Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000677.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

218165 .. 225527

Gene Structure 7363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000677.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgaacgccaaagctgactcactggtaaggctagccaccgcccaaccacaccaaagtccaacggacataagggtggagtgccttcacaagccaagcatcaacaaaaccctggcggaaatcatttacattgaggtcaatcccagctggatggatgaaatcatagagtataagggcaatggaacactacctactgacaaggtcgaagcaaggcagcttaagctgagggcaaccagatataacatccagaatggcaaactttaccaccaagggttcacccatcccaacctccggtgtctgaccccagaagagggaaaggcagtactggcaatgatacacactagggaatgtggaaaccactcgggcgccagcttggacattgggctacgacatgcatgtcgcagttgggtcccaccatggcttgtgggtcctccaaagagggtgttacatatgcttggtgacatagcaaatcctccacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

159

Amino Acids

17.83

Weight (kDa)

8.96

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	362
AciI	CCGC	2 cut(s)	39, 113
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	288, 307, 308
AflII	CTTAAG	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	5 cut(s)	14, 144, 214, 220, 369
AluI	AGCT	5 cut(s)	14, 144, 214, 220, 369
Ama87I	CYCGRG	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	406, 425
AsuHPI	GGTGA	2 cut(s)	265, 467
AsuNHI	GCTAGC	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	406, 425
BanI	GGYRCC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	2 cut(s)	142, 285
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	2 cut(s)	32, 339
BfoI	RGCGCY	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	406, 425
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	406, 425
BmiI	GGNNCC	4 cut(s)	364, 407, 408, 426
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	105
BmtI	GCTAGC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	108, 265, 413
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 307, 308
Bse1I	ACTGG	2 cut(s)	27, 327
Bse3DI	GCAATG	2 cut(s)	181, 333
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	108, 265, 413
BseGI	GGATG	4 cut(s)	153, 157, 240, 277
BseLI	CCNNNNNNNGG	3 cut(s)	288, 307, 308
BseMI	GCAATG	2 cut(s)	181, 333
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	27, 327
BseXI	GCAGC	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	288, 307, 308
BsmFI	GGGAC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	2 cut(s)	39, 113
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	4 cut(s)	364, 407, 408, 426
BspOI	GCTAGC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	362
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	2 cut(s)	181, 333
BsrI	ACTGG	2 cut(s)	27, 327
BssECI	CCNNGG	3 cut(s)	108, 265, 413
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	265, 413
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	363
BstAFI	CTTAAG	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	33, 367
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	4 cut(s)	153, 157, 240, 277
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 323
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	392, 396
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	4 cut(s)	153, 157, 240, 277
BtsIMutI	CAGTG	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	33, 367
CfoI	GCGC	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	406, 425
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	3 cut(s)	389, 393, 414
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	1 cut(s)	221
DinI	GGCGCC	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	2 cut(s)	265, 413
Eco47I	GGWCC	2 cut(s)	406, 425
Eco88I	CYCGRG	1 cut(s)	358
EcoO109I	RGGNCCY	2 cut(s)	406, 425
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	265, 413
EcoT22I	ATGCAT	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	364
EheI	GGCGCC	1 cut(s)	364
ErhI	CCWWGG	2 cut(s)	265, 413
FaeI	CATG	3 cut(s)	392, 396, 417
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	388, 392, 413
FauNDI	CATATG	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	4 cut(s)	160, 164, 227, 264
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	2 cut(s)	32, 339
GlaI	GCGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	212
GsaI	CCCAGC	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	366
HapII	CCGG	1 cut(s)	289
HhaI	GCGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	392, 396, 417
Hin6I	GCGC	1 cut(s)	363
HinP1I	GCGC	1 cut(s)	363
HinfI	GANTC	1 cut(s)	17
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	2 cut(s)	265, 467
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 323
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	392, 396, 417
HspAI	GCGC	1 cut(s)	363
KasI	GGCGCC	1 cut(s)	362
KflI	GGGWCCC	1 cut(s)	406
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	32, 339
MaeIII	GTNAC	2 cut(s)	441, 455
MboII	GAAGA	1 cut(s)	317
Mly113I	GGCGCC	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	7 cut(s)	124, 216, 296, 301, 429, 438, 480
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	144
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	217, 323
NarI	GGCGCC	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	413
NdeI	CATATG	1 cut(s)	447
NheI	GCTAGC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	392, 396, 417
NlaIV	GGNNCC	4 cut(s)	364, 407, 408, 426
NmuCI	GTSAC	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	2 cut(s)	392, 396
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	1 cut(s)	11
PluTI	GGCGCC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	11
PpuMI	RGGWCCY	2 cut(s)	406, 425
Psp5II	RGGWCCY	2 cut(s)	406, 425
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	364, 407, 408, 426
PspPI	GGNCC	2 cut(s)	406, 425
PspPPI	RGGWCCY	2 cut(s)	406, 425
PsrI	GAACNNNNNNTAC	2 cut(s)	172, 204
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	406, 425
ScaI	AGTACT	1 cut(s)	321
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	9 cut(s)	16, 135, 146, 190, 201, 216, 222, 288, 371
SfaNI	GCATC	1 cut(s)	105
SfoI	GGCGCC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	406, 425
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SsiI	CCGC	2 cut(s)	39, 113
SspDI	GGCGCC	1 cut(s)	362
SspMI	CTAG	2 cut(s)	32, 339
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	265, 413
TaqI	TCGA	1 cut(s)	201
TatI	WGTACW	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	2 cut(s)	17, 168
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	406, 425
XceI	RCATGY	2 cut(s)	392, 396
XspI	CTAG	2 cut(s)	32, 339
ZrmI	AGTACT	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.