Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8110336.1

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 577

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8110336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcagccagcagcctcagatgcatcgcattcgcacataaagaagttgcagcagaggagcaagttgaaggagaccagaaagttgtgctaaaggaagatggtttgaccctattgggacttgtaggtcttaaagatccatgtcgtccaggagtgaagaaagcagttgaagactgtcaatatgcaggtgtgaacatcaaaatgatcactggcgataatgttttcactgcaaaagccatagctactgagtgtgggatactcaggcctggtcaggacatgctcggagcagtcatagaaggtgtcgaatttcgcaactacactccagaacagagaatggagaaggttgaggcaatatgtgtaatggcgaggtcttctccttttgataagcttctgatggtacaatgcttgaagcagaaaggtcatgtagttgcagtgacaggtgatggaaccaatgatgcaccagcattgaaagaagctgatataggactttctatggggattcaaggcacagaagttgctaaagagagctcggatattgtgatcatggatgataactttgcttcagttgctaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

190

Amino Acids

20.25

Weight (kDa)

4.85

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
AasI	GACNNNNNNGTC	1 cut(s)	123
Acc36I	ACCTGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	396
AgsI	TTSAA	5 cut(s)	68, 167, 406, 466, 500
AjnI	CCWGG	2 cut(s)	145, 262
AluBI	AGCT	4 cut(s)	239, 385, 473, 525
AluI	AGCT	4 cut(s)	239, 385, 473, 525
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	5, 12, 50
ApoI	RAATTY	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	2 cut(s)	174, 360
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	17, 24, 62
BccI	CCATC	3 cut(s)	92, 385, 434
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	2 cut(s)	147, 264
BciVI	GTATCC	1 cut(s)	246
BclI	TGATCA	2 cut(s)	201, 537
BcoDI	GTCTC	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	3 cut(s)	6, 13, 51
BlsI	GCNGC	3 cut(s)	7, 14, 52
Bme1390I	CCNGG	2 cut(s)	147, 264
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	147, 264
BmsI	GCATC	3 cut(s)	11, 33, 442
BpiI	GAAGAC	2 cut(s)	174, 360
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	147, 264
BseGI	GGATG	1 cut(s)	550
BseMII	CTCAG	3 cut(s)	31, 234, 271
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	17, 24, 62
BshFI	GGCC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	262
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	133, 201, 537
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	3 cut(s)	30, 235, 270
BspLI	GGNNCC	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	133, 201, 537
Bst2UI	CCWGG	2 cut(s)	147, 264
Bst4CI	ACNGT	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	3 cut(s)	17, 243, 257
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	3 cut(s)	136, 204, 540
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	3 cut(s)	133, 201, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 563
BstNI	CCWGG	2 cut(s)	147, 264
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	2 cut(s)	145, 262
BstV1I	GCAGC	3 cut(s)	17, 24, 62
BstV2I	GAAGAC	2 cut(s)	174, 360
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	2 cut(s)	222, 435
BtsIMutI	CAGTG	3 cut(s)	204, 222, 435
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	4 cut(s)	138, 274, 419, 541
CviJI	RGCY	8 cut(s)	8, 15, 233, 239, 262, 385, 473, 525
CviKI_1	RGCY	8 cut(s)	8, 15, 233, 239, 262, 385, 473, 525
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	3 cut(s)	17, 243, 257
DpnI	GATC	3 cut(s)	135, 203, 539
DpnII	GATC	3 cut(s)	133, 201, 537
DrdI	GACNNNNNNGTC	1 cut(s)	123
DseDI	GACNNNNNNGTC	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	525
Eco57I	CTGAAG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	2 cut(s)	145, 262
EcoT22I	ATGCAT	1 cut(s)	26
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	4 cut(s)	141, 277, 422, 544
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	4 cut(s)	137, 273, 418, 540
FbaI	TGATCA	2 cut(s)	201, 537
Fnu4HI	GCNGC	3 cut(s)	6, 13, 51
FokI	GGATG	1 cut(s)	557
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	6, 13, 51
GluI	GCNGC	3 cut(s)	6, 13, 51
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	141, 277, 422, 544
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	496
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	4 cut(s)	20, 281, 390, 529
Hpy188III	TCNNGA	2 cut(s)	269, 320
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	62, 287, 331
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	6 cut(s)	24, 50, 182, 227, 428, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 563
HpyF3I	CTNAG	3 cut(s)	17, 243, 257
Hsp92II	CATG	4 cut(s)	141, 277, 422, 544
Ksp22I	TGATCA	2 cut(s)	201, 537
Kzo9I	GATC	3 cut(s)	133, 201, 537
LmnI	GCTCC	2 cut(s)	58, 281
Lsp1109I	GCAGC	3 cut(s)	17, 24, 62
LweI	GCATC	3 cut(s)	11, 33, 442
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	3 cut(s)	135, 203, 539
MboI	GATC	3 cut(s)	133, 201, 537
MboII	GAAGA	4 cut(s)	107, 166, 179, 360
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	1 cut(s)	302
MnlI	CCTC	4 cut(s)	26, 49, 337, 357
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	147, 264
Mva1269I	GAATGC	1 cut(s)	29
MvaI	CCWGG	2 cut(s)	147, 264
MwoI	GCNNNNNNNGC	2 cut(s)	21, 563
NdeII	GATC	3 cut(s)	133, 201, 537
NlaIII	CATG	4 cut(s)	141, 277, 422, 544
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	173
PceI	AGGCCT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	496
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	7, 14, 52
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	145, 262
PspGI	CCWGG	2 cut(s)	145, 262
PspN4I	GGNNCC	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	6, 13, 51
Sau3AI	GATC	3 cut(s)	133, 201, 537
ScrFI	CCNGG	2 cut(s)	147, 264
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	3 cut(s)	11, 33, 442
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	302
SseBI	AGGCCT	1 cut(s)	262
SstI	GAGCTC	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	145, 262
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	3 cut(s)	211, 229, 435
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	3 cut(s)	5, 12, 50
Tsp45I	GTSAC	1 cut(s)	430
TspRI	CASTG	3 cut(s)	211, 229, 435
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.