MD16G1201800.v1.1

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
18322679 .. 18325762
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1201800.v1.1.491

Sequence Viewer

Length: 3084 bp
ATGTCTACCACCCTGCATGCAAAACTGGGTTGCATTGAAATCAGGCTGCTTTTCGATGTTCAGAAAAGCACTCTTAGCAAACACCAAAGAAATTGGCGTTCGGCTTTTGCCAAAATCTACTGCTCCAGAGCCTTCAACCTTTCTCTACCAAAATACAAAAACACCAAAATATCTCGATCAACTTCTTATGCCGCCATTACTGTTGATTCATCAGATAGCTTATTCCATTTTGATCAAACTACCCTCACTAACCTTGTCAAGCAGAAAAATCTCAACCAGCTTCAGGAGCTGGGAGGGGTTGAAGAAATTGCCTCCGCTCTCAAAACAGACGCAGAGCACGGATTCCATAGTGGCGATGATCCCGCAGACGACATTGCGAAAAGACTCAAGGCATTTGGCTCGAACACGTACAAGCGGCCACCAACAAAAGGGTTCTTCCACTTTGTGTTGGAGGCCTTCAAAGACCTCACAATTCTCATCCTCTTAGGCTGCGCTGCGCTTTCTCTCGCCTTGGGAATCAAAGTGCACGGCCTAAAAGAAGGATGGATCGATGGCGGAAGTATATTTCTCGCAATCATTCTGGTAATTTCTGTATCTGCTGTGAGTAATTTTAGACAGAATAGACAATTTGATAAGTTGTCCAAAGTCAGCGATAATGTCCAAATCGAAGCTGTGAGAGGCGGCAGGCGCCAGCAGATTTCAATATTCGAAATAGTAGTTGGTGATGTCATTTGTTTAAAGATCGGAGACCAAGTTCCGGCCGATGGATTGTTTCTAGACGGCCATTCGTTACAAGTAGACGAATCGAGCATGACAGGGGAGAGTGATCATGTCGAAATTAGTCACCACCAGAATCCTTTCTTGTTTTCTGGCACAAAAGTGGTTGATGGCTACGCTCGGATGCTTGTAACCTCTGTTGGAATGAACACGACATGGGGCGAAATGATGAGCCAAATCAGCCGCGACAATGGTGAAGAGACGCCTCTGCAAGCTCGGCTCAACAAGCTAACGTCATCGATTGGTAAAGTTGGTTTAGTAGTTGCATTTTTAGTCCTGATTGTCTTGATGGTTAGGTACTTCACTGGAAATACAGAGGACGAGAATGGAAACCAAGAGTATAATGGCAGCAAGACTAAAGTTGACGATATATTAAACGCGGTCGTAGGGATTGTCGCGGCTGCGGTTACAATTGTTGTGGTGGCAATTCCGGAAGGCCTGCCTCTGGCTGTGACTCTAACGCTTGCGTATTCGATGAAGAGAATGATGGCAGATAAGGCGATGGTGAGGAAGCTCTCTGCTTGTGAGACGATGGGGTCTGCCACCGTCATTTGTACCGACAAAACAGGCACTCTCACCATGAATGAAATGAAGGTGACCAAGTTTTGGCTTGGCGAGGAACCCGTGGAAGAAGAGGCGTATTCATCTATATCTCCTTTTGTTTGTAATTTGATTCATGAAGGGGTTGCTCTGAACACAACCGGGAGTGTGTTCAGGCCTAATTCGGGTTCGAAAATTGAAATCTCGGGGAGTCCTACTGAGAAGGCGATTCTTTCATGGGCGGTGCATGTGGCTAAGATGGATATGCAGAAAGTGGTGAAGAGTTGTGACACTCTTTATGTCGAGGCCTTCAATTCGCAGAAGAAACGGAGTGGGGTTTTGATGAAGCGGAAGGCGGACGATTATATGCAAGCACATTGGAAAGGAGCTCCAGAGATGGTATTAGCAATGTGCACAAGTTACTACAACGCATCTGGAGTTCTTAAAGATATGGATGAGAACTCGAAATTGAAATTCGAGCAGATTATCCAAGGTATGGCGGCGAGCAGCCTGAGATGCATTGCTTTTGCATACAAAGAAATTGAGGTAAAAGAGCAAGTGGATCAAGAACATAAAAATTTGCTAAAAGAAAATGGATTGACACTATTAGGCCTTGTTGGGTTAAAAGATCCATGCCGCCCAGGGGTGAAGAAAGCTGTTGAAGACTGTCAACGTGCAGGGGTGAATGTTAAAATGATCACAGGCGACAATGTGTTCACTGCTAAGGCAATAGCCACAGAATGCGGGATACTCAAGCCTGATCAGGACATGTTCTTCAGCGGTGCGGTGATTGAAGGCGTGCAATTTCGCAATTACACACCCGAAGAACGAATGGAGAAGGTGGACAAAATCTGTGTGATGGCAAGGTCCTCCCCATTTGACAAGCTTCTCATGGTGCAGTGCTTGAAACAGCTAGGCCATGTGGTGGCAGTGACGGGGGATGGCACGAACGATGCGCCCGCATTGAAGGAAGCTGACATCGGACTTTCCATGGGTATTCAAGGCACAGAAGTTGCGAAAGAATGCTCGGATATCGTGATCATGGACGACAACTTTTCGTCGGTGGCCACGGTTTTAAGGTGGGGAAGATGTGTTTACGAAAACATCCAGAAGTTCATCCAATTCCAACTCACCGTCAATGTCGCAGCGCTGGTGATCAACTTTGTGGCGGCAATTTCCGCCGGTGAAGTCCCGTTAACAGCTGTTCAGTTACTGTGGGTGAATTTGATCATGGACACACTAGGTGCTCTGGCTCTCGCCACAGAGAAGCCAACGAAGGAGCTCATGAAGAAAAAGCCGGTTGGGAGGACAGAGCCTCTGATCACCAACATAATGTGGAGGAACCTCCTGCCTCAAGCAGTCTACCAGATTGCAATCCTCCTAACATTGCAGTTCAAAGGAAAATCGATCTTCGGCGTGGAGGACAAGGTGAAGGACACATTGATCTTCAACACATTTGTGTTGTGCCAGGTGTTCAATGAGTTCAATGCTAGGAAGCTTGAGAAGAAGAATGTGTTCAGAGGAATCCACACCAACAAGTTGTTTATGGGGATTATTGGCGTCACTATTTTGCTGCAGGTGGTGATGGTGGAGTATTTGAAGAAGTTTGCAGATACAGAAAGGTTGAATTGGGGGCAGTGGGGTGCTTGTGTTGGTATTGCAGCAGTCTCTTGGCCAATTGGTTGGGTTGTCAAGTCTATTCCTTTCCCTGAGACACCTATTTTCAGCTATCTCAAGTGGAAGAAGTCGAAGAAGAACTCTATTTGA

Protein Analysis

1028

Amino Acids

113.36

Weight (kDa)

8.46

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 97 - 168 5.6e-15 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 223 - 319 7.9e-22 P-type ATPase actuator domain
Hydrolase PF00702 442 - 765 2.3e-13 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 482 - 653 4.6e-30 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 836 - 1005 3.9e-49 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2884
AasI GACNNNNNNGTC 1 cut(s) 1312
Acc36I ACCTGC 1 cut(s) 2884
AccB1I GGYRCC 1 cut(s) 687
AccB7I CCANNNNNTGG 3 cut(s) 1383, 1813, 2242
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 3 cut(s) 5, 798, 2679
AccII CGCG 3 cut(s) 963, 1157, 1175
AccIII TCCGGA 1 cut(s) 1207
AclWI GGATC 4 cut(s) 353, 554, 1887, 1940
AcoI YGGCCR 5 cut(s) 416, 759, 781, 2382, 2990
AcsI RAATTY 3 cut(s) 1790, 1894, 2539
AcuI CTGAAG 2 cut(s) 266, 2077
AcyI GRCGYC 3 cut(s) 688, 980, 2877
AdeI CACNNNGTG 2 cut(s) 445, 2561
AfaI GTAC 3 cut(s) 410, 1076, 1333
AfeI AGCGCT 1 cut(s) 2466
AflIII ACRYGT 2 cut(s) 405, 2085
AjnI CCWGG 2 cut(s) 1957, 2784
AjuI GAANNNNNNNTTGG 2 cut(s) 702, 734
AleI CACNNNNGTG 2 cut(s) 878, 2774
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
Alw21I GWGCWC 6 cut(s) 339, 528, 1708, 1733, 2566, 2601
Alw26I GTCTC 5 cut(s) 741, 971, 1298, 2989, 3023
Alw44I GTGCAC 2 cut(s) 524, 1729
AlwI GGATC 4 cut(s) 353, 554, 1887, 1940
AlwNI CAGNNNCTG 2 cut(s) 289, 2530
Ama87I CYCGRG 1 cut(s) 1522
Aor13HI TCCGGA 1 cut(s) 1207
Aor51HI AGCGCT 1 cut(s) 2466
ApaLI GTGCAC 2 cut(s) 524, 1729
ApeKI GCWGC 9 cut(s) 46, 489, 494, 1125, 1178, 1824, 2462, 2890, 2978
ApoI RAATTY 3 cut(s) 1790, 1894, 2539
Asp700I GAANNNNTTC 2 cut(s) 857, 2831
AspLEI GCGC 5 cut(s) 494, 499, 690, 2275, 2467
AspS9I GGNCC 1 cut(s) 2184
AsuC2I CCSGG 1 cut(s) 1480
AsuII TTCGAA 2 cut(s) 708, 1508
AvaI CYCGRG 1 cut(s) 1522
AvaII GGWCC 1 cut(s) 2184
BaeGI GKGCMC 2 cut(s) 528, 1733
BalI TGGCCA 2 cut(s) 2384, 2992
BanI GGYRCC 1 cut(s) 687
BanII GRGCYC 2 cut(s) 1708, 2601
BbsI GAAGAC 1 cut(s) 1986
Bbv12I GWGCWC 6 cut(s) 339, 528, 1708, 1733, 2566, 2601
BbvI GCAGC 9 cut(s) 33, 476, 481, 1137, 1165, 1836, 2474, 2877, 2990
BceAI ACGGC 2 cut(s) 544, 796
BcgI CGANNNNNNTGC 2 cut(s) 381, 415
BciT130I CCWGG 2 cut(s) 1959, 2786
BciVI GTATCC 1 cut(s) 2058
BclI TGATCA 8 cut(s) 232, 826, 2013, 2077, 2355, 2472, 2544, 2637
BcnI CCSGG 1 cut(s) 1480
BcoDI GTCTC 5 cut(s) 741, 971, 1298, 2989, 3023
BfaI CTAG 4 cut(s) 776, 2231, 2558, 2808
BfmI CTRYAG 1 cut(s) 2891
BfoI RGCGCY 2 cut(s) 691, 2468
BfuAI ACCTGC 1 cut(s) 2884
BfuI GTATCC 1 cut(s) 2058
Bme1390I CCNGG 3 cut(s) 1480, 1959, 2786
Bme18I GGWCC 1 cut(s) 2184
BmeT110I CYCGRG 1 cut(s) 1522
BmgT120I GGNCC 1 cut(s) 2184
BmiI GGNNCC 3 cut(s) 689, 1398, 2660
BmrFI CCNGG 3 cut(s) 1480, 1959, 2786
BmrI ACTGGG 1 cut(s) 35
BmsI GCATC 4 cut(s) 891, 1757, 1823, 2260
BmuI ACTGGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 1986
BpmI CTGGAG 3 cut(s) 109, 1692, 1773
Bpu10I CCTNAGC 1 cut(s) 2040
Bpu14I TTCGAA 2 cut(s) 708, 1508
BpuEI CTTGAG 5 cut(s) 371, 2054, 2655, 2837, 3035
BpuMI CCSGG 1 cut(s) 1480
Bsa29I ATCGAT 3 cut(s) 549, 1016, 2723
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 2690
BsaHI GRCGYC 3 cut(s) 688, 980, 2877
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 7 cut(s) 510, 1401, 1807, 1957, 1958, 2307, 2385
BsaWI WCCGGW 1 cut(s) 1207
BsaXI ACNNNNNCTCC 2 cut(s) 738, 768
Bse118I RCCGGY 2 cut(s) 2498, 2614
Bse1I ACTGG 2 cut(s) 30, 1087
Bse3DI GCAATG 4 cut(s) 372, 1731, 1836, 2702
Bse8I GATNNNNATC 1 cut(s) 2690
BseAI TCCGGA 1 cut(s) 1207
BseBI CCWGG 2 cut(s) 1959, 2786
BseCI ATCGAT 3 cut(s) 549, 1016, 2723
BseDI CCNNGG 7 cut(s) 510, 1401, 1807, 1957, 1958, 2307, 2385
BseGI GGATG 7 cut(s) 477, 548, 906, 1777, 2263, 2421, 2433
BseJI GATNNNNATC 1 cut(s) 2690
BseMI GCAATG 4 cut(s) 372, 1731, 1836, 2702
BseMII CTCAG 3 cut(s) 1527, 1820, 3018
BseNI ACTGG 2 cut(s) 30, 1087
BseSI GKGCMC 2 cut(s) 528, 1733
BseX3I CGGCCG 1 cut(s) 759
BseXI GCAGC 9 cut(s) 33, 476, 481, 1137, 1165, 1836, 2474, 2877, 2990
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 2 cut(s) 2013, 2234
Bsh1236I CGCG 3 cut(s) 963, 1157, 1175
Bsh1285I CGRYCG 2 cut(s) 762, 1161
BshNI GGYRCC 1 cut(s) 687
BshVI ATCGAT 3 cut(s) 549, 1016, 2723
BsiEI CGRYCG 2 cut(s) 762, 1161
BsiHKAI GWGCWC 6 cut(s) 339, 528, 1708, 1733, 2566, 2601
BsiHKCI CYCGRG 1 cut(s) 1522
BsiSI CCGG 5 cut(s) 758, 1208, 1479, 2499, 2615
BslFI GGGAC 1 cut(s) 2492
BsmAI GTCTC 5 cut(s) 741, 971, 1298, 2989, 3023
BsmBI CGTCTC 2 cut(s) 971, 1298
BsmFI GGGAC 1 cut(s) 2492
BsmI GAATGC 2 cut(s) 2063, 2345
Bso31I GGTCTC 1 cut(s) 741
BsoBI CYCGRG 1 cut(s) 1522
Bsp119I TTCGAA 2 cut(s) 708, 1508
Bsp1286I GDGCHC 6 cut(s) 339, 528, 1708, 1733, 2566, 2601
Bsp13I TCCGGA 1 cut(s) 1207
Bsp19I CCATGG 1 cut(s) 2307
BspCNI CTCAG 3 cut(s) 1528, 1821, 3019
BspDI ATCGAT 3 cut(s) 549, 1016, 2723
BspEI TCCGGA 1 cut(s) 1207
BspFNI CGCG 3 cut(s) 963, 1157, 1175
BspHI TCATGA 2 cut(s) 1453, 2601
BspLI GGNNCC 3 cut(s) 689, 1398, 2660
BspMAI CTGCAG 1 cut(s) 2895
BspMI ACCTGC 1 cut(s) 2884
BspPI GGATC 4 cut(s) 353, 554, 1887, 1940
BspT104I TTCGAA 2 cut(s) 708, 1508
BspT107I GGYRCC 1 cut(s) 687
BspTNI GGTCTC 1 cut(s) 741
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 4 cut(s) 372, 1731, 1836, 2702
BsrFI RCCGGY 2 cut(s) 2498, 2614
BsrI ACTGG 2 cut(s) 30, 1087
BssAI RCCGGY 2 cut(s) 2498, 2614
BssECI CCNNGG 7 cut(s) 510, 1401, 1807, 1957, 1958, 2307, 2385
BssNI GRCGYC 3 cut(s) 688, 980, 2877
BssT1I CCWWGG 3 cut(s) 510, 1807, 2307
Bst2UI CCWGG 2 cut(s) 1959, 2786
Bst4CI ACNGT 6 cut(s) 202, 1324, 1985, 2389, 2452, 2532
Bst6I CTCTTC 4 cut(s) 969, 1250, 1404, 1592
BstACI GRCGYC 3 cut(s) 688, 980, 2877
BstBAI YACGTR 1 cut(s) 408
BstBI TTCGAA 2 cut(s) 708, 1508
BstDEI CTNAG 7 cut(s) 74, 484, 1536, 1572, 1829, 2040, 3027
BstDSI CCRYGG 3 cut(s) 1401, 2307, 2385
BstEII GGTNACC 1 cut(s) 1372
BstF5I GGATG 7 cut(s) 477, 548, 906, 1777, 2263, 2421, 2433
BstFNI CGCG 3 cut(s) 963, 1157, 1175
BstH2I RGCGCY 2 cut(s) 691, 2468
BstHHI GCGC 5 cut(s) 494, 499, 690, 2275, 2467
BstMAI GTCTC 5 cut(s) 741, 971, 1298, 2989, 3023
BstMCI CGRYCG 2 cut(s) 762, 1161
BstMWI GCNNNNNNNGC 9 cut(s) 75, 286, 687, 957, 994, 1003, 1274, 1833, 2495
BstNI CCWGG 2 cut(s) 1959, 2786
BstNSI RCATGY 3 cut(s) 20, 1568, 2089
BstPI GGTNACC 1 cut(s) 1372
BstSCI CCNGG 3 cut(s) 1478, 1957, 2784
BstSFI CTRYAG 1 cut(s) 2891
BstSLI GKGCMC 2 cut(s) 528, 1733
BstUI CGCG 3 cut(s) 963, 1157, 1175
BstV1I GCAGC 9 cut(s) 33, 476, 481, 1137, 1165, 1836, 2474, 2877, 2990
BstV2I GAAGAC 1 cut(s) 1986
BstX2I RGATCY 1 cut(s) 1945
BstXI CCANNNNNNTGG 1 cut(s) 3000
BstYI RGATCY 1 cut(s) 1945
BstZI CGGCCG 1 cut(s) 759
Bsu15I ATCGAT 3 cut(s) 549, 1016, 2723
BsuI GTATCC 1 cut(s) 2058
BsuTUI ATCGAT 3 cut(s) 549, 1016, 2723
BtgI CCRYGG 3 cut(s) 1401, 2307, 2385
BtgZI GCGATG 2 cut(s) 369, 1292
BtsCI GGATG 7 cut(s) 477, 548, 906, 1777, 2263, 2421, 2433
BtsI GCAGTG 4 cut(s) 2034, 2222, 2253, 2960
BtsIMutI CAGTG 5 cut(s) 1080, 2034, 2222, 2253, 2960
BveI ACCTGC 1 cut(s) 2884
CaiI CAGNNNCTG 2 cut(s) 289, 2530
CciI TCATGA 2 cut(s) 1453, 2601
CfoI GCGC 5 cut(s) 494, 499, 690, 2275, 2467
Cfr10I RCCGGY 2 cut(s) 2498, 2614
Cfr13I GGNCC 1 cut(s) 2184
ClaI ATCGAT 3 cut(s) 549, 1016, 2723
CseI GACGC 3 cut(s) 338, 988, 2866
Csp6I GTAC 3 cut(s) 409, 1075, 1332
CspCI CAANNNNNGTGG 2 cut(s) 1176, 1211
CviQI GTAC 3 cut(s) 409, 1075, 1332
DdeI CTNAG 7 cut(s) 74, 484, 1536, 1572, 1829, 2040, 3027
DinI GGCGCC 1 cut(s) 689
DraI TTTAAA 1 cut(s) 738
DraIII CACNNNGTG 2 cut(s) 445, 2561
DrdI GACNNNNNNGTC 1 cut(s) 1312
DseDI GACNNNNNNGTC 1 cut(s) 1312
EaeI YGGCCR 5 cut(s) 416, 759, 781, 2382, 2990
EagI CGGCCG 1 cut(s) 759
Eam1104I CTCTTC 4 cut(s) 969, 1250, 1404, 1592
EarI CTCTTC 4 cut(s) 969, 1250, 1404, 1592
EciI GGCGGA 3 cut(s) 570, 1688, 2485
Ecl136II GAGCTC 2 cut(s) 1706, 2599
EclXI CGGCCG 1 cut(s) 759
Eco130I CCWWGG 3 cut(s) 510, 1807, 2307
Eco147I AGGCCT 5 cut(s) 455, 1215, 1495, 1625, 1929
Eco24I GRGCYC 2 cut(s) 1708, 2601
Eco31I GGTCTC 1 cut(s) 741
Eco32I GATATC 1 cut(s) 2350
Eco47I GGWCC 1 cut(s) 2184
Eco47III AGCGCT 1 cut(s) 2466
Eco52I CGGCCG 1 cut(s) 759
Eco53kI GAGCTC 2 cut(s) 1706, 2599
Eco57I CTGAAG 2 cut(s) 266, 2077
Eco88I CYCGRG 1 cut(s) 1522
Eco91I GGTNACC 1 cut(s) 1372
EcoICRI GAGCTC 2 cut(s) 1706, 2599
EcoO109I RGGNCCY 1 cut(s) 2184
EcoO65I GGTNACC 1 cut(s) 1372
EcoRII CCWGG 2 cut(s) 1957, 2784
EcoRV GATATC 1 cut(s) 2350
EcoT14I CCWWGG 3 cut(s) 510, 1807, 2307
EcoT22I ATGCAT 1 cut(s) 1838
EcoT38I GRGCYC 2 cut(s) 1708, 2601
EgeI GGCGCC 1 cut(s) 689
EheI GGCGCC 1 cut(s) 689
ErhI CCWWGG 3 cut(s) 510, 1807, 2307
Esp3I CGTCTC 2 cut(s) 971, 1298
FaqI GGGAC 1 cut(s) 2492
FauI CCCGC 3 cut(s) 370, 2054, 2284
FbaI TGATCA 8 cut(s) 232, 826, 2013, 2077, 2355, 2472, 2544, 2637
FblI GTMKAC 3 cut(s) 5, 798, 2679
FokI GGATG 7 cut(s) 464, 555, 913, 1784, 2270, 2408, 2420
FriOI GRGCYC 2 cut(s) 1708, 2601
FspBI CTAG 4 cut(s) 776, 2231, 2558, 2808
GlaI GCGC 5 cut(s) 493, 498, 689, 2274, 2466
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 3 cut(s) 109, 1692, 1773
HaeII RGCGCY 2 cut(s) 691, 2468
HapII CCGG 5 cut(s) 758, 1208, 1479, 2499, 2615
HgaI GACGC 3 cut(s) 338, 988, 2866
HhaI GCGC 5 cut(s) 494, 499, 690, 2275, 2467
Hin1I GRCGYC 3 cut(s) 688, 980, 2877
Hin6I GCGC 5 cut(s) 492, 497, 688, 2273, 2465
HinP1I GCGC 5 cut(s) 492, 497, 688, 2273, 2465
HincII GTYRAC 3 cut(s) 1141, 1988, 2514
HindII GTYRAC 3 cut(s) 1141, 1988, 2514
HindIII AAGCTT 2 cut(s) 2201, 2813
HpaI GTTAAC 1 cut(s) 2514
HpaII CCGG 5 cut(s) 758, 1208, 1479, 2499, 2615
Hpy188I TCNGA 9 cut(s) 63, 214, 746, 900, 1470, 2300, 2347, 2637, 2837
Hpy99I CGWCG 1 cut(s) 2380
HpyCH4III ACNGT 6 cut(s) 202, 1324, 1985, 2389, 2452, 2532
HpyCH4IV ACGT 3 cut(s) 407, 1010, 1990
HpyF10VI GCNNNNNNNGC 9 cut(s) 75, 286, 687, 957, 994, 1003, 1274, 1833, 2495
HpyF3I CTNAG 7 cut(s) 74, 484, 1536, 1572, 1829, 2040, 3027
HpySE526I ACGT 3 cut(s) 407, 1010, 1990
Hsp92I GRCGYC 3 cut(s) 688, 980, 2877
HspAI GCGC 5 cut(s) 492, 497, 688, 2273, 2465
KasI GGCGCC 1 cut(s) 687
Kpn2I TCCGGA 1 cut(s) 1207
Ksp22I TGATCA 8 cut(s) 232, 826, 2013, 2077, 2355, 2472, 2544, 2637
KspAI GTTAAC 1 cut(s) 2514
LmnI GCTCC 5 cut(s) 128, 286, 1703, 1711, 2596
Lsp1109I GCAGC 9 cut(s) 33, 476, 481, 1137, 1165, 1836, 2474, 2877, 2990
LweI GCATC 4 cut(s) 891, 1757, 1823, 2260
MaeI CTAG 4 cut(s) 776, 2231, 2558, 2808
MaeII ACGT 3 cut(s) 407, 1010, 1990
MbiI CCGCTC 1 cut(s) 317
MfeI CAATTG 2 cut(s) 1188, 2994
MflI RGATCY 1 cut(s) 1945
MhlI GDGCHC 6 cut(s) 339, 528, 1708, 1733, 2566, 2601
MlsI TGGCCA 2 cut(s) 2384, 2992
MluNI TGGCCA 2 cut(s) 2384, 2992
Mly113I GGCGCC 1 cut(s) 688
MlyI GAGTC 3 cut(s) 378, 1225, 1537
MmeI TCCRAC 3 cut(s) 429, 898, 2467
Mox20I TGGCCA 2 cut(s) 2384, 2992
Mph1103I ATGCAT 1 cut(s) 1838
MroI TCCGGA 1 cut(s) 1207
MroXI GAANNNNTTC 2 cut(s) 857, 2831
MscI TGGCCA 2 cut(s) 2384, 2992
MseI TTAA 7 cut(s) 737, 1151, 1761, 1940, 2007, 2393, 2513
MslI CAYNNNNRTG 2 cut(s) 878, 2774
Msp20I TGGCCA 2 cut(s) 2384, 2992
MspA1I CMGCKG 2 cut(s) 2097, 2519
MspI CCGG 5 cut(s) 758, 1208, 1479, 2499, 2615
MspR9I CCNGG 3 cut(s) 1480, 1959, 2786
MteI GCGCNGCGC 1 cut(s) 495
MunI CAATTG 2 cut(s) 1188, 2994
Mva1269I GAATGC 2 cut(s) 2063, 2345
MvaI CCWGG 2 cut(s) 1959, 2786
MvnI CGCG 3 cut(s) 963, 1157, 1175
MwoI GCNNNNNNNGC 9 cut(s) 75, 286, 687, 957, 994, 1003, 1274, 1833, 2495
NarI GGCGCC 1 cut(s) 688
NciI CCSGG 1 cut(s) 1480
NcoI CCATGG 1 cut(s) 2307
NlaIV GGNNCC 3 cut(s) 689, 1398, 2660
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 6 cut(s) 842, 1228, 1372, 1604, 2248, 2878
NsiI ATGCAT 1 cut(s) 1838
NspI RCATGY 3 cut(s) 20, 1568, 2089
NspV TTCGAA 2 cut(s) 708, 1508
OliI CACNNNNGTG 2 cut(s) 878, 2774
PaeI GCATGC 1 cut(s) 20
PagI TCATGA 2 cut(s) 1453, 2601
PaqCI CACCTGC 1 cut(s) 2884
PasI CCCWGGG 1 cut(s) 1958
PceI AGGCCT 5 cut(s) 455, 1215, 1495, 1625, 1929
PciI ACATGT 1 cut(s) 2085
PctI GAATGC 2 cut(s) 2063, 2345
PdmI GAANNNNTTC 2 cut(s) 857, 2831
PfeI GAWTC 8 cut(s) 206, 342, 516, 803, 853, 1450, 1546, 2841
PflMI CCANNNNNTGG 3 cut(s) 1383, 1813, 2242
PleI GAGTC 3 cut(s) 378, 1225, 1536
PluTI GGCGCC 1 cut(s) 691
PpsI GAGTC 3 cut(s) 378, 1225, 1536
Ppu21I YACGTR 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 2184
PscI ACATGT 1 cut(s) 2085
Psp124BI GAGCTC 2 cut(s) 1708, 2601
Psp5II RGGWCCY 1 cut(s) 2184
Psp6I CCWGG 2 cut(s) 1957, 2784
PspEI GGTNACC 1 cut(s) 1372
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 1957, 2784
PspN4I GGNNCC 3 cut(s) 689, 1398, 2660
PspPI GGNCC 1 cut(s) 2184
PspPPI RGGWCCY 1 cut(s) 2184
PstI CTGCAG 1 cut(s) 2895
PstNI CAGNNNCTG 2 cut(s) 289, 2530
PsuI RGATCY 1 cut(s) 1945
PvuII CAGCTG 1 cut(s) 2519
RsaI GTAC 3 cut(s) 410, 1076, 1333
RsaNI GTAC 3 cut(s) 409, 1075, 1332
RseI CAYNNNNRTG 2 cut(s) 878, 2774
SacI GAGCTC 2 cut(s) 1708, 2601
SaqAI TTAA 7 cut(s) 737, 1151, 1761, 1940, 2007, 2393, 2513
Sau96I GGNCC 1 cut(s) 2184
SchI GAGTC 3 cut(s) 378, 1225, 1537
ScrFI CCNGG 3 cut(s) 1480, 1959, 2786
SduI GDGCHC 6 cut(s) 339, 528, 1708, 1733, 2566, 2601
SfaNI GCATC 4 cut(s) 891, 1757, 1823, 2260
SfcI CTRYAG 1 cut(s) 2891
SfoI GGCGCC 1 cut(s) 689
SfuI TTCGAA 2 cut(s) 708, 1508
SgrAI CRCCGGYG 1 cut(s) 2498
SinI GGWCC 1 cut(s) 2184
SmiMI CAYNNNNRTG 2 cut(s) 878, 2774
SmlI CTYRAG 5 cut(s) 386, 2069, 2670, 2816, 3050
SmoI CTYRAG 5 cut(s) 386, 2069, 2670, 2816, 3050
SphI GCATGC 1 cut(s) 20
SseBI AGGCCT 5 cut(s) 455, 1215, 1495, 1625, 1929
SspDI GGCGCC 1 cut(s) 687
SspI AATATT 1 cut(s) 705
SspMI CTAG 4 cut(s) 776, 2231, 2558, 2808
SstI GAGCTC 2 cut(s) 1708, 2601
StuI AGGCCT 5 cut(s) 455, 1215, 1495, 1625, 1929
StyD4I CCNGG 3 cut(s) 1478, 1957, 2784
StyI CCWWGG 3 cut(s) 510, 1807, 2307
TaaI ACNGT 6 cut(s) 202, 1324, 1985, 2389, 2452, 2532
TaiI ACGT 3 cut(s) 410, 1013, 1993
TauI GCSGC 8 cut(s) 194, 418, 684, 963, 1178, 1820, 1956, 2489
TfiI GAWTC 8 cut(s) 206, 342, 516, 803, 853, 1450, 1546, 2841
Tru1I TTAA 7 cut(s) 737, 1151, 1761, 1940, 2007, 2393, 2513
Tru9I TTAA 7 cut(s) 737, 1151, 1761, 1940, 2007, 2393, 2513
TscAI CASTG 5 cut(s) 1087, 2041, 2222, 2253, 2960
TseFI GTSAC 6 cut(s) 842, 1228, 1372, 1604, 2248, 2878
TseI GCWGC 9 cut(s) 46, 489, 494, 1125, 1178, 1824, 2462, 2890, 2978
Tsp45I GTSAC 6 cut(s) 842, 1228, 1372, 1604, 2248, 2878
TspGWI ACGGA 2 cut(s) 354, 1660
TspRI CASTG 5 cut(s) 1087, 2041, 2222, 2253, 2960
Van91I CCANNNNNTGG 3 cut(s) 1383, 1813, 2242
VneI GTGCAC 2 cut(s) 524, 1729
VpaK11BI GGWCC 1 cut(s) 2184
XapI RAATTY 3 cut(s) 1790, 1894, 2539
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 3 cut(s) 20, 1568, 2089
XcmI CCANNNNNNNNNTGG 1 cut(s) 1118
XmiI GTMKAC 3 cut(s) 5, 798, 2679
XmnI GAANNNNTTC 2 cut(s) 857, 2831
XspI CTAG 4 cut(s) 776, 2231, 2558, 2808
Zsp2I ATGCAT 1 cut(s) 1838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.