Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

1463348 .. 1464973

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATGGTAAAGCGTACGAGAAGAGGTCATTACTTCCCAACCTCAAGTGCGTAACACCCGAGGACGACCACAAAATAATGAAGGACATACACGCCGGTGTATGCGACAACCATGCGGGCCCGTCTCTTGCACAAGACCCTAAGGGTCGGATATTTCGGCCAACCATGTCGGCCCTAGCTCAAACAATATCAAGCTCTTGCCACAAGTGCCAAATGTATGCGAATATTCTAAGGGCACCACCTATTGCCCTCTCCATCCTTCTCGCACCTTGGGCCTTCTCGCTAATGGGGCCGGACACGATCGGTAAGCTTCCTACGGCGGTGGGACAATTCAAGCAAAGGAATTTAACAAAGGACTACCCTAAATACGGCTCGAGGCCATTGTTCAAAAAATGGGTAAACAAAATAAAGGCCCGGAGGGTAAACCTCCTAATCTTGAGCGTTAGCTCGGCTATCGATTGCACCTCCCTCGGGTCTAGCCTCGTTCTCTCTCTTTCGCCTCCTATTCCTTCTTCCTTTTCTCAAGCAATCCTCGCCGAATTTGGCTTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

184

Amino Acids

20.08

Weight (kDa)

9.65

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AciI	CCGC	2 cut(s)	116, 320
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	343, 539
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	368, 471
AgsI	TTSAA	2 cut(s)	334, 388
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	179, 195, 310, 447
AluI	AGCT	4 cut(s)	179, 195, 310, 447
Alw26I	GTCTC	1 cut(s)	129
Ama87I	CYCGRG	3 cut(s)	59, 373, 470
AoxI	GGCC	7 cut(s)	118, 158, 171, 273, 290, 377, 411
ApaI	GGGCCC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	343, 539
AspS9I	GGNCC	6 cut(s)	118, 119, 172, 273, 290, 412
AsuC2I	CCSGG	1 cut(s)	415
AvaI	CYCGRG	3 cut(s)	59, 373, 470
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	2 cut(s)	122, 238
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	122
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	333, 385
BcgI	CGANNNNNNTGC	4 cut(s)	95, 129, 451, 485
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	176, 477
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	3 cut(s)	59, 373, 470
BmgT120I	GGNCC	6 cut(s)	118, 119, 172, 273, 290, 412
BmiI	GGNNCC	3 cut(s)	120, 237, 291
BmrFI	CCNGG	1 cut(s)	415
BpuEI	CTTGAG	3 cut(s)	29, 457, 507
BpuMI	CCSGG	1 cut(s)	415
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	3 cut(s)	60, 269, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 471
Bse118I	RCCGGY	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	3 cut(s)	60, 269, 469
BseGI	GGATG	2 cut(s)	10, 255
BseLI	CCNNNNNNNGG	2 cut(s)	368, 471
BseSI	GKGCMC	2 cut(s)	122, 238
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	7 cut(s)	120, 160, 173, 275, 292, 379, 413
BshNI	GGYRCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	303
BsiHKCI	CYCGRG	3 cut(s)	59, 373, 470
BsiSI	CCGG	3 cut(s)	96, 293, 415
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	368, 471
BsmAI	GTCTC	1 cut(s)	129
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	7 cut(s)	120, 160, 173, 275, 292, 379, 413
BsoBI	CYCGRG	3 cut(s)	59, 373, 470
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	122, 238
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	2 cut(s)	116, 320
BspANI	GGCC	7 cut(s)	120, 160, 173, 275, 292, 379, 413
BspDI	ATCGAT	1 cut(s)	456
BspLI	GGNNCC	3 cut(s)	120, 237, 291
BspT107I	GGYRCC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	60, 269, 469
BssMI	GATC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	141, 230
BstF5I	GGATG	2 cut(s)	10, 255
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	300
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 272, 289, 533
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	2 cut(s)	122, 238
Bsu15I	ATCGAT	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	7 cut(s)	120, 160, 173, 275, 292, 379, 413
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	2 cut(s)	10, 255
Cac8I	GCNNGC	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	6 cut(s)	118, 119, 172, 273, 290, 412
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	113, 166
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	141, 230
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	3 cut(s)	59, 373, 470
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	2 cut(s)	116, 169
FaiI	YATR	5 cut(s)	89, 103, 114, 167, 219
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	112, 165
FauI	CCCGC	1 cut(s)	109
FokI	GGATG	2 cut(s)	17, 242
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	2 cut(s)	176, 477
HaeIII	GGCC	7 cut(s)	120, 160, 173, 275, 292, 379, 413
HapII	CCGG	3 cut(s)	96, 293, 415
Hin1II	CATG	2 cut(s)	116, 169
HindIII	AAGCTT	1 cut(s)	308
HpaII	CCGG	3 cut(s)	96, 293, 415
Hpy166II	GTNNAC	2 cut(s)	400, 424
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	2 cut(s)	400, 424
HpyAV	CCTTC	4 cut(s)	76, 269, 286, 519
HpyCH4V	TGCA	2 cut(s)	131, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 272, 289, 533
HpyF3I	CTNAG	2 cut(s)	141, 230
Hsp92II	CATG	2 cut(s)	116, 169
Kzo9I	GATC	1 cut(s)	300
LpnPI	CCDG	3 cut(s)	109, 306, 428
MaeI	CTAG	2 cut(s)	176, 477
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	2 cut(s)	34, 504
MhlI	GDGCHC	2 cut(s)	122, 238
MluCI	AATT	3 cut(s)	329, 343, 539
MmeI	TCCRAC	1 cut(s)	128
MseI	TTAA	2 cut(s)	347, 548
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	3 cut(s)	96, 293, 415
MspR9I	CCNGG	1 cut(s)	415
MwoI	GCNNNNNNNGC	4 cut(s)	207, 272, 289, 533
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	2 cut(s)	116, 169
NlaIV	GGNNCC	3 cut(s)	120, 237, 291
NmeAIII	GCCGAG	1 cut(s)	428
OliI	CACNNNNGTG	1 cut(s)	96
PaeR7I	CTCGAG	1 cut(s)	373
Pfl23II	CGTACG	1 cut(s)	15
Ple19I	CGATCG	1 cut(s)	303
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	120, 237, 291
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	6 cut(s)	118, 119, 172, 273, 290, 412
PspXI	VCTCGAGB	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	347, 548
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	6 cut(s)	118, 119, 172, 273, 290, 412
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	2 cut(s)	122, 238
Sfr274I	CTCGAG	1 cut(s)	373
SgrAI	CRCCGGYG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	4 cut(s)	44, 373, 436, 522
SmoI	CTYRAG	4 cut(s)	44, 373, 436, 522
Sse9I	AATT	3 cut(s)	329, 343, 539
SsiI	CCGC	2 cut(s)	116, 320
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	2 cut(s)	176, 477
StyD4I	CCNGG	1 cut(s)	413
StyI	CCWWGG	1 cut(s)	269
TaqI	TCGA	2 cut(s)	374, 456
TasI	AATT	3 cut(s)	329, 343, 539
Tru1I	TTAA	2 cut(s)	347, 548
Tru9I	TTAA	2 cut(s)	347, 548
TspDTI	ATGAA	1 cut(s)	95
XapI	RAATTY	2 cut(s)	343, 539
XhoI	CTCGAG	1 cut(s)	373
XspI	CTAG	2 cut(s)	176, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.