Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8515379.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

386 .. 1719

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8515379.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggaaagtgaacaattcaaagtctgccaactagcaccagttgttgccaacattgaccccatgcgccgtatcaacatgattgatggtgacgctcctatcaacatgtcacacagagaaaagaacaccaaggttagttctctggccaggctagcaactgctcaacctcatcaaagtctagtggacacaagggtggaatgtctcgataacccgagtatcaccataaccttggttgaaaatttcgagcttaacctcatttggatggatgagatattagagtacaaacgcagtggcacagtgccagtcgacaaggtagaagctcgccagctcattcggagggcaacccactacaacatccaaaatggcaagttatactgccagggattcactcacccaaatctgagatgtttaacagtagaagaaggcaaggcgttgttagcaagaatccatgcaggggaatgcagtaaccattcagacgccatatcactggcaaaccacactatgcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

168

Amino Acids

18.99

Weight (kDa)

6.65

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	235
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	19, 233
AjnI	CCWGG	2 cut(s)	143, 375
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	3 cut(s)	244, 317, 325
AluI	AGCT	3 cut(s)	244, 317, 325
Alw26I	GTCTC	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	66, 504
AsuHPI	GGTGA	3 cut(s)	98, 208, 380
AsuNHI	GCTAGC	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	208
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BalI	TGGCCA	1 cut(s)	143
BccI	CCATC	2 cut(s)	77, 253
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	2 cut(s)	145, 377
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	4 cut(s)	32, 149, 176, 505
Bme1390I	CCNGG	2 cut(s)	145, 377
BmeT110I	CYCGRG	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	145, 377
BmtI	GCTAGC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	126, 225, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	38, 299, 489
BseBI	CCWGG	2 cut(s)	145, 377
BseDI	CCNNGG	3 cut(s)	126, 225, 376
BseGI	GGATG	3 cut(s)	264, 268, 351
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	38, 299, 489
BshFI	GGCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	208
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	390
BspOI	GCTAGC	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	38, 299, 489
BssECI	CCNNGG	3 cut(s)	126, 225, 376
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	126, 225
Bst2UI	CCWGG	2 cut(s)	145, 377
Bst4CI	ACNGT	2 cut(s)	295, 412
BstACI	GRCGYC	1 cut(s)	474
BstC8I	GCNNGC	3 cut(s)	150, 319, 323
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	3 cut(s)	264, 268, 351
BstHHI	GCGC	2 cut(s)	66, 504
BstMAI	GTCTC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 434
BstNI	CCWGG	2 cut(s)	145, 377
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	143, 375
BstXI	CCANNNNNNTGG	2 cut(s)	226, 484
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	3 cut(s)	264, 268, 351
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	3 cut(s)	292, 300, 482
Cac8I	GCNNGC	3 cut(s)	150, 319, 323
CfoI	GCGC	2 cut(s)	66, 504
CseI	GACGC	2 cut(s)	98, 482
Csp6I	GTAC	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	4 cut(s)	61, 76, 103, 446
CviJI	RGCY	5 cut(s)	143, 148, 244, 317, 325
CviKI_1	RGCY	5 cut(s)	143, 148, 244, 317, 325
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	126, 225
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	143, 375
EcoT14I	CCWWGG	2 cut(s)	126, 225
ErhI	CCWWGG	2 cut(s)	126, 225
FaeI	CATG	4 cut(s)	64, 79, 106, 449
FaiI	YATR	8 cut(s)	62, 77, 104, 221, 370, 447, 479, 500
FatI	CATG	4 cut(s)	60, 75, 102, 445
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	3 cut(s)	271, 275, 338
FspBI	CTAG	4 cut(s)	32, 149, 176, 505
GlaI	GCGC	2 cut(s)	65, 503
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	2 cut(s)	98, 482
HhaI	GCGC	2 cut(s)	66, 504
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	64, 79, 106, 449
Hin6I	GCGC	2 cut(s)	64, 502
HinP1I	GCGC	2 cut(s)	64, 502
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	381, 441
HphI	GGTGA	3 cut(s)	98, 208, 380
Hpy166II	GTNNAC	3 cut(s)	11, 181, 304
Hpy188I	TCNGA	3 cut(s)	333, 399, 472
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	11, 181, 304
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	295, 412
HpyCH4V	TGCA	2 cut(s)	449, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 434
HpyF3I	CTNAG	1 cut(s)	398
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	4 cut(s)	64, 79, 106, 449
HspAI	GCGC	2 cut(s)	64, 502
LmnI	GCTCC	1 cut(s)	97
MaeI	CTAG	4 cut(s)	32, 149, 176, 505
MaeIII	GTNAC	3 cut(s)	86, 105, 461
MboII	GAAGA	1 cut(s)	428
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	14, 235
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	3 cut(s)	174, 260, 327
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	2 cut(s)	246, 407
MslI	CAYNNNNRTG	2 cut(s)	188, 257
Msp20I	TGGCCA	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	145, 377
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	2 cut(s)	145, 377
MwoI	GCNNNNNNNGC	2 cut(s)	149, 434
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	4 cut(s)	64, 79, 106, 449
NmuCI	GTSAC	2 cut(s)	86, 105
NspI	RCATGY	1 cut(s)	106
OliI	CACNNNNGTG	1 cut(s)	188
PciI	ACATGT	1 cut(s)	102
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	381, 441
PscI	ACATGT	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	143, 375
PspGI	CCWGG	2 cut(s)	143, 375
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	188, 257
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	246, 407
ScrFI	CCNGG	2 cut(s)	145, 377
SetI	ASST	8 cut(s)	132, 166, 227, 246, 252, 312, 319, 327
SmiMI	CAYNNNNRTG	2 cut(s)	188, 257
Sse9I	AATT	2 cut(s)	14, 235
SspMI	CTAG	4 cut(s)	32, 149, 176, 505
StyD4I	CCNGG	2 cut(s)	143, 375
StyI	CCWWGG	2 cut(s)	126, 225
TaaI	ACNGT	2 cut(s)	295, 412
TaqI	TCGA	3 cut(s)	201, 240, 303
TasI	AATT	2 cut(s)	14, 235
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	381, 441
Tru1I	TTAA	2 cut(s)	246, 407
Tru9I	TTAA	2 cut(s)	246, 407
TscAI	CASTG	3 cut(s)	292, 300, 489
TseFI	GTSAC	2 cut(s)	86, 105
Tsp45I	GTSAC	2 cut(s)	86, 105
TspRI	CASTG	3 cut(s)	292, 300, 489
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	303
XspI	CTAG	4 cut(s)	32, 149, 176, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.