609, 671, 1047
BstHHI	GCGC	1 cut(s)	1273
BstKTI	GATC	3 cut(s)	634, 1027, 1265
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	631, 1024, 1262
BstMWI	GCNNNNNNNGC	8 cut(s)	167, 578, 606, 668, 704, 926, 1350, 1490
BstNI	CCWGG	7 cut(s)	163, 370, 407, 418, 782, 830, 1319
BstNSI	RCATGY	1 cut(s)	820
BstPI	GGTNACC	1 cut(s)	1244
BstSFI	CTRYAG	2 cut(s)	1109, 1584
BstSLI	GKGCMC	1 cut(s)	1381
BstSNI	TACGTA	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	169, 751
BstV2I	GAAGAC	1 cut(s)	1111
BstXI	CCANNNNNNTGG	2 cut(s)	535, 1465
Bsu36I	CCTNAGG	1 cut(s)	1283
BtgI	CCRYGG	3 cut(s)	1412, 1494, 1545
BtgZI	GCGATG	1 cut(s)	1372
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	4 cut(s)	581, 609, 671, 1047
BtsI	GCAGTG	1 cut(s)	1470
BtsIMutI	CAGTG	6 cut(s)	336, 354, 395, 763, 1433, 1470
BveI	ACCTGC	4 cut(s)	472, 501, 698, 1577
Cac8I	GCNNGC	3 cut(s)	105, 607, 927
CciI	TCATGA	1 cut(s)	1137
CfoI	GCGC	1 cut(s)	1273
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	8 cut(s)	525, 838, 957, 983, 1045, 1315, 1321, 1438
Cfr9I	CCCGGG	2 cut(s)	723, 840
CsiI	ACCWGGT	1 cut(s)	780
CspCI	CAANNNNNGTGG	4 cut(s)	1493, 1497, 1528, 1532
CviAII	CATG	8 cut(s)	118, 817, 1038, 1063, 1138, 1250, 1309, 1413
DdeI	CTNAG	7 cut(s)	292, 425, 765, 921, 996, 1115, 1283
DpnI	GATC	3 cut(s)	633, 1026, 1264
DpnII	GATC	3 cut(s)	631, 1024, 1262
DrdI	GACNNNNNNGTC	2 cut(s)	635, 1609
DriI	GACNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	2 cut(s)	635, 1609
EaeI	YGGCCR	2 cut(s)	1301, 1415
Eam1105I	GACNNNNNGTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	291
Eco105I	TACGTA	1 cut(s)	259
Eco130I	CCWWGG	5 cut(s)	190, 834, 963, 1373, 1412
Eco147I	AGGCCT	1 cut(s)	833
Eco24I	GRGCYC	3 cut(s)	293, 813, 1261
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	3 cut(s)	983, 1045, 1438
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	2 cut(s)	739, 1202
Eco81I	CCTNAGG	1 cut(s)	1283
Eco88I	CYCGRG	3 cut(s)	53, 723, 840
Eco91I	GGTNACC	1 cut(s)	1244
EcoICRI	GAGCTC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	983
EcoO65I	GGTNACC	1 cut(s)	1244
EcoRII	CCWGG	7 cut(s)	161, 368, 405, 416, 780, 828, 1317
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	5 cut(s)	190, 834, 963, 1373, 1412
EcoT38I	GRGCYC	3 cut(s)	293, 813, 1261
ErhI	CCWWGG	5 cut(s)	190, 834, 963, 1373, 1412
FaeI	CATG	8 cut(s)	121, 820, 1041, 1066, 1141, 1253, 1312, 1416
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 191, 223
FaqI	GGGAC	4 cut(s)	109, 996, 1482, 1582
FatI	CATG	8 cut(s)	117, 816, 1037, 1062, 1137, 1249, 1308, 1412
FauI	CCCGC	1 cut(s)	973
FauNDI	CATATG	1 cut(s)	1568
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	7 cut(s)	5, 183, 270, 684, 740, 1072, 1521
FokI	GGATG	4 cut(s)	568, 596, 658, 1054
FriOI	GRGCYC	3 cut(s)	293, 813, 1261
Fsp4HI	GCNGC	7 cut(s)	5, 183, 270, 684, 740, 1072, 1521
FspBI	CTAG	3 cut(s)	731, 987, 1076
FspI	TGCGCA	1 cut(s)	1272
GlaI	GCGC	1 cut(s)	1272
GluI	GCNGC	7 cut(s)	5, 183, 270, 684, 740, 1072, 1521
GsaI	CCCAGC	1 cut(s)	539
HhaI	GCGC	1 cut(s)	1273
Hin1II	CATG	8 cut(s)	121, 820, 1041, 1066, 1141, 1253, 1312, 1416
Hin6I	GCGC	1 cut(s)	1271
HinP1I	GCGC	1 cut(s)	1271
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	1561
HinfI	GANTC	4 cut(s)	311, 365, 761, 1595
HphI	GGTGA	3 cut(s)	445, 461, 1534
Hpy166II	GTNNAC	7 cut(s)	279, 334, 640, 778, 861, 1451, 1498
Hpy188I	TCNGA	4 cut(s)	316, 428, 855, 1009
Hpy188III	TCNNGA	4 cut(s)	92, 151, 298, 1138
Hpy8I	GTNNAC	7 cut(s)	279, 334, 640, 778, 861, 1451, 1498
Hpy99I	CGWCG	2 cut(s)	152, 1538
HpyAV	CCTTC	6 cut(s)	208, 301, 673, 1152, 1196, 1213
HpyCH4III	ACNGT	3 cut(s)	457, 1152, 1473
HpyCH4IV	ACGT	2 cut(s)	147, 258
HpyCH4V	TGCA	7 cut(s)	24, 103, 715, 739, 1364, 1409, 1586
HpyF10VI	GCNNNNNNNGC	8 cut(s)	167, 578, 606, 668, 704, 926, 1350, 1490
HpyF3I	CTNAG	7 cut(s)	292, 425, 765, 921, 996, 1115, 1283
HpySE526I	ACGT	2 cut(s)	147, 258
Hsp92II	CATG	8 cut(s)	121, 820, 1041, 1066, 1141, 1253, 1312, 1416
HspAI	GCGC	1 cut(s)	1271
KpnI	GGTACC	3 cut(s)	221, 376, 1628
KroI	GCCGGC	1 cut(s)	605
KroNI	GCCGGC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	631, 1024, 1262
LmnI	GCTCC	4 cut(s)	172, 602, 808, 1256
Lsp1109I	GCAGC	2 cut(s)	169, 751
LweI	GCATC	8 cut(s)	33, 240, 281, 590, 618, 680, 901, 938
MabI	ACCWGGT	1 cut(s)	780
MaeI	CTAG	3 cut(s)	731, 987, 1076
MaeII	ACGT	2 cut(s)	147, 258
MaeIII	GTNAC	5 cut(s)	350, 791, 1205, 1244, 1611
MalI	GATC	3 cut(s)	633, 1026, 1264
MbiI	CCGCTC	1 cut(s)	1384
MboI	GATC	3 cut(s)	631, 1024, 1262
MboII	GAAGA	5 cut(s)	19, 502, 745, 1116, 1585
MhlI	GDGCHC	6 cut(s)	147, 177, 293, 813, 1261, 1381
MlsI	TGGCCA	1 cut(s)	1303
MluCI	AATT	5 cut(s)	78, 516, 618, 656, 1050
MluNI	TGGCCA	1 cut(s)	1303
MlyI	GAGTC	2 cut(s)	305, 1604
MmeI	TCCRAC	1 cut(s)	609
Mox20I	TGGCCA	1 cut(s)	1303
MroNI	GCCGGC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	1303
MseI	TTAA	4 cut(s)	9, 515, 519, 1190
MslI	CAYNNNNRTG	4 cut(s)	19, 1136, 1233, 1463
Msp20I	TGGCCA	1 cut(s)	1303
MspA1I	CMGCKG	2 cut(s)	170, 600
MvaI	CCWGG	7 cut(s)	163, 370, 407, 418, 782, 830, 1319
MwoI	GCNNNNNNNGC	8 cut(s)	167, 578, 606, 668, 704, 926, 1350, 1490
NaeI	GCCGGC	1 cut(s)	607
NciI	CCSGG	9 cut(s)	243, 377, 565, 626, 724, 725, 841, 842, 1600
NcoI	CCATGG	1 cut(s)	1412
NdeI	CATATG	1 cut(s)	1568
NdeII	GATC	3 cut(s)	631, 1024, 1262
NgoMIV	GCCGGC	1 cut(s)	605
NlaIII	CATG	8 cut(s)	121, 820, 1041, 1066, 1141, 1253, 1312, 1416
NmuCI	GTSAC	2 cut(s)	1205, 1611
NsbI	TGCGCA	1 cut(s)	1272
NspI	RCATGY	1 cut(s)	820
OliI	CACNNNNGTG	3 cut(s)	19, 1233, 1463
PacI	TTAATTAA	1 cut(s)	519
PagI	TCATGA	1 cut(s)	1137
PceI	AGGCCT	1 cut(s)	833
PciI	ACATGT	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 209
PdiI	GCCGGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	365, 761
PflMI	CCANNNNNTGG	1 cut(s)	835
PfoI	TCCNGGA	2 cut(s)	241, 1598
PkrI	GCNGC	7 cut(s)	6, 184, 271, 685, 741, 1073, 1522
PleI	GAGTC	2 cut(s)	305, 1603
PpsI	GAGTC	2 cut(s)	305, 1603
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	983
PscI	ACATGT	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	983
Psp6I	CCWGG	7 cut(s)	161, 368, 405, 416, 780, 828, 1317
PspEI	GGTNACC	1 cut(s)	1244
PspFI	CCCAGC	1 cut(s)	535
PspGI	CCWGG	7 cut(s)	161, 368, 405, 416, 780, 828, 1317
PspPI	GGNCC	8 cut(s)	525, 838, 957, 983, 1045, 1315, 1321, 1438
PspPPI	RGGWCCY	1 cut(s)	983
PstI	CTGCAG	1 cut(s)	1588
RseI	CAYNNNNRTG	4 cut(s)	19, 1136, 1233, 1463
SacI	GAGCTC	1 cut(s)	293
SaqAI	TTAA	4 cut(s)	9, 515, 519, 1190
SatI	GCNGC	7 cut(s)	5, 183, 270, 684, 740, 1072, 1521
Sau3AI	GATC	3 cut(s)	631, 1024, 1262
Sau96I	GGNCC	8 cut(s)	525, 838, 957, 983, 1045, 1315, 1321, 1438
SchI	GAGTC	2 cut(s)	305, 1604
SduI	GDGCHC	6 cut(s)	147, 177, 293, 813, 1261, 1381
SexAI	ACCWGGT	1 cut(s)	780
SfaNI	GCATC	8 cut(s)	33, 240, 281, 590, 618, 680, 901, 938
SfcI	CTRYAG	2 cut(s)	1109, 1584
SinI	GGWCC	3 cut(s)	983, 1045, 1438
SmaI	CCCGGG	2 cut(s)	725, 842
SmiMI	CAYNNNNRTG	4 cut(s)	19, 1136, 1233, 1463
SnaBI	TACGTA	1 cut(s)	259
SrfI	GCCCGGGC	1 cut(s)	842
Sse9I	AATT	5 cut(s)	78, 516, 618, 656, 1050
SseBI	AGGCCT	1 cut(s)	833
SspI	AATATT	1 cut(s)	1014
SspMI	CTAG	3 cut(s)	731, 987, 1076
SstI	GAGCTC	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	833
StyI	CCWWGG	5 cut(s)	190, 834, 963, 1373, 1412
TaaI	ACNGT	3 cut(s)	457, 1152, 1473
TaiI	ACGT	2 cut(s)	150, 261
TaqI	TCGA	8 cut(s)	36, 150, 212, 531, 546, 969, 1095, 1126
TasI	AATT	5 cut(s)	78, 516, 618, 656, 1050
TatI	WGTACW	2 cut(s)	333, 1152
TauI	GCSGC	5 cut(s)	7, 272, 686, 1074, 1523
TfiI	GAWTC	2 cut(s)	365, 761
Tru1I	TTAA	4 cut(s)	9, 515, 519, 1190
Tru9I	TTAA	4 cut(s)	9, 515, 519, 1190
TscAI	CASTG	6 cut(s)	336, 361, 402, 763, 1433, 1470
TseFI	GTSAC	2 cut(s)	1205, 1611
TseI	GCWGC	2 cut(s)	182, 739
Tsp45I	GTSAC	2 cut(s)	1205, 1611
TspDTI	ATGAA	5 cut(s)	320, 1026, 1154, 1232, 1555
TspGWI	ACGGA	2 cut(s)	1562, 1630
TspMI	CCCGGG	2 cut(s)	723, 840
TspRI	CASTG	6 cut(s)	336, 361, 402, 763, 1433, 1470
Van91I	CCANNNNNTGG	1 cut(s)	835
VpaK11BI	GGWCC	3 cut(s)	983, 1045, 1438
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1315, 1492
XmaI	CCCGGG	2 cut(s)	723, 840
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	3 cut(s)	731, 987, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.