Rorug05G0175000

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
16271004 .. 16271792
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0175000.1

Sequence Viewer

Length: 657 bp
ATGGCCAACCCCAACAACACAAACACCACACCATCATCCACAAATACCACAGTTGCTGAAACTGTAACACTCTCCAACAACGAAAACGTTGCTGCTGCTCCTCTCGGCACTGCTATAAATGACCACCACGTCCAGGGCCTTGAGGCACCGGTGGTAATCACTGCTGAGAGACTTTATGCAGCAGTTACGGACTGTGGTGAAAGTACTGAGTATAGTATACTATATTGTCCCACCACGGGAAAAGAGATGAAGCTCGTGGCAGGACAACCCCAGTCGGGGACCCTAACCACTGCCCAAACTGGGACCGGCGCACCGGAGTCTTCCCAGGGGAAGCGTAACATGGATGAGCTACCTCGTTGTCATGTATGTAACAGACAATTTATCTCATCGAGATCCCTCCAAAGCCATATGCAAGTCCACAAGGATAGATCAAGAAGACGTGTTAGAGCTCCTCCAACATTTAAAGGGCATAGAAAAGCTGTTCAAAGAGTTGAGGTGCCGAACAACACAACAATCCCCGAGATAATTGATCTCACTTTAGTTAGGGATGTTGGTTCTCCTCCTGAGGAATGCAGGATCCAGATTGATTTGAACAAGCCCCCTCCCAGGGATGATGAAGATGATGGTATGGGCGGTAGGCCGGGGTTGGTTGCATAA

Protein Analysis

218

Amino Acids

23.61

Weight (kDa)

6.31

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 2 cut(s) 145, 496
AccI GTMKAC 1 cut(s) 217
AciI CCGC 1 cut(s) 633
AclI AACGTT 1 cut(s) 87
AclWI GGATC 3 cut(s) 387, 571, 584
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 7 cut(s) 133, 236, 275, 276, 300, 606, 607
AflIII ACRYGT 1 cut(s) 439
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 2 cut(s) 485, 592
AjiI CACGTC 2 cut(s) 130, 440
AjnI CCWGG 3 cut(s) 132, 324, 605
AluBI AGCT 4 cut(s) 253, 349, 449, 479
AluI AGCT 4 cut(s) 253, 349, 449, 479
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 3 cut(s) 387, 571, 584
AlwNI CAGNNNCTG 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 3 cut(s) 3, 136, 638
ApeKI GCWGC 3 cut(s) 92, 95, 179
AsiGI ACCGGT 1 cut(s) 148
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 3 cut(s) 136, 279, 303
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 2 cut(s) 279, 303
AxyI CCTNAGG 1 cut(s) 564
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 576
BanI GGYRCC 2 cut(s) 145, 496
BanII GRGCYC 1 cut(s) 451
BauI CACGAG 1 cut(s) 254
BbsI GAAGAC 2 cut(s) 312, 442
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 79, 82, 191
BccI CCATC 2 cut(s) 40, 617
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 3 cut(s) 134, 326, 607
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 163
BisI GCNGC 3 cut(s) 93, 96, 180
BlsI GCNGC 3 cut(s) 94, 97, 181
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 4 cut(s) 134, 326, 607, 642
Bme18I GGWCC 2 cut(s) 279, 303
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 2 cut(s) 130, 440
BmgT120I GGNCC 3 cut(s) 136, 279, 303
BmiI GGNNCC 6 cut(s) 147, 280, 281, 304, 498, 578
BmrFI CCNGG 4 cut(s) 134, 326, 607, 642
BmrI ACTGGG 2 cut(s) 265, 309
BmuI ACTGGG 2 cut(s) 265, 309
BpiI GAAGAC 2 cut(s) 312, 442
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 642
BsaJI CCNNGG 7 cut(s) 133, 234, 324, 325, 605, 606, 641
BsaWI WCCGGW 2 cut(s) 148, 313
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 236, 275, 276, 300, 606, 607
Bse118I RCCGGY 2 cut(s) 148, 305
Bse1I ACTGG 2 cut(s) 271, 304
Bse21I CCTNAGG 1 cut(s) 564
BseBI CCWGG 3 cut(s) 134, 326, 607
BseDI CCNNGG 7 cut(s) 133, 234, 324, 325, 605, 606, 641
BseGI GGATG 4 cut(s) 35, 349, 553, 616
BseLI CCNNNNNNNGG 7 cut(s) 133, 236, 275, 276, 300, 606, 607
BseMII CTCAG 3 cut(s) 156, 198, 555
BseNI ACTGG 2 cut(s) 271, 304
BseRI GAGGAG 3 cut(s) 90, 441, 549
BseXI GCAGC 3 cut(s) 79, 82, 191
BshFI GGCC 3 cut(s) 5, 138, 640
BshNI GGYRCC 2 cut(s) 145, 496
BshTI ACCGGT 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 4 cut(s) 149, 306, 314, 641
BslFI GGGAC 3 cut(s) 213, 292, 316
BslI CCNNNNNNNGG 7 cut(s) 133, 236, 275, 276, 300, 606, 607
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 3 cut(s) 213, 292, 316
BsmI GAATGC 1 cut(s) 575
BsnI GGCC 3 cut(s) 5, 138, 640
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 4 cut(s) 392, 428, 529, 576
BspACI CCGC 1 cut(s) 633
BspANI GGCC 3 cut(s) 5, 138, 640
BspCNI CTCAG 3 cut(s) 157, 199, 556
BspLI GGNNCC 6 cut(s) 147, 280, 281, 304, 498, 578
BspPI GGATC 3 cut(s) 387, 571, 584
BspT107I GGYRCC 2 cut(s) 145, 496
BsrFI RCCGGY 2 cut(s) 148, 305
BsrI ACTGG 2 cut(s) 271, 304
BssAI RCCGGY 2 cut(s) 148, 305
BssECI CCNNGG 7 cut(s) 133, 234, 324, 325, 605, 606, 641
BssMI GATC 4 cut(s) 392, 428, 529, 576
BssNAI GTATAC 1 cut(s) 218
BssSI CACGAG 1 cut(s) 254
Bst1107I GTATAC 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 3 cut(s) 134, 326, 607
Bst4CI ACNGT 3 cut(s) 52, 64, 194
BstDEI CTNAG 3 cut(s) 165, 207, 564
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 4 cut(s) 35, 349, 553, 616
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 4 cut(s) 395, 431, 532, 579
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 392, 428, 529, 576
BstNI CCWGG 3 cut(s) 134, 326, 607
BstSCI CCNGG 4 cut(s) 132, 324, 605, 640
BstV1I GCAGC 3 cut(s) 79, 82, 191
BstV2I GAAGAC 2 cut(s) 312, 442
BstX2I RGATCY 2 cut(s) 392, 576
BstYI RGATCY 2 cut(s) 392, 576
BstZ17I GTATAC 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 564
BsuRI GGCC 3 cut(s) 5, 138, 640
BtgI CCRYGG 1 cut(s) 234
BtrI CACGTC 2 cut(s) 130, 440
BtsCI GGATG 4 cut(s) 35, 349, 553, 616
BtsI GCAGTG 3 cut(s) 108, 159, 288
BtsIMutI CAGTG 3 cut(s) 108, 159, 288
CaiI CAGNNNCTG 1 cut(s) 56
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 2 cut(s) 148, 305
Cfr13I GGNCC 3 cut(s) 136, 279, 303
Csp6I GTAC 1 cut(s) 204
CspAI ACCGGT 1 cut(s) 148
CviAII CATG 2 cut(s) 340, 362
CviJI RGCY 9 cut(s) 5, 138, 253, 349, 405, 449, 479, 598, 640
CviKI_1 RGCY 9 cut(s) 5, 138, 253, 349, 405, 449, 479, 598, 640
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 3 cut(s) 165, 207, 564
DpnI GATC 4 cut(s) 394, 430, 531, 578
DpnII GATC 4 cut(s) 392, 428, 529, 576
DraI TTTAAA 1 cut(s) 463
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 451
Eco47I GGWCC 2 cut(s) 279, 303
Eco53kI GAGCTC 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 1 cut(s) 449
EcoO109I RGGNCCY 2 cut(s) 136, 279
EcoRII CCWGG 3 cut(s) 132, 324, 605
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 2 cut(s) 343, 365
FaqI GGGAC 3 cut(s) 213, 292, 316
FatI CATG 2 cut(s) 339, 361
FauNDI CATATG 1 cut(s) 408
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 93, 96, 180
FokI GGATG 4 cut(s) 22, 356, 560, 623
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 3 cut(s) 93, 96, 180
GlaI GCGC 1 cut(s) 310
GluI GCNGC 3 cut(s) 93, 96, 180
HaeIII GGCC 3 cut(s) 5, 138, 640
HapII CCGG 4 cut(s) 149, 306, 314, 641
HhaI GCGC 1 cut(s) 311
Hin1II CATG 2 cut(s) 343, 365
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 317
HpaII CCGG 4 cut(s) 149, 306, 314, 641
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 218, 418
Hpy188III TCNNGA 4 cut(s) 390, 432, 563, 580
Hpy8I GTNNAC 2 cut(s) 218, 418
HpyCH4III ACNGT 3 cut(s) 52, 64, 194
HpyCH4IV ACGT 3 cut(s) 87, 129, 439
HpyCH4V TGCA 4 cut(s) 179, 412, 573, 653
HpyF3I CTNAG 3 cut(s) 165, 207, 564
HpySE526I ACGT 3 cut(s) 87, 129, 439
Hsp92II CATG 2 cut(s) 343, 365
HspAI GCGC 1 cut(s) 309
KflI GGGWCCC 1 cut(s) 279
Kzo9I GATC 4 cut(s) 392, 428, 529, 576
LmnI GCTCC 2 cut(s) 103, 454
Lsp1109I GCAGC 3 cut(s) 79, 82, 191
MaeII ACGT 3 cut(s) 87, 129, 439
MaeIII GTNAC 4 cut(s) 64, 184, 335, 368
MalI GATC 4 cut(s) 394, 430, 531, 578
MboI GATC 4 cut(s) 392, 428, 529, 576
MboII GAAGA 3 cut(s) 312, 447, 629
MflI RGATCY 2 cut(s) 392, 576
MhlI GDGCHC 1 cut(s) 451
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 377, 525
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 99, 479
MnlI CCTC 9 cut(s) 111, 136, 363, 407, 462, 487, 559, 570, 612
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 149, 306, 314, 641
MspR9I CCNGG 4 cut(s) 134, 326, 607, 642
Mva1269I GAATGC 1 cut(s) 575
MvaI CCWGG 3 cut(s) 134, 326, 607
NciI CCSGG 1 cut(s) 642
NdeI CATATG 1 cut(s) 408
NdeII GATC 4 cut(s) 392, 428, 529, 576
NlaIII CATG 2 cut(s) 343, 365
NlaIV GGNNCC 6 cut(s) 147, 280, 281, 304, 498, 578
NmeAIII GCCGAG 1 cut(s) 84
PasI CCCWGGG 2 cut(s) 325, 606
PctI GAATGC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 3 cut(s) 94, 97, 181
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 279
Psp124BI GAGCTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 3 cut(s) 132, 324, 605
PspGI CCWGG 3 cut(s) 132, 324, 605
PspN4I GGNNCC 6 cut(s) 147, 280, 281, 304, 498, 578
PspPI GGNCC 3 cut(s) 136, 279, 303
PspPPI RGGWCCY 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 56
PsuI RGATCY 2 cut(s) 392, 576
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 3 cut(s) 93, 96, 180
Sau3AI GATC 4 cut(s) 392, 428, 529, 576
Sau96I GGNCC 3 cut(s) 136, 279, 303
ScaI AGTACT 1 cut(s) 205
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 4 cut(s) 134, 326, 607, 642
SduI GDGCHC 1 cut(s) 451
SetI ASST 9 cut(s) 90, 132, 255, 351, 355, 442, 451, 481, 498
SgrAI CRCCGGYG 1 cut(s) 148
SinI GGWCC 2 cut(s) 279, 303
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 377, 525
SsiI CCGC 1 cut(s) 633
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 4 cut(s) 132, 324, 605, 640
TaaI ACNGT 3 cut(s) 52, 64, 194
TaiI ACGT 3 cut(s) 90, 132, 442
TaqI TCGA 1 cut(s) 389
TasI AATT 2 cut(s) 377, 525
TatI WGTACW 1 cut(s) 203
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 3 cut(s) 115, 166, 295
TseI GCWGC 3 cut(s) 92, 95, 179
TspDTI ATGAA 2 cut(s) 263, 630
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 3 cut(s) 115, 166, 295
VpaK11BI GGWCC 2 cut(s) 279, 303
XmiI GTMKAC 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.