Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

16984150 .. 16984949

Gene Structure 800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25502.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAGGAAACACTGAAAACACAATTCGCCCACCAAGAGATATGGTTCAACCGCCAAAAGGAGAGACATACATTGTACATTGACGAATCCTCCAACCAAGCTGGAAGTGGGGCAAGCCTAGTACTTACAACTCCACAAAATGATGAGCTCGAGTACGCCCTTCGATTCAATTTCAAGGCCTGCAACAATGAAGTGAAATACGAGGCACTCATCGCTGGCCTTCGCATTGCAAAAGAGCTAGAATCAACAAAAGTTCAAGTTCATAGCGATTTCCAACTTGTGGTGAATCAAGTATTAGAGGAATACCAAGCAAAAGACCCTGTCATGGCAGCCTACTTGAGTAAGGTGAAATCCTTGTTATCATGTTTCACATCATACGACATCGTTCAGATTCCAAGAGAACAGAACGAACGGGCAGACGCTTTAGCTCGGCTAGCATCAGCCATCGATCGCAATATGGGAAAGAATACTCTAATCAAGTACCTAAACAAGCCAAGAAAGTTGCCTGACGACCCCTTTGAGGCAATGAAGGTCAAGTATCGAGCAGGCCGCTACTTAATTGTTAACGGGACTTTTTACAAGCGAGGGTACTCCGCTCCCTACGTACGATGTGTGAACCTCAATGAAGGAAGAAATGTGTTGTCAAACATCCACGAAGGAATCAGCGGAATCTTTAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

228

Amino Acids

25.94

Weight (kDa)

8.98

Isoelectric Point (pI)

23.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	36 - 145	3.3e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	596
AciI	CCGC	4 cut(s)	52, 550, 594, 666
AfaI	GTAC	6 cut(s)	77, 123, 155, 482, 590, 606
AfiI	CCNNNNNNNGG	4 cut(s)	58, 280, 325, 520
AgsI	TTSAA	4 cut(s)	49, 169, 175, 257
AluBI	AGCT	5 cut(s)	101, 148, 238, 428, 678
AluI	AGCT	5 cut(s)	101, 148, 238, 428, 678
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	177, 217, 547
ApeKI	GCWGC	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AsuHPI	GGTGA	2 cut(s)	295, 358
AsuNHI	GCTAGC	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	3 cut(s)	119, 239, 434
BisI	GCNGC	2 cut(s)	330, 550
BlsI	GCNGC	2 cut(s)	331, 551
BmcAI	AGTACT	1 cut(s)	123
BmeT110I	CYCGRG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	446
BmtI	GCTAGC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	447
BsaAI	YACGTR	1 cut(s)	604
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 280, 325, 520
Bse3DI	GCAATG	2 cut(s)	225, 531
BseCI	ATCGAT	1 cut(s)	447
BseGI	GGATG	1 cut(s)	648
BseLI	CCNNNNNNNGG	4 cut(s)	58, 280, 325, 520
BseMI	GCAATG	2 cut(s)	225, 531
BseXI	GCAGC	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	179, 219, 549
BshVI	ATCGAT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	149
BsiWI	CGTACG	1 cut(s)	604
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	4 cut(s)	58, 280, 325, 520
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	179, 219, 549
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	4 cut(s)	52, 550, 594, 666
BspANI	GGCC	3 cut(s)	179, 219, 549
BspDI	ATCGAT	1 cut(s)	447
BspOI	GCTAGC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	596
BsrDI	GCAATG	2 cut(s)	225, 531
BsrGI	TGTACA	1 cut(s)	75
BssMI	GATC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	5 cut(s)	115, 181, 217, 435, 547
BstF5I	GGATG	1 cut(s)	648
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	448
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 434
BstSNI	TACGTA	1 cut(s)	604
BstV1I	GCAGC	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	179, 219, 549
BsuTUI	ATCGAT	1 cut(s)	447
BtgZI	GCGATG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	5 cut(s)	115, 181, 217, 435, 547
ClaI	ATCGAT	1 cut(s)	447
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	6 cut(s)	76, 122, 154, 481, 589, 605
CviAII	CATG	2 cut(s)	325, 363
CviQI	GTAC	6 cut(s)	76, 122, 154, 481, 589, 605
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	148
Eco105I	TACGTA	1 cut(s)	604
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	2 cut(s)	328, 366
FaiI	YATR	7 cut(s)	43, 69, 264, 326, 364, 376, 458
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	2 cut(s)	324, 362
Fnu4HI	GCNGC	2 cut(s)	330, 550
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	330, 550
FspBI	CTAG	3 cut(s)	119, 239, 434
GluI	GCNGC	2 cut(s)	330, 550
HaeIII	GGCC	3 cut(s)	179, 219, 549
HgaI	GACGC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	328, 366
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	7 cut(s)	86, 165, 242, 286, 391, 660, 669
HpaI	GTTAAC	1 cut(s)	565
HphI	GGTGA	2 cut(s)	295, 358
Hpy166II	GTNNAC	2 cut(s)	565, 616
Hpy188I	TCNGA	1 cut(s)	390
Hpy8I	GTNNAC	2 cut(s)	565, 616
HpyAV	CCTTC	5 cut(s)	170, 230, 523, 620, 650
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	2 cut(s)	183, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 434
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	2 cut(s)	328, 366
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	601
LpnPI	CCDG	6 cut(s)	87, 193, 201, 333, 519, 531
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	3 cut(s)	119, 239, 434
MaeII	ACGT	1 cut(s)	603
MalI	GATC	1 cut(s)	450
MbiI	CCGCTC	1 cut(s)	596
MboI	GATC	1 cut(s)	448
MboII	GAAGA	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	3 cut(s)	23, 169, 558
MmeI	TCCRAC	2 cut(s)	117, 298
MnlI	CCTC	6 cut(s)	100, 196, 292, 514, 578, 629
MseI	TTAA	3 cut(s)	557, 564, 682
MspA1I	CMGCKG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	212, 434
NdeII	GATC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	328, 366
NmeAIII	GCCGAG	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	179
PfeI	GAWTC	7 cut(s)	86, 165, 242, 286, 391, 660, 669
Pfl23II	CGTACG	1 cut(s)	604
PflFI	GACNNNGTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	331, 551
Ple19I	CGATCG	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	150
PspLI	CGTACG	1 cut(s)	604
PspXI	VCTCGAGB	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	320
PvuI	CGATCG	1 cut(s)	451
RsaI	GTAC	6 cut(s)	77, 123, 155, 482, 590, 606
RsaNI	GTAC	6 cut(s)	76, 122, 154, 481, 589, 605
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	557, 564, 682
SatI	GCNGC	2 cut(s)	330, 550
Sau3AI	GATC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	446
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	149, 337
SmoI	CTYRAG	2 cut(s)	149, 337
SnaBI	TACGTA	1 cut(s)	604
Sse9I	AATT	3 cut(s)	23, 169, 558
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	4 cut(s)	52, 550, 594, 666
SspMI	CTAG	3 cut(s)	119, 239, 434
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	150, 163, 447, 541
TasI	AATT	3 cut(s)	23, 169, 558
TatI	WGTACW	2 cut(s)	75, 121
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	7 cut(s)	86, 165, 242, 286, 391, 660, 669
Tru1I	TTAA	3 cut(s)	557, 564, 682
Tru9I	TTAA	3 cut(s)	557, 564, 682
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	5 cut(s)	17, 204, 251, 542, 639
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	320
Van91I	CCANNNNNTGG	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XhoI	CTCGAG	1 cut(s)	149
XspI	CTAG	3 cut(s)	119, 239, 434
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.