Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

34192256 .. 34206453

Gene Structure 14198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0316700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGAGGAGAGAGCAAGATGCTTCACATTTCTCGGCGTCGGAGCTCTGCTGGGCTCCGTCTCCACCTTTCTTCTGCTCAAGCTTCTACCAAGAAGGATTGCAAACCACTGTGATAAAAAGGCACTCCAAATGAATGATATTAATGGTAAAGGGTTGGCATCTGAGACACCTACAAATTGCAGTGCAGTTACTGGGAGCGGAAATAGCAAGTTAGCTGGTGTAGACCTTCTAAATGATGAGATAGTCTGTGAACAACTAACAAGAAACATTCAATTCTTTGGACTTGAACCTCAACAAAAAGTGACTGCTTCCTATGTTGTGGTCATTGGTCTTGGAGGAGTTGGAAGTCATGCTGCATCAATGCTTTTGCGGTCGGGGGTTGGCAGGCTTCTCCTTGTGGACTTTGATCAGGTATCAGTTTCATCACTTAATCGACATGCTGTTGCAACAAGAGCTGACGTTGGTATCCCAAAAGCCCAGTGTCTGAAAGATCATTTCTTATCTATCTTCCCAGAGTGTCACATAGAAGCAAAGGTCCTGTTATACAATGCATCGTCTGAGGAAGAGATTCTTTCAGGTCATCCTGATTTTGTTTTGGACTGCATTGACAACATTGATACAAAGGTGGCACTTCTTGCGGCATGTGTACGTAGGGGTTTAAAGGTCCTATCAGCCACAGGAGCTGGTGCTAGAGCTGACCCGACAAGAATACGCATTGCTGATTTAAGACAATCGACAAATGACCCATTATCTCGAGCTGTGAGACACCGTTTGAAGAGAGAGTATGGCATTGAAGGTGGCATTCCTGTTGTATTTTCATTGGAGAAACCTAAGGCAAAGCTTCTTCCATTTAAAGGACAAAGTGGAGAAGAAGAAAATCCTTCAGATTACCAGATAGTACCAGGGTTTAGGGTTCGCATAATACCTGTCCTTGGTACCATTCCTGCAATATTTGGCCAAGTGATGGCCTCCTATGTGTTGACACAACTTGCAGAATTGCAAGTTCAATTGGAACCTGTGATAAACTTGGACATTGACCATTACCGGATGCTTCACCAACGTCTTATTGAGCATGAGGAGTCATTGTATGGCACTGCCTTGCATGTCCAGGTAGATGTTGAAGAAGTGATGTATGTTGCAAAAGAGTTGTGGCATGGAAGAAGTGCTAGAGAGCCAATTGCTAAAGATGTAGGACGTAGCATGTGGCGATCGGTGAATGAATTAATGCTTTTGAGGTGGGACCGGGAAAAGCCGGCATCTGTGTCCAACTTAATTCTCTTGAAATTTAAAGAGGCAGATGAACATGAATCCAGGACTCTTGAAGATATAAAAGAAGAGGAACCAGAATTTTTTGTTCGAGTTACATCTGTTCTGAAGCGAGCCGAACTAGAATTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

467

Amino Acids

51.82

Weight (kDa)

6.15

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ThiF	PF00899	87 - 342	2.5e-44	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	935
AccB1I	GGYRCC	1 cut(s)	935
AccB7I	CCANNNNNTGG	1 cut(s)	964
AccBSI	CCGCTC	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	3 cut(s)	198, 370, 638
AcoI	YGGCCR	1 cut(s)	955
AcsI	RAATTY	3 cut(s)	1283, 1346, 1391
AcuI	CTGAAG	2 cut(s)	867, 1394
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	3 cut(s)	648, 900, 937
AfiI	CCNNNNNNNGG	3 cut(s)	854, 932, 964
AgsI	TTSAA	8 cut(s)	272, 287, 775, 794, 1007, 1121, 1282, 1322
AjnI	CCWGG	3 cut(s)	901, 1107, 1310
AjuI	GAANNNNNNNTTGG	1 cut(s)	1377
AluBI	AGCT	8 cut(s)	44, 82, 215, 455, 683, 695, 758, 841
AluI	AGCT	8 cut(s)	44, 82, 215, 455, 683, 695, 758, 841
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	3 cut(s)	64, 158, 757
AlwNI	CAGNNNCTG	3 cut(s)	191, 484, 683
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	2 cut(s)	955, 966
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	3 cut(s)	1283, 1346, 1391
AseI	ATTAAT	2 cut(s)	141, 1223
Asp700I	GAANNNNTTC	1 cut(s)	567
Asp718I	GGTACC	1 cut(s)	935
AspS9I	GGNCC	3 cut(s)	535, 664, 1240
AsuC2I	CCSGG	1 cut(s)	1244
AsuHPI	GGTGA	2 cut(s)	1046, 1225
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	3 cut(s)	535, 664, 1240
AxyI	CCTNAGG	1 cut(s)	831
BaeI	ACNNNNGTAYC	4 cut(s)	448, 481, 609, 642
BalI	TGGCCA	1 cut(s)	957
BanI	GGYRCC	1 cut(s)	935
BanII	GRGCYC	2 cut(s)	46, 56
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	1 cut(s)	958
BciT130I	CCWGG	3 cut(s)	903, 1109, 1312
BciVI	GTATCC	1 cut(s)	476
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	1244
BcoDI	GTCTC	3 cut(s)	64, 158, 757
BfaI	CTAG	3 cut(s)	690, 1167, 1388
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	2 cut(s)	354, 639
BlsI	GCNGC	2 cut(s)	355, 640
Bme1390I	CCNGG	4 cut(s)	903, 1109, 1244, 1312
Bme18I	GGWCC	3 cut(s)	535, 664, 1240
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	3 cut(s)	535, 664, 1240
BmiI	GGNNCC	5 cut(s)	55, 937, 1014, 1241, 1341
BmrFI	CCNGG	4 cut(s)	903, 1109, 1244, 1312
BmrI	ACTGGG	2 cut(s)	201, 472
BmsI	GCATC	6 cut(s)	8, 167, 365, 560, 1038, 1265
BmuI	ACTGGG	2 cut(s)	201, 472
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	1244
BsaAI	YACGTR	1 cut(s)	650
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	902, 931
BsaWI	WCCGGW	1 cut(s)	1044
BsaXI	ACNNNNNCTCC	2 cut(s)	1070, 1100
Bsc4I	CCNNNNNNNGG	3 cut(s)	854, 932, 964
Bse118I	RCCGGY	1 cut(s)	1252
Bse1I	ACTGG	2 cut(s)	196, 478
Bse21I	CCTNAGG	1 cut(s)	831
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	903, 1109, 1312
BseDI	CCNNGG	2 cut(s)	902, 931
BseGI	GGATG	2 cut(s)	580, 1053
BseLI	CCNNNNNNNGG	3 cut(s)	854, 932, 964
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	153, 549
BseNI	ACTGG	2 cut(s)	196, 478
BseRI	GAGGAG	3 cut(s)	20, 351, 1091
BseXI	GCAGC	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	204
Bsh1285I	CGRYCG	2 cut(s)	374, 1211
BshFI	GGCC	2 cut(s)	957, 968
BshNI	GGYRCC	1 cut(s)	935
BsiEI	CGRYCG	2 cut(s)	374, 1211
BsiHKAI	GWGCWC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	1045, 1243, 1253
BslFI	GGGAC	1 cut(s)	1253
BslI	CCNNNNNNNGG	3 cut(s)	854, 932, 964
BsmAI	GTCTC	3 cut(s)	64, 158, 757
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	1253
BsmI	GAATGC	1 cut(s)	801
BsnI	GGCC	2 cut(s)	957, 968
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	46, 56
Bsp143I	GATC	3 cut(s)	406, 490, 1208
BspACI	CCGC	3 cut(s)	198, 370, 638
BspANI	GGCC	2 cut(s)	957, 968
BspCNI	CTCAG	2 cut(s)	154, 550
BspLI	GGNNCC	5 cut(s)	55, 937, 1014, 1241, 1341
BspT107I	GGYRCC	1 cut(s)	935
BsrBI	CCGCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	1252
BsrI	ACTGG	2 cut(s)	196, 478
BssAI	RCCGGY	1 cut(s)	1252
BssECI	CCNNGG	2 cut(s)	902, 931
BssMI	GATC	3 cut(s)	406, 490, 1208
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	3 cut(s)	903, 1109, 1312
Bst4CI	ACNGT	2 cut(s)	110, 770
Bst6I	CTCTTC	3 cut(s)	558, 770, 1329
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstBAI	YACGTR	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	386, 1254, 1380
BstDEI	CTNAG	3 cut(s)	162, 558, 831
BstF5I	GGATG	2 cut(s)	580, 1053
BstKTI	GATC	3 cut(s)	409, 493, 1211
BstMAI	GTCTC	3 cut(s)	64, 158, 757
BstMBI	GATC	3 cut(s)	406, 490, 1208
BstMCI	CGRYCG	2 cut(s)	374, 1211
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 452, 635, 680
BstNI	CCWGG	3 cut(s)	903, 1109, 1312
BstNSI	RCATGY	4 cut(s)	440, 645, 1106, 1204
BstSCI	CCNGG	4 cut(s)	901, 1107, 1242, 1310
BstSNI	TACGTA	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	831
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	957, 968
BtsCI	GGATG	2 cut(s)	580, 1053
BtsI	GCAGTG	2 cut(s)	187, 1092
BtsIMutI	CAGTG	4 cut(s)	106, 187, 485, 1092
Cac8I	GCNNGC	3 cut(s)	386, 1254, 1380
CaiI	CAGNNNCTG	3 cut(s)	191, 484, 683
Cfr10I	RCCGGY	1 cut(s)	1252
Cfr13I	GGNCC	3 cut(s)	535, 664, 1240
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	647, 899, 936
CviAII	CATG	8 cut(s)	350, 437, 642, 1073, 1103, 1154, 1201, 1304
CviQI	GTAC	3 cut(s)	647, 899, 936
DdeI	CTNAG	3 cut(s)	162, 558, 831
DpnI	GATC	3 cut(s)	408, 492, 1210
DpnII	GATC	3 cut(s)	406, 490, 1208
DraI	TTTAAA	3 cut(s)	660, 853, 1288
EaeI	YGGCCR	1 cut(s)	955
Eam1104I	CTCTTC	3 cut(s)	558, 770, 1329
EarI	CTCTTC	3 cut(s)	558, 770, 1329
Ecl136II	GAGCTC	1 cut(s)	44
Eco105I	TACGTA	1 cut(s)	650
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	2 cut(s)	46, 56
Eco47I	GGWCC	3 cut(s)	535, 664, 1240
Eco53kI	GAGCTC	1 cut(s)	44
Eco57I	CTGAAG	2 cut(s)	867, 1394
Eco81I	CCTNAGG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	44
EcoO109I	RGGNCCY	2 cut(s)	535, 664
EcoRII	CCWGG	3 cut(s)	901, 1107, 1310
EcoT14I	CCWWGG	1 cut(s)	931
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	2 cut(s)	46, 56
ErhI	CCWWGG	1 cut(s)	931
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	8 cut(s)	353, 440, 645, 1076, 1106, 1157, 1204, 1307
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	1253
FatI	CATG	8 cut(s)	349, 436, 641, 1072, 1102, 1153, 1200, 1303
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	354, 639
FokI	GGATG	2 cut(s)	567, 1060
FriOI	GRGCYC	2 cut(s)	46, 56
Fsp4HI	GCNGC	2 cut(s)	354, 639
FspBI	CTAG	3 cut(s)	690, 1167, 1388
GluI	GCNGC	2 cut(s)	354, 639
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	957, 968
HapII	CCGG	3 cut(s)	1045, 1243, 1253
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	8 cut(s)	353, 440, 645, 1076, 1106, 1157, 1204, 1307
HincII	GTYRAC	1 cut(s)	981
HindII	GTYRAC	1 cut(s)	981
HindIII	AAGCTT	2 cut(s)	80, 839
HinfI	GANTC	4 cut(s)	568, 1079, 1307, 1315
HpaII	CCGG	3 cut(s)	1045, 1243, 1253
HphI	GGTGA	2 cut(s)	1046, 1225
Hpy166II	GTNNAC	5 cut(s)	223, 251, 400, 647, 981
Hpy188I	TCNGA	6 cut(s)	41, 163, 486, 559, 886, 1374
Hpy188III	TCNNGA	4 cut(s)	584, 753, 1279, 1319
Hpy8I	GTNNAC	5 cut(s)	223, 251, 400, 647, 981
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	87, 236, 788, 891
HpyCH4III	ACNGT	2 cut(s)	110, 770
HpyCH4IV	ACGT	4 cut(s)	459, 649, 1060, 1195
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 452, 635, 680
HpyF3I	CTNAG	3 cut(s)	162, 558, 831
HpySE526I	ACGT	4 cut(s)	459, 649, 1060, 1195
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	8 cut(s)	353, 440, 645, 1076, 1106, 1157, 1204, 1307
KpnI	GGTACC	1 cut(s)	939
KroI	GCCGGC	1 cut(s)	1252
KroNI	GCCGGC	1 cut(s)	1254
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	406, 490, 1208
LmnI	GCTCC	4 cut(s)	41, 59, 195, 680
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	6 cut(s)	8, 167, 365, 560, 1038, 1265
MaeI	CTAG	3 cut(s)	690, 1167, 1388
MaeII	ACGT	4 cut(s)	459, 649, 1060, 1195
MaeIII	GTNAC	4 cut(s)	187, 301, 518, 1360
MalI	GATC	3 cut(s)	408, 492, 1210
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	3 cut(s)	406, 490, 1208
MfeI	CAATTG	2 cut(s)	1007, 1176
MhlI	GDGCHC	2 cut(s)	46, 56
MlsI	TGGCCA	1 cut(s)	957
MluNI	TGGCCA	1 cut(s)	957
MlyI	GAGTC	2 cut(s)	1088, 1309
MmeI	TCCRAC	3 cut(s)	19, 322, 1290
MnlI	CCTC	8 cut(s)	300, 329, 553, 979, 1069, 1227, 1285, 1330
Mox20I	TGGCCA	1 cut(s)	957
Mph1103I	ATGCAT	1 cut(s)	553
MroNI	GCCGGC	1 cut(s)	1252
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	957
MseI	TTAA	8 cut(s)	141, 429, 659, 725, 852, 1223, 1271, 1287
Msp20I	TGGCCA	1 cut(s)	957
MspI	CCGG	3 cut(s)	1045, 1243, 1253
MspR9I	CCNGG	4 cut(s)	903, 1109, 1244, 1312
MunI	CAATTG	2 cut(s)	1007, 1176
Mva1269I	GAATGC	1 cut(s)	801
MvaI	CCWGG	3 cut(s)	903, 1109, 1312
MwoI	GCNNNNNNNGC	4 cut(s)	204, 452, 635, 680
NaeI	GCCGGC	1 cut(s)	1254
NciI	CCSGG	1 cut(s)	1244
NdeII	GATC	3 cut(s)	406, 490, 1208
NgoMIV	GCCGGC	1 cut(s)	1252
NlaIII	CATG	8 cut(s)	353, 440, 645, 1076, 1106, 1157, 1204, 1307
NlaIV	GGNNCC	5 cut(s)	55, 937, 1014, 1241, 1341
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	301, 518
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	4 cut(s)	440, 645, 1106, 1204
PaeR7I	CTCGAG	1 cut(s)	753
PctI	GAATGC	1 cut(s)	801
PdiI	GCCGGC	1 cut(s)	1254
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	568, 1307
PflMI	CCANNNNNTGG	1 cut(s)	964
PfoI	TCCNGGA	1 cut(s)	1310
PkrI	GCNGC	2 cut(s)	355, 640
Ple19I	CGATCG	1 cut(s)	1211
PleI	GAGTC	2 cut(s)	1087, 1309
PpsI	GAGTC	2 cut(s)	1087, 1309
Ppu21I	YACGTR	1 cut(s)	650
PpuMI	RGGWCCY	2 cut(s)	535, 664
PshBI	ATTAAT	2 cut(s)	141, 1223
Psp124BI	GAGCTC	1 cut(s)	46
Psp5II	RGGWCCY	2 cut(s)	535, 664
Psp6I	CCWGG	3 cut(s)	901, 1107, 1310
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	3 cut(s)	901, 1107, 1310
PspN4I	GGNNCC	5 cut(s)	55, 937, 1014, 1241, 1341
PspPI	GGNCC	3 cut(s)	535, 664, 1240
PspPPI	RGGWCCY	2 cut(s)	535, 664
PstNI	CAGNNNCTG	3 cut(s)	191, 484, 683
PvuI	CGATCG	1 cut(s)	1211
RsaI	GTAC	3 cut(s)	648, 900, 937
RsaNI	GTAC	3 cut(s)	647, 899, 936
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	8 cut(s)	141, 429, 659, 725, 852, 1223, 1271, 1287
SatI	GCNGC	2 cut(s)	354, 639
Sau3AI	GATC	3 cut(s)	406, 490, 1208
Sau96I	GGNCC	3 cut(s)	535, 664, 1240
SchI	GAGTC	2 cut(s)	1088, 1309
ScrFI	CCNGG	4 cut(s)	903, 1109, 1244, 1312
SduI	GDGCHC	2 cut(s)	46, 56
SfaNI	GCATC	6 cut(s)	8, 167, 365, 560, 1038, 1265
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	3 cut(s)	535, 664, 1240
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	77, 753
SmoI	CTYRAG	2 cut(s)	77, 753
SnaBI	TACGTA	1 cut(s)	650
SsiI	CCGC	3 cut(s)	198, 370, 638
SspI	AATATT	1 cut(s)	951
SspMI	CTAG	3 cut(s)	690, 1167, 1388
SstI	GAGCTC	1 cut(s)	46
StyD4I	CCNGG	4 cut(s)	901, 1107, 1242, 1310
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	2 cut(s)	110, 770
TaiI	ACGT	4 cut(s)	462, 652, 1063, 1198
TaqI	TCGA	4 cut(s)	433, 734, 754, 1357
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	2 cut(s)	568, 1307
Tru1I	TTAA	8 cut(s)	141, 429, 659, 725, 852, 1223, 1271, 1287
Tru9I	TTAA	8 cut(s)	141, 429, 659, 725, 852, 1223, 1271, 1287
TscAI	CASTG	4 cut(s)	113, 187, 485, 1099
TseFI	GTSAC	2 cut(s)	301, 518
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	301, 518
TspDTI	ATGAA	6 cut(s)	146, 411, 807, 1233, 1314, 1320
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	4 cut(s)	113, 187, 485, 1099
Van91I	CCANNNNNTGG	1 cut(s)	964
VpaK11BI	GGWCC	3 cut(s)	535, 664, 1240
VspI	ATTAAT	2 cut(s)	141, 1223
XapI	RAATTY	3 cut(s)	1283, 1346, 1391
XceI	RCATGY	4 cut(s)	440, 645, 1106, 1204
XhoI	CTCGAG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	3 cut(s)	690, 1167, 1388
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.