Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006725.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

3602 .. 4015

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006725.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggaaatggtaaccgctgaggagctagccccccagcagtcagaccggaacctacacgtggacggctccgcttgtgctaaggccagcagcgccagagtcatcttgaagggactaaggggactaaacgtggaatacgcgttgaaattcaacttcaaagcctcaaacaacatggcggaagactcccagttagtcgtcaaccaggtcaacgacagtttccaggccaaggaccaacagttggcggcatacttgggttacgtcaagacgctcctcaaaaagtttaaattccacaacaataagcagatcctagggaaaagaaagccaaagtcgattcgctggccagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

114

Amino Acids

12.85

Weight (kDa)

9.68

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccII	CGCG	1 cut(s)	137
AciI	CCGC	4 cut(s)	15, 69, 173, 239
AclWI	GGATC	1 cut(s)	295
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	2 cut(s)	143, 281
AcvI	CACGTG	1 cut(s)	58
AfiI	CCNNNNNNNGG	3 cut(s)	58, 223, 235
AflIII	ACRYGT	2 cut(s)	55, 135
AgsI	TTSAA	4 cut(s)	106, 142, 148, 154
AjnI	CCWGG	2 cut(s)	198, 216
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	3 cut(s)	81, 219, 335
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	143, 281
AspA2I	CCTAGG	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	226
AsuNHI	GCTAGC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	226
AvrII	CCTAGG	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	2 cut(s)	200, 218
BfaI	CTAG	3 cut(s)	26, 305, 343
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	2 cut(s)	88, 240
BlnI	CCTAGG	1 cut(s)	304
BlsI	GCNGC	2 cut(s)	89, 241
Bme1390I	CCNGG	2 cut(s)	200, 218
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	50, 67
BmrFI	CCNGG	2 cut(s)	200, 218
BmrI	ACTGGG	1 cut(s)	178
BmtI	GCTAGC	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	183
Bpu10I	CCTNAGC	2 cut(s)	18, 78
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	222, 304
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 223, 235
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	200, 218
BseDI	CCNNGG	2 cut(s)	222, 304
BseLI	CCNNNNNNNGG	3 cut(s)	58, 223, 235
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	35, 257
BseXI	GCAGC	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	83, 221, 337
BsiSI	CCGG	1 cut(s)	46
BslFI	GGGAC	2 cut(s)	123, 132
BslI	CCNNNNNNNGG	3 cut(s)	58, 223, 235
BsmFI	GGGAC	2 cut(s)	123, 132
BsnI	GGCC	3 cut(s)	83, 221, 337
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	4 cut(s)	15, 69, 173, 239
BspANI	GGCC	3 cut(s)	83, 221, 337
BspCNI	CTCAG	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	50, 67
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	222, 304
BssMI	GATC	1 cut(s)	300
BssT1I	CCWWGG	2 cut(s)	222, 304
Bst2UI	CCWGG	2 cut(s)	200, 218
Bst4CI	ACNGT	2 cut(s)	212, 234
BstBAI	YACGTR	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	27, 85, 335
BstDEI	CTNAG	3 cut(s)	18, 78, 113
BstEII	GGTNACC	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	200, 218
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	198, 216
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	3 cut(s)	83, 221, 337
Cac8I	GCNNGC	3 cut(s)	27, 85, 335
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	198
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	8 cut(s)	25, 29, 66, 83, 158, 221, 319, 337
CviKI_1	RGCY	8 cut(s)	25, 29, 66, 83, 158, 221, 319, 337
DdeI	CTNAG	3 cut(s)	18, 78, 113
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	2 cut(s)	222, 304
Eco47I	GGWCC	1 cut(s)	226
Eco72I	CACGTG	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	198, 216
EcoT14I	CCWWGG	2 cut(s)	222, 304
ErhI	CCWWGG	2 cut(s)	222, 304
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 244
FaqI	GGGAC	2 cut(s)	123, 132
FatI	CATG	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	88, 240
Fsp4HI	GCNGC	2 cut(s)	88, 240
FspBI	CTAG	3 cut(s)	26, 305, 343
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	88, 240
GsaI	CCCAGC	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	83, 221, 337
HapII	CCGG	1 cut(s)	46
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	2 cut(s)	196, 205
HindII	GTYRAC	2 cut(s)	196, 205
HinfI	GANTC	3 cut(s)	96, 179, 328
HpaII	CCGG	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	61, 196, 205
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	103, 259
Hpy8I	GTNNAC	3 cut(s)	61, 196, 205
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	212, 234
HpyCH4IV	ACGT	3 cut(s)	57, 126, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	18, 78, 113
HpySE526I	ACGT	3 cut(s)	57, 126, 255
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	22, 71, 270
Lsp1109I	GCAGC	1 cut(s)	99
MabI	ACCWGGT	1 cut(s)	198
MaeI	CTAG	3 cut(s)	26, 305, 343
MaeII	ACGT	3 cut(s)	57, 126, 255
MaeIII	GTNAC	2 cut(s)	10, 251
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	2 cut(s)	143, 281
MluI	ACGCGT	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	337
MlyI	GAGTC	2 cut(s)	105, 173
MnlI	CCTC	3 cut(s)	13, 169, 278
Mox20I	TGGCCA	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	200, 218
MvaI	CCWGG	2 cut(s)	200, 218
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	89
NdeII	GATC	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	50, 67
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	89, 241
PleI	GAGTC	2 cut(s)	104, 173
PmaCI	CACGTG	1 cut(s)	58
PmlI	CACGTG	1 cut(s)	58
PpsI	GAGTC	2 cut(s)	104, 173
Ppu21I	YACGTR	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	198, 216
PspCI	CACGTG	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	33
PspGI	CCWGG	2 cut(s)	198, 216
PspN4I	GGNNCC	2 cut(s)	50, 67
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	88, 240
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	105, 173
ScrFI	CCNGG	2 cut(s)	200, 218
SetI	ASST	6 cut(s)	27, 54, 60, 129, 204, 258
SexAI	ACCWGGT	1 cut(s)	198
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	143, 281
SsiI	CCGC	4 cut(s)	15, 69, 173, 239
SspMI	CTAG	3 cut(s)	26, 305, 343
StyD4I	CCNGG	2 cut(s)	198, 216
StyI	CCWWGG	2 cut(s)	222, 304
TaaI	ACNGT	2 cut(s)	212, 234
TaiI	ACGT	3 cut(s)	60, 129, 258
TaqI	TCGA	1 cut(s)	326
TasI	AATT	2 cut(s)	143, 281
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseI	GCWGC	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	2 cut(s)	143, 281
XmaJI	CCTAGG	1 cut(s)	304
XspI	CTAG	3 cut(s)	26, 305, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.