Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

1527264 .. 1528027

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01692.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCCGAGTGGTGTCTTGATTAAGAGGAAGGCAGACAATACAATCCATGTACATTATGAAGGAGCTGCTGAGATGATACCAGAAATGTGCACATGTTATACAATGCCTTCTGAGTTGTTAAGGATATGGATTACAATGAGAAAAAGAAAGTTTGAGCAGATTATTCTAGGAATGTCAGCCAGCAGTCTCAGATGCATCGTGTTCGCACATAAAGAGGTTCCAGCAGAGGAGCAAATTGAGGTAGACCATAAAGTTTTGCTACAAGGAAGATGGATTGACCCTTTCGGGACTTGTAGACCCCAGCCACATAATGTGGAATACTTGAGCCTGGTCAGAAACGCTCGGACCAGTCATAGAAGGTGTCGAATTTCTCACTACACTTCAGAACAGAGAATGGAGAAGGTTGAGGCAAAATGTGTAAATTCAAGGTCTCCTCCTTTTGATAAGCTTCTGATGGTACAATGCCTGAAGCAGCAAGGTCATGTAGTCGCAGTGACAGGTGATGGAACCTATGATGCAGCATCATTGAAAGAAGCTGATATAGTCCTTTCTACGGGAATTCAAGGCACAGAAGTTGCTAGAGAGAGCTCAGACATTGTGATCATGGATGATAACTTTGTTTTAGTTGACATGGTTTTCAGATGGAGAAGATGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

220

Amino Acids

25.05

Weight (kDa)

8.12

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	243, 295
AcsI	RAATTY	3 cut(s)	366, 421, 558
AcuI	CTGAAG	2 cut(s)	366, 488
AfaI	GTAC	2 cut(s)	51, 459
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	426, 529, 563
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	4 cut(s)	65, 448, 536, 588
AluI	AGCT	4 cut(s)	65, 448, 536, 588
Alw21I	GWGCWC	2 cut(s)	92, 590
Alw26I	GTCTC	2 cut(s)	191, 435
Alw44I	GTGCAC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	65, 472, 518
ApoI	RAATTY	3 cut(s)	366, 421, 558
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	92, 590
BbvI	GCAGC	3 cut(s)	52, 484, 530
BccI	CCATC	4 cut(s)	264, 448, 497, 636
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BciT130I	CCWGG	1 cut(s)	329
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	191, 435
BfaI	CTAG	2 cut(s)	167, 579
BisI	GCNGC	3 cut(s)	66, 473, 519
BlsI	GCNGC	3 cut(s)	67, 474, 520
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	219, 508
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	5 cut(s)	182, 204, 505, 530, 641
BpuEI	CTTGAG	1 cut(s)	343
BsaI	GGTCTC	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	4 cut(s)	60, 102, 202, 603
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	2 cut(s)	242, 423
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	52, 484, 530
BseYI	CCCAGC	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	92, 590
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	191, 435
BsmFI	GGGAC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	92, 590
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	600
BspCNI	CTCAG	4 cut(s)	61, 103, 201, 602
BspLI	GGNNCC	2 cut(s)	219, 508
BspTNI	GGTCTC	1 cut(s)	435
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	4 cut(s)	69, 111, 188, 589
BstF5I	GGATG	1 cut(s)	613
BstKTI	GATC	1 cut(s)	603
BstMAI	GTCTC	2 cut(s)	191, 435
BstMBI	GATC	1 cut(s)	600
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	3 cut(s)	52, 484, 530
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	50, 458
CviAII	CATG	5 cut(s)	47, 93, 482, 604, 631
CviJI	RGCY	7 cut(s)	65, 179, 304, 327, 448, 536, 588
CviKI_1	RGCY	7 cut(s)	65, 179, 304, 327, 448, 536, 588
CviQI	GTAC	2 cut(s)	50, 458
DdeI	CTNAG	4 cut(s)	69, 111, 188, 589
DpnI	GATC	1 cut(s)	602
DpnII	GATC	1 cut(s)	600
Ecl136II	GAGCTC	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	590
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	588
Eco57I	CTGAAG	2 cut(s)	366, 488
EcoICRI	GAGCTC	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	590
FaeI	CATG	5 cut(s)	50, 96, 485, 607, 634
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	5 cut(s)	46, 92, 481, 603, 630
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	2 cut(s)	243, 295
Fnu4HI	GCNGC	3 cut(s)	66, 473, 519
FokI	GGATG	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	3 cut(s)	66, 473, 519
FspBI	CTAG	2 cut(s)	167, 579
GluI	GCNGC	3 cut(s)	66, 473, 519
GsaI	CCCAGC	1 cut(s)	304
Hin1II	CATG	5 cut(s)	50, 96, 485, 607, 634
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	446
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	4 cut(s)	90, 244, 296, 628
Hpy188I	TCNGA	8 cut(s)	112, 191, 335, 345, 385, 453, 592, 641
Hpy188III	TCNNGA	2 cut(s)	16, 286
Hpy8I	GTNNAC	4 cut(s)	90, 244, 296, 628
HpyAV	CCTTC	5 cut(s)	22, 53, 117, 351, 394
HpyCH4V	TGCA	3 cut(s)	90, 195, 518
HpyF3I	CTNAG	4 cut(s)	69, 111, 188, 589
Hsp92II	CATG	5 cut(s)	50, 96, 485, 607, 634
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	1 cut(s)	600
LmnI	GCTCC	2 cut(s)	62, 229
LpnPI	CCDG	9 cut(s)	93, 193, 234, 314, 314, 341, 361, 479, 483
Lsp1109I	GCAGC	3 cut(s)	52, 484, 530
LweI	GCATC	5 cut(s)	182, 204, 505, 530, 641
MaeI	CTAG	2 cut(s)	167, 579
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	1 cut(s)	602
MboI	GATC	1 cut(s)	600
MboII	GAAGA	2 cut(s)	279, 660
MhlI	GDGCHC	2 cut(s)	92, 590
MluCI	AATT	4 cut(s)	234, 366, 421, 558
MnlI	CCTC	6 cut(s)	18, 208, 220, 232, 400, 444
Mph1103I	ATGCAT	1 cut(s)	197
MseI	TTAA	3 cut(s)	21, 119, 658
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
NdeII	GATC	1 cut(s)	600
NlaIII	CATG	5 cut(s)	50, 96, 485, 607, 634
NlaIV	GGNNCC	2 cut(s)	219, 508
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	197
NspI	RCATGY	1 cut(s)	96
PciI	ACATGT	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	67, 474, 520
PscI	ACATGT	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	327
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	219, 508
PspPI	GGNCC	1 cut(s)	345
RsaI	GTAC	2 cut(s)	51, 459
RsaNI	GTAC	2 cut(s)	50, 458
SacI	GAGCTC	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	21, 119, 658
SatI	GCNGC	3 cut(s)	66, 473, 519
Sau3AI	GATC	1 cut(s)	600
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	92, 590
SfaNI	GCATC	5 cut(s)	182, 204, 505, 530, 641
SinI	GGWCC	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	4 cut(s)	234, 366, 421, 558
SspMI	CTAG	2 cut(s)	167, 579
SstI	GAGCTC	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	327
TaqI	TCGA	1 cut(s)	364
TasI	AATT	4 cut(s)	234, 366, 421, 558
TatI	WGTACW	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	21, 119, 658
Tru9I	TTAA	3 cut(s)	21, 119, 658
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	3 cut(s)	65, 472, 518
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	498
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	3 cut(s)	366, 421, 558
XceI	RCATGY	1 cut(s)	96
XmiI	GTMKAC	2 cut(s)	243, 295
XspI	CTAG	2 cut(s)	167, 579
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.