RLG00000010037

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
61941136 .. 61941847
712 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010037

Sequence Viewer

Length: 471 bp
ATGAACTTTGAGCAGATTAGTCAAGGTATGGCAGCAAGCAGCCTCAGATGCATCGCATTCGTATATAAAGAAATTCCAGCAGAGGAGGAAGTTGAGGTAGATCAGAAAGTTGTGCTAAAGGAAGATGGCTTGACCCTATTGGGACTTGTAGGTCTTAAAGTCCATGTCGCTTCTGATGGTCAATGCTTGAAGCAAAAAGGTCATGCAGTTGCAGTGACTGGTGATGGCACCAATAATGCACCGGCATTGAAAGAAGCTGATATAGTCCTTTCTAGGGGAATTCAAGGCACAGAAGTTGCTAGAGAGAGCTCAGACATTGTGATCATGGATGATAAGTTTGCTTCAGTTGCCACAGTTTTGAGATGGAGAAGATGCGTTTACAATCAGATCTACAAGTTCATCCAATTCCAGTTCAATGTAAATGTTGCTGCTGTTGTGATCGACTCTGTTGCAGCCATTCATGACTCATAA

Protein Analysis

157

Amino Acids

16.98

Weight (kDa)

5.15

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 72, 279
AcuI CTGAAG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 4 cut(s) 190, 250, 284, 415
AluBI AGCT 2 cut(s) 257, 309
AluI AGCT 2 cut(s) 257, 309
Alw21I GWGCWC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 218
ApeKI GCWGC 4 cut(s) 32, 39, 428, 452
ApoI RAATTY 2 cut(s) 72, 279
AsuHPI GGTGA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 4 cut(s) 44, 51, 415, 464
BccI CCATC 4 cut(s) 119, 170, 218, 357
BcgI CGANNNNNNTGC 4 cut(s) 40, 74, 431, 465
BclI TGATCA 1 cut(s) 321
BfaI CTAG 2 cut(s) 273, 300
BglII AGATCT 1 cut(s) 387
BisI GCNGC 4 cut(s) 33, 40, 429, 453
BlsI GCNGC 4 cut(s) 34, 41, 430, 454
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 3 cut(s) 38, 60, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 2 cut(s) 223, 409
BseGI GGATG 2 cut(s) 334, 399
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 58, 324
BseNI ACTGG 2 cut(s) 223, 409
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 4 cut(s) 44, 51, 415, 464
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 156
BsmI GAATGC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 4 cut(s) 100, 321, 387, 438
BspCNI CTCAG 2 cut(s) 57, 323
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 2 cut(s) 223, 409
BssAI RCCGGY 1 cut(s) 241
BssMI GATC 4 cut(s) 100, 321, 387, 438
Bst4CI ACNGT 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 44, 310
BstF5I GGATG 2 cut(s) 334, 399
BstKTI GATC 4 cut(s) 103, 324, 390, 441
BstMBI GATC 4 cut(s) 100, 321, 387, 438
BstMWI GCNNNNNNNGC 2 cut(s) 48, 347
BstV1I GCAGC 4 cut(s) 44, 51, 415, 464
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
BtgZI GCGATG 1 cut(s) 37
BtsCI GGATG 2 cut(s) 334, 399
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 241
CviAII CATG 4 cut(s) 164, 203, 325, 461
CviJI RGCY 5 cut(s) 42, 129, 257, 309, 455
CviKI_1 RGCY 5 cut(s) 42, 129, 257, 309, 455
DdeI CTNAG 2 cut(s) 44, 310
DpnI GATC 4 cut(s) 102, 323, 389, 440
DpnII GATC 4 cut(s) 100, 321, 387, 438
DrdI GACNNNNNNGTC 1 cut(s) 150
DseDI GACNNNNNNGTC 1 cut(s) 150
Ecl136II GAGCTC 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 311
FaeI CATG 4 cut(s) 167, 206, 328, 464
FaiI YATR 9 cut(s) 29, 64, 66, 165, 204, 263, 326, 462, 469
FaqI GGGAC 1 cut(s) 156
FatI CATG 4 cut(s) 163, 202, 324, 460
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 33, 40, 429, 453
FokI GGATG 2 cut(s) 341, 386
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 4 cut(s) 33, 40, 429, 453
FspBI CTAG 2 cut(s) 273, 300
GluI GCNGC 4 cut(s) 33, 40, 429, 453
HapII CCGG 1 cut(s) 242
Hin1II CATG 4 cut(s) 167, 206, 328, 464
HinfI GANTC 2 cut(s) 443, 464
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 5 cut(s) 47, 105, 175, 313, 387
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 51, 206, 212, 239, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 347
HpyF3I CTNAG 2 cut(s) 44, 310
Hsp92II CATG 4 cut(s) 167, 206, 328, 464
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 4 cut(s) 100, 321, 387, 438
LpnPI CCDG 4 cut(s) 90, 204, 255, 422
Lsp1109I GCAGC 4 cut(s) 44, 51, 415, 464
LweI GCATC 3 cut(s) 38, 60, 362
MaeI CTAG 2 cut(s) 273, 300
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 102, 323, 389, 440
MboI GATC 4 cut(s) 100, 321, 387, 438
MboII GAAGA 2 cut(s) 134, 381
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 3 cut(s) 72, 279, 404
MlyI GAGTC 2 cut(s) 437, 458
MnlI CCTC 4 cut(s) 53, 76, 79, 88
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 48, 347
NdeII GATC 4 cut(s) 100, 321, 387, 438
NlaIII CATG 4 cut(s) 167, 206, 328, 464
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 53
PagI TCATGA 1 cut(s) 460
PctI GAATGC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 34, 41, 430, 454
PleI GAGTC 2 cut(s) 437, 458
PpsI GAGTC 2 cut(s) 437, 458
Psp124BI GAGCTC 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 387
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 4 cut(s) 33, 40, 429, 453
Sau3AI GATC 4 cut(s) 100, 321, 387, 438
SchI GAGTC 2 cut(s) 437, 458
SduI GDGCHC 1 cut(s) 311
SetI ASST 6 cut(s) 28, 99, 154, 202, 259, 311
SfaNI GCATC 3 cut(s) 38, 60, 362
Sse9I AATT 3 cut(s) 72, 279, 404
SspMI CTAG 2 cut(s) 273, 300
SstI GAGCTC 1 cut(s) 311
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 441
TasI AATT 3 cut(s) 72, 279, 404
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 4 cut(s) 32, 39, 428, 452
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 17, 388, 449
TspRI CASTG 1 cut(s) 219
XapI RAATTY 2 cut(s) 72, 279
XspI CTAG 2 cut(s) 273, 300
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.