Rmu_sc0001949.1_g000015

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001949.1
Physical Location & Seq
Forward (+)
49497 .. 55639
6143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001949.1_g000015.1.cds

Sequence Viewer

Length: 2910 bp
atgaccagtgccattgtgcccgcatatttggggtgtctagttgtccctcttaccatacacagaaggagatggcgttcggcgtttgtcaccatttactgctctagagccttccagtcattcttcccgtcagtgtcagtgtcagacaacaagggtttcaaactagaccaaaaaaccctcactcggcttgttaaggttaaaagtcttgatcagctccaagagttgggaggggttaaaggagtagcatcagccctcaaaactgatgcagcgcatggagtttgcggtgacgctgacgatgttgcacagcgagttgaagcatttggttcgaatacatacaagatagcagcagccaagaggttcctccattttgtgtgggaagcatgccaagacctcacaatttttattcttacaggctgtgctgcactttcacttgctttgggcatcctagagcatggattaagagatggttggagtgatggtggaagcatatttctcgcagtcattctggtgatttcagtgtctgccataagcaattacaggcagcaaagagagtttgacaaattgtcaaaagtcggtagcaatctccaaattgaagctgtgagaaatggcaagagactgcagatttcaatattcgaaattgtggttggagatgtcatttgcttagagattggagatcaagttcctgccgatgggttgctcttgcagggatattcattggaagtagatgaatcaagcatgacaggggagagtgaccatgtcgaaatcaaccaaagccagaaccccttcttgttttccggcaccaaagtggttgaggggtatgcacagatgcttgtcacttccgtcggcatgaacacaacatggggcgaaatgatgagccatatcagcagtgatgcaagtgaacagacacctttacaagctcgcatccatgggctagcctcatcaataggtatagttggtttgctagtagctttgtcaaatctcatagtctcaaagatatactacttcaccggaaataccaaggacaaacatggcaagaaggagttcaatgggagcagaaccaaagttaatcgcataataatggccgtggttgggatggtaggaactgcagttacaattgttgtggctgcaattccagaaggtttaccagtagccatgacaattactctctgttatgctatgaagagaatgatggctgataaagcaatggttaggaaactctctgcttgcgagattatgggctctgctaccaccatttgcactgacaaaacaggaactctcacgatgaaccagatgaaggtggccaagttctggataggtgaaaagcccgtggaggaagtctactcatcaatttcgtcccgtcttctaattagcttgattcaagaaggggttgctatgaacacaaccggctgtgcttctaggcacatttcaggatctggatttgaattttcaggcagtcctactgaaaaagccattctttcatgggcatctctggagctgcatatggacatggagagattgaaaaacaattccgtcattcaagatgttgaagccttcaattcacacaggaaacgaagtgtggccacagttttgatgtggggaagatgtgtgtacaataacatccaaaagttcattcaattccaactcactgtcaatgttgcagctcttgtgatcaactttgtggcagcagtttcagcaagtaaggtgcccttaacagcagttcaattattgtgggtgaacttgattatggacacactcggtgctctggcctttgcgacagacaaacccacaaaagaactcttggagaatccacctgtgagaagaacggagcctctcatcaccaacatcatgtggaggaaccttctacctcaagctatgtaccagatagcagtagtattgaccttacgattcaggggtaacacaatctttggtgtagatgataaggtacaagataccttgatctttaacacgtttgttctctgccaggtcttcaatgaattcaacgcaagaaagcttgagaagaagaatgttttcaagggactgctcaccaacaaaatctttttggggatcattgcattaataattattctgcagcttgtgatggtggaacttctgaacaaatacgcagatacagagaggttgaattgggagcaatggggtgcatgtcttggaattgcggccatctcttggccactcggttggatgatcaccacagcagcctcagcaatgaggatgcacataggcaatctttacccaaaggaactatctggaattcttccccacaagaggagacaactcgtgcactacagcccagactcacccaacgcaacgttgccttcgatccagcctccagcgcgcacagcccacctcacccaacctcctcccgagtgcgcgtcttcatcaatcctagcagcagaccggcctccttccctgcacaatccagaccagccttgtccacaccttgcagcagctgctgcttcacagccgcatagcccaagcaagcagcagcttgcatcgatcccagcagcagctgcccagccagaccggcctctcctcccatcagctcaccaaacccagcggccaccgatcccagcagcctcgtcggtgacaccgatccctccgaccgatcccagcaacacgctcaccttgcacctcgcaccggcgacctaccatcccagtctcagcccaacctccagactacccaaggagctccaccgctgcagatacccccatctgcaaaccagcaacagaaagaagaagaacagaaggaggaagacgccaaaagaaaaaagaaaaaaagagaagggacggaaaaaaaaatccagcccactgttgaaaaaaaggaagcggcccatttttttttctcaagccaaaaacatctctacgcacgcttgcatcaacacgcgcgtgcgctag

Protein Analysis

969

Amino Acids

106.62

Weight (kDa)

9.63

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 794, 1699
AccB7I CCANNNNNTGG 3 cut(s) 220, 1305, 2181
AccI GTMKAC 1 cut(s) 1335
AccII CGCG 4 cut(s) 2350, 2387, 2899, 2901
AciI CCGC 7 cut(s) 21, 279, 2171, 2480, 2572, 2710, 2842
AclI AACGTT 1 cut(s) 2324
AclWI GGATC 7 cut(s) 1435, 2069, 2329, 2506, 2575, 2602, 2615
AcoI YGGCCR 6 cut(s) 1077, 1296, 1575, 2172, 2183, 2573
AcsI RAATTY 3 cut(s) 1439, 1991, 2265
AcyI GRCGYC 1 cut(s) 2771
AdeI CACNNNGTG 1 cut(s) 1754
AfaI GTAC 3 cut(s) 1607, 1874, 1941
AfiI CCNNNNNNNGG 9 cut(s) 180, 220, 686, 1086, 1291, 1305, 2181, 2280, 2653
AflIII ACRYGT 1 cut(s) 1962
AhdI GACNNNNNGTC 1 cut(s) 559
AjnI CCWGG 1 cut(s) 1977
AjuI GAANNNNNNNTTGG 4 cut(s) 624, 656, 1611, 1643
AleI CACNNNNGTG 2 cut(s) 800, 2900
AloI GAACNNNNNNTCC 4 cut(s) 58, 90, 660, 692
Alw21I GWGCWC 3 cut(s) 1759, 2298, 2706
Alw26I GTCTC 4 cut(s) 604, 988, 2278, 2678
Alw44I GTGCAC 1 cut(s) 2294
AlwI GGATC 7 cut(s) 1435, 2069, 2329, 2506, 2575, 2602, 2615
AlwNI CAGNNNCTG 5 cut(s) 518, 1430, 2465, 2468, 2525
Ama87I CYCGRG 1 cut(s) 2378
ApaLI GTGCAC 1 cut(s) 2294
ApoI RAATTY 3 cut(s) 1439, 1991, 2265
AseI ATTAAT 1 cut(s) 2072
Asp700I GAANNNNTTC 3 cut(s) 779, 1037, 2024
AspLEI GCGC 6 cut(s) 268, 2350, 2352, 2387, 2901, 2907
AspS9I GGNCC 1 cut(s) 2844
AsuII TTCGAA 2 cut(s) 323, 630
AsuNHI GCTAGC 1 cut(s) 928
AvaI CYCGRG 1 cut(s) 2378
BaeGI GKGCMC 3 cut(s) 21, 1704, 2298
BalI TGGCCA 3 cut(s) 1298, 1577, 2185
BanI GGYRCC 2 cut(s) 794, 1699
BanII GRGCYC 2 cut(s) 1238, 2706
BauI CACGAG 1 cut(s) 2291
BbsI GAAGAC 4 cut(s) 1349, 1975, 2382, 2774
Bbv12I GWGCWC 3 cut(s) 1759, 2298, 2706
BbvCI CCTCAGC 1 cut(s) 2215
BceAI ACGGC 1 cut(s) 1064
BcgI CGANNNNNNTGC 6 cut(s) 303, 337, 472, 506, 2577, 2611
BciT130I CCWGG 1 cut(s) 1979
BclI TGATCA 3 cut(s) 205, 1665, 2199
BcoDI GTCTC 4 cut(s) 604, 988, 2278, 2678
BfaI CTAG 9 cut(s) 38, 102, 161, 443, 929, 959, 1413, 2402, 2908
BfmI CTRYAG 5 cut(s) 614, 1101, 2084, 2299, 2713
BglI GCCNNNNNGGC 1 cut(s) 2539
Bme1390I CCNGG 1 cut(s) 1979
BmeRI GACNNNNNGTC 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 2378
BmgT120I GGNCC 1 cut(s) 2844
BmiI GGNNCC 5 cut(s) 356, 796, 1701, 1824, 1853
BmrFI CCNGG 1 cut(s) 1979
BmrI ACTGGG 1 cut(s) 2664
BmtI GCTAGC 1 cut(s) 932
BmuI ACTGGG 1 cut(s) 2664
BpiI GAAGAC 4 cut(s) 1349, 1975, 2382, 2774
BpmI CTGGAG 3 cut(s) 1508, 2328, 2671
Bpu10I CCTNAGC 1 cut(s) 2215
Bpu14I TTCGAA 2 cut(s) 323, 630
BpuEI CTTGAG 3 cut(s) 1848, 2030, 2844
Bsa29I ATCGAT 1 cut(s) 2510
BsaHI GRCGYC 1 cut(s) 2771
BsaJI CCNNGG 5 cut(s) 922, 1014, 1080, 1323, 2697
BsaWI WCCGGW 1 cut(s) 1004
BsaXI ACNNNNNCTCC 8 cut(s) 58, 88, 460, 490, 660, 690, 2356, 2386
Bsc4I CCNNNNNNNGG 9 cut(s) 180, 220, 686, 1086, 1291, 1305, 2181, 2280, 2653
Bse118I RCCGGY 4 cut(s) 1400, 2412, 2538, 2653
Bse1I ACTGG 4 cut(s) 6, 112, 1142, 2670
Bse3DI GCAATG 4 cut(s) 1206, 2064, 2153, 2226
BseBI CCWGG 1 cut(s) 1979
BseCI ATCGAT 1 cut(s) 2510
BseDI CCNNGG 5 cut(s) 922, 1014, 1080, 1323, 2697
BseGI GGATG 7 cut(s) 438, 918, 1095, 1614, 2202, 2232, 2665
BseLI CCNNNNNNNGG 9 cut(s) 180, 220, 686, 1086, 1291, 1305, 2181, 2280, 2653
BseMI GCAATG 4 cut(s) 1206, 2064, 2153, 2226
BseMII CTCAG 2 cut(s) 2229, 2689
BseNI ACTGG 4 cut(s) 6, 112, 1142, 2670
BsePI GCGCGC 1 cut(s) 2348
BseRI GAGGAG 3 cut(s) 2296, 2364, 2537
BseSI GKGCMC 3 cut(s) 21, 1704, 2298
BseYI CCCAGC 5 cut(s) 2515, 2529, 2568, 2584, 2624
BsgI GTGCAG 2 cut(s) 402, 2411
Bsh1236I CGCG 4 cut(s) 2350, 2387, 2899, 2901
Bsh1285I CGRYCG 1 cut(s) 2619
BshNI GGYRCC 2 cut(s) 794, 1699
BshVI ATCGAT 1 cut(s) 2510
BsiEI CGRYCG 1 cut(s) 2619
BsiHKAI GWGCWC 3 cut(s) 1759, 2298, 2706
BsiHKCI CYCGRG 1 cut(s) 2378
BsiSI CCGG 6 cut(s) 792, 1005, 1401, 2413, 2539, 2654
BslFI GGGAC 4 cut(s) 29, 1336, 2046, 2814
BslI CCNNNNNNNGG 9 cut(s) 180, 220, 686, 1086, 1291, 1305, 2181, 2280, 2653
BsmAI GTCTC 4 cut(s) 604, 988, 2278, 2678
BsmFI GGGAC 4 cut(s) 29, 1336, 2046, 2814
BsoBI CYCGRG 1 cut(s) 2378
Bsp119I TTCGAA 2 cut(s) 323, 630
Bsp1286I GDGCHC 6 cut(s) 21, 1238, 1704, 1759, 2298, 2706
Bsp1407I TGTACA 1 cut(s) 1605
Bsp19I CCATGG 1 cut(s) 922
BspACI CCGC 7 cut(s) 21, 279, 2171, 2480, 2572, 2710, 2842
BspCNI CTCAG 2 cut(s) 2228, 2688
BspDI ATCGAT 1 cut(s) 2510
BspFNI CGCG 4 cut(s) 2350, 2387, 2899, 2901
BspLI GGNNCC 5 cut(s) 356, 796, 1701, 1824, 1853
BspMAI CTGCAG 4 cut(s) 618, 1105, 2088, 2717
BspOI GCTAGC 1 cut(s) 932
BspPI GGATC 7 cut(s) 1435, 2069, 2329, 2506, 2575, 2602, 2615
BspT104I TTCGAA 2 cut(s) 323, 630
BspT107I GGYRCC 2 cut(s) 794, 1699
BsrDI GCAATG 4 cut(s) 1206, 2064, 2153, 2226
BsrFI RCCGGY 4 cut(s) 1400, 2412, 2538, 2653
BsrGI TGTACA 1 cut(s) 1605
BsrI ACTGG 4 cut(s) 6, 112, 1142, 2670
BssAI RCCGGY 4 cut(s) 1400, 2412, 2538, 2653
BssECI CCNNGG 5 cut(s) 922, 1014, 1080, 1323, 2697
BssHII GCGCGC 1 cut(s) 2348
BssNI GRCGYC 1 cut(s) 2771
BssSI CACGAG 1 cut(s) 2291
BssT1I CCWWGG 3 cut(s) 922, 1014, 2697
Bst2BI CACGAG 1 cut(s) 2291
Bst2UI CCWGG 1 cut(s) 1979
Bst4CI ACNGT 3 cut(s) 1582, 1645, 2826
Bst6I CTCTTC 1 cut(s) 1172
BstACI GRCGYC 1 cut(s) 2771
BstAPI GCANNNNNTGC 3 cut(s) 2465, 2468, 2525
BstAUI TGTACA 1 cut(s) 1605
BstBI TTCGAA 2 cut(s) 323, 630
BstDEI CTNAG 3 cut(s) 658, 2215, 2675
BstDSI CCRYGG 3 cut(s) 922, 1080, 1323
BstF5I GGATG 7 cut(s) 438, 918, 1095, 1614, 2202, 2232, 2665
BstFNI CGCG 4 cut(s) 2350, 2387, 2899, 2901
BstHHI GCGC 6 cut(s) 268, 2350, 2352, 2387, 2901, 2907
BstMAI GTCTC 4 cut(s) 604, 988, 2278, 2678
BstMCI CGRYCG 1 cut(s) 2619
BstNI CCWGG 1 cut(s) 1979
BstNSI RCATGY 2 cut(s) 381, 2160
BstSCI CCNGG 1 cut(s) 1977
BstSFI CTRYAG 5 cut(s) 614, 1101, 2084, 2299, 2713
BstSLI GKGCMC 3 cut(s) 21, 1704, 2298
BstUI CGCG 4 cut(s) 2350, 2387, 2899, 2901
BstV2I GAAGAC 4 cut(s) 1349, 1975, 2382, 2774
BstX2I RGATCY 1 cut(s) 1427
BstXI CCANNNNNNTGG 1 cut(s) 2193
BstYI RGATCY 1 cut(s) 1427
Bsu15I ATCGAT 1 cut(s) 2510
BsuTUI ATCGAT 1 cut(s) 2510
BtgI CCRYGG 3 cut(s) 922, 1080, 1323
BtsCI GGATG 7 cut(s) 438, 918, 1095, 1614, 2202, 2232, 2665
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 8 cut(s) 13, 135, 141, 519, 889, 1254, 1641, 2822
CaiI CAGNNNCTG 5 cut(s) 518, 1430, 2465, 2468, 2525
CfoI GCGC 6 cut(s) 268, 2350, 2352, 2387, 2901, 2907
Cfr10I RCCGGY 4 cut(s) 1400, 2412, 2538, 2653
Cfr13I GGNCC 1 cut(s) 2844
ClaI ATCGAT 1 cut(s) 2510
CseI GACGC 3 cut(s) 293, 2376, 2779
Csp6I GTAC 3 cut(s) 1606, 1873, 1940
CspCI CAANNNNNGTGG 4 cut(s) 1098, 1133, 1706, 1741
CviQI GTAC 3 cut(s) 1606, 1873, 1940
DdeI CTNAG 3 cut(s) 658, 2215, 2675
DraIII CACNNNGTG 1 cut(s) 1754
DriI GACNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 6 cut(s) 1077, 1296, 1575, 2172, 2183, 2573
Eam1104I CTCTTC 1 cut(s) 1172
Eam1105I GACNNNNNGTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 1172
Ecl136II GAGCTC 1 cut(s) 2704
Eco130I CCWWGG 3 cut(s) 922, 1014, 2697
Eco24I GRGCYC 2 cut(s) 1238, 2706
Eco53kI GAGCTC 1 cut(s) 2704
Eco88I CYCGRG 1 cut(s) 2378
EcoICRI GAGCTC 1 cut(s) 2704
EcoRI GAATTC 2 cut(s) 1991, 2265
EcoRII CCWGG 1 cut(s) 1977
EcoT14I CCWWGG 3 cut(s) 922, 1014, 2697
EcoT38I GRGCYC 2 cut(s) 1238, 2706
ErhI CCWWGG 3 cut(s) 922, 1014, 2697
FalI AAGNNNNNCTT 4 cut(s) 1455, 1487, 1688, 1720
FaqI GGGAC 4 cut(s) 29, 1336, 2046, 2814
FauI CCCGC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 1497
FbaI TGATCA 3 cut(s) 205, 1665, 2199
FblI GTMKAC 1 cut(s) 1335
FokI GGATG 7 cut(s) 425, 905, 1102, 1601, 2209, 2239, 2652
FriOI GRGCYC 2 cut(s) 1238, 2706
FspBI CTAG 9 cut(s) 38, 102, 161, 443, 929, 959, 1413, 2402, 2908
GlaI GCGC 6 cut(s) 267, 2349, 2351, 2386, 2900, 2906
GsaI CCCAGC 5 cut(s) 2519, 2533, 2572, 2588, 2628
GsuI CTGGAG 3 cut(s) 1508, 2328, 2671
HapII CCGG 6 cut(s) 792, 1005, 1401, 2413, 2539, 2654
HgaI GACGC 3 cut(s) 293, 2376, 2779
HhaI GCGC 6 cut(s) 268, 2350, 2352, 2387, 2901, 2907
Hin1I GRCGYC 1 cut(s) 2771
Hin6I GCGC 6 cut(s) 266, 2348, 2350, 2385, 2899, 2905
HinP1I GCGC 6 cut(s) 266, 2348, 2350, 2385, 2899, 2905
HindIII AAGCTT 1 cut(s) 2006
HinfI GANTC 5 cut(s) 725, 1372, 1801, 1902, 2309
HpaII CCGG 6 cut(s) 792, 1005, 1401, 2413, 2539, 2654
Hpy166II GTNNAC 7 cut(s) 896, 1139, 1336, 1606, 1732, 2296, 2450
Hpy188I TCNGA 3 cut(s) 142, 2109, 2616
Hpy8I GTNNAC 7 cut(s) 896, 1139, 1336, 1606, 1732, 2296, 2450
Hpy99I CGWCG 2 cut(s) 842, 2599
HpyCH4III ACNGT 3 cut(s) 1582, 1645, 2826
HpyCH4IV ACGT 2 cut(s) 1964, 2324
HpyF3I CTNAG 3 cut(s) 658, 2215, 2675
HpySE526I ACGT 2 cut(s) 1964, 2324
Hsp92I GRCGYC 1 cut(s) 2771
HspAI GCGC 6 cut(s) 266, 2348, 2350, 2385, 2899, 2905
Ksp22I TGATCA 3 cut(s) 205, 1665, 2199
LmnI GCTCC 7 cut(s) 216, 1047, 1489, 1822, 2143, 2701, 2709
MaeI CTAG 9 cut(s) 38, 102, 161, 443, 929, 959, 1413, 2402, 2908
MaeII ACGT 2 cut(s) 1964, 2324
MaeIII GTNAC 7 cut(s) 85, 281, 746, 829, 1105, 1910, 2599
MfeI CAATTG 1 cut(s) 1110
MflI RGATCY 1 cut(s) 1427
MhlI GDGCHC 6 cut(s) 21, 1238, 1704, 1759, 2298, 2706
MlsI TGGCCA 3 cut(s) 1298, 1577, 2185
MluNI TGGCCA 3 cut(s) 1298, 1577, 2185
MlyI GAGTC 1 cut(s) 2303
MmeI TCCRAC 5 cut(s) 446, 622, 1660, 2174, 2639
Mox20I TGGCCA 3 cut(s) 1298, 1577, 2185
MroXI GAANNNNTTC 3 cut(s) 779, 1037, 2024
MscI TGGCCA 3 cut(s) 1298, 1577, 2185
MseI TTAA 8 cut(s) 189, 195, 231, 455, 1062, 1706, 1959, 2072
MslI CAYNNNNRTG 4 cut(s) 503, 800, 1073, 2900
Msp20I TGGCCA 3 cut(s) 1298, 1577, 2185
MspA1I CMGCKG 4 cut(s) 2465, 2525, 2572, 2712
MspI CCGG 6 cut(s) 792, 1005, 1401, 2413, 2539, 2654
MspR9I CCNGG 1 cut(s) 1979
MunI CAATTG 1 cut(s) 1110
MvaI CCWGG 1 cut(s) 1979
MvnI CGCG 4 cut(s) 2350, 2387, 2899, 2901
NcoI CCATGG 1 cut(s) 922
NdeI CATATG 1 cut(s) 1497
NheI GCTAGC 1 cut(s) 928
NlaIV GGNNCC 5 cut(s) 356, 796, 1701, 1824, 1853
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 5 cut(s) 85, 281, 746, 829, 2599
NspI RCATGY 2 cut(s) 381, 2160
NspV TTCGAA 2 cut(s) 323, 630
OliI CACNNNNGTG 2 cut(s) 800, 2900
PaeI GCATGC 1 cut(s) 381
PauI GCGCGC 1 cut(s) 2348
PcsI WCGNNNNNNNCGW 2 cut(s) 2330, 2603
PdmI GAANNNNTTC 3 cut(s) 779, 1037, 2024
PfeI GAWTC 4 cut(s) 725, 1372, 1801, 1902
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 3 cut(s) 220, 1305, 2181
PleI GAGTC 1 cut(s) 2303
PpsI GAGTC 1 cut(s) 2303
PshBI ATTAAT 1 cut(s) 2072
Psp124BI GAGCTC 1 cut(s) 2706
Psp1406I AACGTT 1 cut(s) 2324
Psp6I CCWGG 1 cut(s) 1977
PspFI CCCAGC 5 cut(s) 2515, 2529, 2568, 2584, 2624
PspGI CCWGG 1 cut(s) 1977
PspN4I GGNNCC 5 cut(s) 356, 796, 1701, 1824, 1853
PspPI GGNCC 1 cut(s) 2844
PsrI GAACNNNNNNTAC 2 cut(s) 1090, 1122
PstI CTGCAG 4 cut(s) 618, 1105, 2088, 2717
PstNI CAGNNNCTG 5 cut(s) 518, 1430, 2465, 2468, 2525
PsuI RGATCY 1 cut(s) 1427
PsyI GACNNNGTC 1 cut(s) 752
PteI GCGCGC 1 cut(s) 2348
PvuII CAGCTG 2 cut(s) 2465, 2525
RsaI GTAC 3 cut(s) 1607, 1874, 1941
RsaNI GTAC 3 cut(s) 1606, 1873, 1940
RseI CAYNNNNRTG 4 cut(s) 503, 800, 1073, 2900
SacI GAGCTC 1 cut(s) 2706
SaqAI TTAA 8 cut(s) 189, 195, 231, 455, 1062, 1706, 1959, 2072
Sau96I GGNCC 1 cut(s) 2844
SchI GAGTC 1 cut(s) 2303
ScrFI CCNGG 1 cut(s) 1979
SduI GDGCHC 6 cut(s) 21, 1238, 1704, 1759, 2298, 2706
SfcI CTRYAG 5 cut(s) 614, 1101, 2084, 2299, 2713
SfuI TTCGAA 2 cut(s) 323, 630
SgrAI CRCCGGYG 1 cut(s) 2653
SmiMI CAYNNNNRTG 4 cut(s) 503, 800, 1073, 2900
SmlI CTYRAG 3 cut(s) 1863, 2009, 2859
SmoI CTYRAG 3 cut(s) 1863, 2009, 2859
SphI GCATGC 1 cut(s) 381
SsiI CCGC 7 cut(s) 21, 279, 2171, 2480, 2572, 2710, 2842
SspI AATATT 1 cut(s) 627
SspMI CTAG 9 cut(s) 38, 102, 161, 443, 929, 959, 1413, 2402, 2908
SstI GAGCTC 1 cut(s) 2706
StyD4I CCNGG 1 cut(s) 1977
StyI CCWWGG 3 cut(s) 922, 1014, 2697
TaaI ACNGT 3 cut(s) 1582, 1645, 2826
TaiI ACGT 2 cut(s) 1967, 2327
TaqI TCGA 5 cut(s) 323, 630, 756, 2333, 2510
TaqII GACCGA 1 cut(s) 2633
TatI WGTACW 1 cut(s) 1605
TauI GCSGC 4 cut(s) 2174, 2482, 2575, 2845
TfiI GAWTC 4 cut(s) 725, 1372, 1801, 1902
Tru1I TTAA 8 cut(s) 189, 195, 231, 455, 1062, 1706, 1959, 2072
Tru9I TTAA 8 cut(s) 189, 195, 231, 455, 1062, 1706, 1959, 2072
TscAI CASTG 8 cut(s) 13, 135, 141, 519, 889, 1261, 1648, 2829
TseFI GTSAC 5 cut(s) 85, 281, 746, 829, 2599
Tsp45I GTSAC 5 cut(s) 85, 281, 746, 829, 2599
TspGWI ACGGA 4 cut(s) 826, 1516, 1835, 2818
TspRI CASTG 8 cut(s) 13, 135, 141, 519, 889, 1261, 1648, 2829
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 3 cut(s) 220, 1305, 2181
VneI GTGCAC 1 cut(s) 2294
VspI ATTAAT 1 cut(s) 2072
XapI RAATTY 3 cut(s) 1439, 1991, 2265
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 2 cut(s) 381, 2160
XmiI GTMKAC 1 cut(s) 1335
XmnI GAANNNNTTC 3 cut(s) 779, 1037, 2024
XspI CTAG 9 cut(s) 38, 102, 161, 443, 929, 959, 1413, 2402, 2908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.