Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

3052200 .. 3055310

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGAGTAGGTCATCCTTCAGTACCCTGCATGGAAAATTGGGAAGCACAGTTGAGTTGATTCTTGATGTCCCGAGCAGTAGTCTTGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCATTGCCATCTACTGCTCTAGAGCCTTCCTCTCTTTACGACCTTCTCCTCTTCCCAGACATACCAACTCCACATTCATATCTCGCACACTCTCTTACTCCATTGTTAGCGTCGAGCCAGTCTCGGTCCCAGCCGTTAATGGATTCCAAGCAGACCAAGAAAGCCTCACTGAGCTTGTGAAGAAGAAAAATCTCAAGGAGCTCTTGGAGCTTGGAGGGGTTGAAAAAGTAGCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATGCTGAAGATATTGCGCGAAGACACGAAGCATTTGGTTCCAATACATACGAGAAACCGCCAACGCAAGGATTCCTCCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAAGCCTAATCCTCTTGGGATGTGCCGCGCTTTCTCTTGGTGTCGGCATCAAAGAACATGGATTCAAAGATGGCTGGATTGACGGTGGAAGCAGTTGTCTCGCTGTCATTCTGGTCATTTCTGTTTCTGCTATTAGCAATTACAGTCAGAGCAGACGGTTTGAGGCTGACAAGCTGTCGAAAGTCAGCAACAATCTCCAAATTGAGGCTGTGAGAAATGGAAGGCGCATGCAGATTTCCATAATTAAAATTGTGGTAGGTGATGTCATTTGTTTGAAGAATGGAGACCAAGTTCCAGCTGATGGATTGCTTTTAGATGGTCATTCTTTATCAGTAGATGAATCAAGCATGACAGGGGAGAGTGACCATGCTGAGGTAAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATCGCTTATGGTCATGGTCGCATGCTCGTCACGTCAGTCGGGATGAACACGAACTGGGGTGATATGATGAGCCAAACCAGCCAAGAGACCAGTGAAAAGACACCTTTGCAAGCACGTCTAGACAAGCTAACATCGTCAATGCATAAAGTTCGTTTGGCATTTGCTTTTTTTGTCCTTGTACACATGTTGGTCCGATACTTCACTGGGAATACAGAGGATGAGAATGGAAACAAGGAGTACAATGGAAGGAAAACGAAGTCTGATGACATAATAAAAGCTATCATTGGAATTGTACTAGCTGCACTTACAATTGTTGAGGTGGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCTTATTCCGTGAAGAGAATGATGGCCGATAATGCAATGGTGCGGAAGCTCTCTGATTGTGAGACCATGGGATCAGCTACAACAATTTGTACTGACAAAACAGGCACTCTGACCATGAACCAGATGAAGGTGACGAAGTTTTGGTTAGGGAAAGAATGTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCGTATGTTCTCAACTTTATCCAAGAAGGGGTTTCTCTCAACACAACTGGCAGTGTGTACAGGCCTAGCTTGGATTCCGAAATTGAGATCTCTGGCAGTCCCACTGAAAAGGCTATTCTTTCATGGGTAGTACATGGGTTGAAGATAAATATGGAGGAAGTGGTGAAGAGCTGTAGCATTCTCCACGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAGGCAGACAACTCAATCCATGTACACAGGAAAGGAGCAGCAGAAATGATACTAGCAATGTGTACAAGTTACTATGATGCCTCTGGAACTGTTAAGGATATGGATTACAATGAAAAAATGAACTTCGAGCAGATTATGCAAGGTATGGGAGCCGACAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTCCAGCTGAGGAGCAAGTTGAAGGAGACCAGAAAGTTATGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGTCGTCCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAGTGTGGGATACTCAGGCCTGGTCAGGACATGCTCGGAGCAGTGATAGAAGGTGTCGAATTTCACAACTACACGCCAGAAGAGAGAATGGAGAAAGTTGAGAAAATTGCTGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGATGGTACCAATGATGCACCGGCACTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGGGAGCTCAGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCGACAATTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATCCAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACATACTTGTAGCTCTTGCTCTTGCCACAGAAAAACCGACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACGGCACCTCTCATCACAAACATCATGTGGAGGAACCTCTTACCTCAAGCACTGTATCAAATAACAGTCCTATTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGTGAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCGAGGAAGCTAGAAAAGAAGAATGTGGTCAAGGGAATACATACCGATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTTATCTCTTGGCCAATTGGTTGGCTAGTCATGTCTATACCTGTTCCACAGAAACCCATTTTCAGCTATCTGAAGATGAAGAAAAATAAGCACCCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1036

Amino Acids

113.74

Weight (kDa)

7.27

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	109 - 178	7.4e-14	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	236 - 330	9.4e-20	P-type ATPase actuator domain
Hydrolase	PF00702	454 - 775	8.8e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	495 - 665	1e-27	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	846 - 1013	2.7e-46	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2519
Acc65I	GGTACC	1 cut(s)	2291
AccB1I	GGYRCC	2 cut(s)	2291, 2659
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccI	GTMKAC	1 cut(s)	1252
AccII	CGCG	2 cut(s)	409, 527
AciI	CCGC	5 cut(s)	449, 525, 1321, 2073, 2516
AclWI	GGATC	3 cut(s)	1357, 1976, 2906
AcoI	YGGCCR	2 cut(s)	1302, 3020
AcsI	RAATTY	2 cut(s)	2150, 2951
AcuI	CTGAAG	4 cut(s)	417, 2391, 2906, 3101
AdeI	CACNNNGTG	1 cut(s)	2094
AfiI	CCNNNNNNNGG	7 cut(s)	458, 703, 800, 871, 1405, 1495, 2648
AflIII	ACRYGT	1 cut(s)	1098
AgeI	ACCGGT	1 cut(s)	2282
AhdI	GACNNNNNGTC	1 cut(s)	673
AjiI	CACGTC	3 cut(s)	948, 1031, 1654
AjnI	CCWGG	3 cut(s)	1993, 2110, 2814
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AleI	CACNNNNGTG	1 cut(s)	2804
AloI	GAACNNNNNNTCC	2 cut(s)	774, 806
Alw21I	GWGCWC	2 cut(s)	318, 2375
Alw26I	GTCTC	7 cut(s)	241, 602, 777, 995, 1334, 1914, 2052
AlwI	GGATC	3 cut(s)	1357, 1976, 2906
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	5 cut(s)	1302, 1529, 1972, 2108, 3020
ApeKI	GCWGC	3 cut(s)	1214, 1742, 2492
ApoI	RAATTY	2 cut(s)	2150, 2951
AsiGI	ACCGGT	1 cut(s)	2282
Asp700I	GAANNNNTTC	1 cut(s)	893
Asp718I	GGTACC	1 cut(s)	2291
AspLEI	GCGC	3 cut(s)	409, 529, 726
AspS9I	GGNCC	3 cut(s)	241, 1105, 1972
AsuII	TTCGAA	1 cut(s)	1670
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	2 cut(s)	241, 1105
BalI	TGGCCA	1 cut(s)	3022
BanI	GGYRCC	2 cut(s)	2291, 2659
BanII	GRGCYC	2 cut(s)	318, 2375
BbsI	GAAGAC	2 cut(s)	418, 2208
Bbv12I	GWGCWC	2 cut(s)	318, 2375
BbvCI	CCTCAGC	2 cut(s)	870, 1902
BbvI	GCAGC	3 cut(s)	1201, 1754, 2504
BccI	CCATC	9 cut(s)	131, 563, 794, 809, 1294, 1940, 2200, 2282, 2926
BceAI	ACGGC	2 cut(s)	233, 2673
BcgI	CGANNNNNNTGC	6 cut(s)	580, 614, 1046, 1080, 1861, 1895
BciT130I	CCWGG	3 cut(s)	1995, 2112, 2816
BciVI	GTATCC	1 cut(s)	2094
BclI	TGATCA	3 cut(s)	2385, 2502, 2574
BcoDI	GTCTC	7 cut(s)	241, 602, 777, 995, 1334, 1914, 2052
BfaI	CTAG	7 cut(s)	135, 1034, 1211, 1533, 1757, 2846, 3035
BfmI	CTRYAG	1 cut(s)	1639
BfuAI	ACCTGC	1 cut(s)	2519
BfuI	GTATCC	1 cut(s)	2094
BglII	AGATCT	1 cut(s)	1554
BisI	GCNGC	5 cut(s)	525, 1215, 1743, 2493, 2517
BlsI	GCNGC	5 cut(s)	526, 1216, 1744, 2494, 2518
Bme1390I	CCNGG	3 cut(s)	1995, 2112, 2816
Bme18I	GGWCC	2 cut(s)	241, 1105
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	3 cut(s)	948, 1031, 1654
BmgT120I	GGNCC	3 cut(s)	241, 1105, 1972
BmiI	GGNNCC	6 cut(s)	243, 430, 1855, 2293, 2661, 2690
BmrFI	CCNGG	3 cut(s)	1995, 2112, 2816
BmrI	ACTGGG	2 cut(s)	979, 1128
BmsI	GCATC	8 cut(s)	355, 356, 382, 555, 1771, 1859, 1881, 2290
BmuI	ACTGGG	2 cut(s)	979, 1128
BpiI	GAAGAC	2 cut(s)	418, 2208
BplI	GAGNNNNNCTC	4 cut(s)	129, 161, 221, 253
Bpu10I	CCTNAGC	2 cut(s)	870, 1902
Bpu14I	TTCGAA	1 cut(s)	1670
BpuEI	CTTGAG	3 cut(s)	293, 2685, 2930
BsaI	GGTCTC	4 cut(s)	777, 995, 1334, 1914
BsaJI	CCNNGG	1 cut(s)	1344
BsaWI	WCCGGW	2 cut(s)	2054, 2282
BsaXI	ACNNNNNCTCC	6 cut(s)	774, 804, 1680, 1710, 2049, 2079
Bsc4I	CCNNNNNNNGG	7 cut(s)	458, 703, 800, 871, 1405, 1495, 2648
Bse118I	RCCGGY	2 cut(s)	2282, 2305
Bse1I	ACTGG	6 cut(s)	233, 974, 1005, 1123, 1519, 2645
Bse3DI	GCAATG	5 cut(s)	117, 1320, 1767, 2252, 2901
BseBI	CCWGG	3 cut(s)	1995, 2112, 2816
BseDI	CCNNGG	1 cut(s)	1344
BseGI	GGATG	6 cut(s)	11, 524, 963, 1138, 2398, 2463
BseLI	CCNNNNNNNGG	7 cut(s)	458, 703, 800, 871, 1405, 1495, 2648
BseMI	GCAATG	5 cut(s)	117, 1320, 1767, 2252, 2901
BseMII	CTCAG	8 cut(s)	276, 861, 876, 1879, 1893, 2082, 2119, 2388
BseNI	ACTGG	6 cut(s)	233, 974, 1005, 1123, 1519, 2645
BseRI	GAGGAG	2 cut(s)	153, 1919
BseXI	GCAGC	3 cut(s)	1201, 1754, 2504
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	1200
Bsh1236I	CGCG	2 cut(s)	409, 527
BshFI	GGCC	5 cut(s)	1304, 1531, 1974, 2110, 3022
BshNI	GGYRCC	2 cut(s)	2291, 2659
BshTI	ACCGGT	1 cut(s)	2282
BsiHKAI	GWGCWC	2 cut(s)	318, 2375
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	3 cut(s)	2055, 2283, 2306
BslFI	GGGAC	7 cut(s)	53, 227, 922, 1551, 1977, 2522, 2994
BslI	CCNNNNNNNGG	7 cut(s)	458, 703, 800, 871, 1405, 1495, 2648
BsmAI	GTCTC	7 cut(s)	241, 602, 777, 995, 1334, 1914, 2052
BsmFI	GGGAC	7 cut(s)	53, 227, 922, 1551, 1977, 2522, 2994
BsmI	GAATGC	3 cut(s)	106, 1644, 1877
BsnI	GGCC	5 cut(s)	1304, 1531, 1974, 2110, 3022
Bso31I	GGTCTC	4 cut(s)	777, 995, 1334, 1914
BsoBI	CYCGRG	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	1670
Bsp1286I	GDGCHC	2 cut(s)	318, 2375
Bsp1407I	TGTACA	5 cut(s)	1093, 1524, 1726, 1766, 2442
Bsp143I	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
Bsp19I	CCATGG	1 cut(s)	1344
BspACI	CCGC	5 cut(s)	449, 525, 1321, 2073, 2516
BspANI	GGCC	5 cut(s)	1304, 1531, 1974, 2110, 3022
BspCNI	CTCAG	8 cut(s)	277, 862, 877, 1878, 1894, 2083, 2118, 2387
BspFNI	CGCG	2 cut(s)	409, 527
BspLI	GGNNCC	6 cut(s)	243, 430, 1855, 2293, 2661, 2690
BspMI	ACCTGC	1 cut(s)	2519
BspPI	GGATC	3 cut(s)	1357, 1976, 2906
BspQI	GCTCTTC	1 cut(s)	1628
BspT104I	TTCGAA	1 cut(s)	1670
BspT107I	GGYRCC	2 cut(s)	2291, 2659
BspTNI	GGTCTC	4 cut(s)	777, 995, 1334, 1914
BsrDI	GCAATG	5 cut(s)	117, 1320, 1767, 2252, 2901
BsrFI	RCCGGY	2 cut(s)	2282, 2305
BsrGI	TGTACA	5 cut(s)	1093, 1524, 1726, 1766, 2442
BsrI	ACTGG	6 cut(s)	233, 974, 1005, 1123, 1519, 2645
BssAI	RCCGGY	2 cut(s)	2282, 2305
BssECI	CCNNGG	1 cut(s)	1344
BssMI	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
BssT1I	CCWWGG	1 cut(s)	1344
Bst2UI	CCWGG	3 cut(s)	1995, 2112, 2816
Bst4CI	ACNGT	8 cut(s)	49, 584, 644, 657, 1795, 2482, 2709, 2722
Bst6I	CTCTTC	5 cut(s)	171, 1286, 1628, 1694, 2166
BstAPI	GCANNNNNTGC	1 cut(s)	1840
BstAUI	TGTACA	5 cut(s)	1093, 1524, 1726, 1766, 2442
BstBI	TTCGAA	1 cut(s)	1670
BstC8I	GCNNGC	3 cut(s)	728, 938, 1026
BstDEI	CTNAG	8 cut(s)	285, 870, 885, 1865, 1902, 2091, 2105, 2374
BstDSI	CCRYGG	1 cut(s)	1344
BstF5I	GGATG	6 cut(s)	11, 524, 963, 1138, 2398, 2463
BstFNI	CGCG	2 cut(s)	409, 527
BstHHI	GCGC	3 cut(s)	409, 529, 726
BstKTI	GATC	9 cut(s)	1352, 1557, 1984, 2388, 2505, 2577, 2733, 2793, 2901
BstMAI	GTCTC	7 cut(s)	241, 602, 777, 995, 1334, 1914, 2052
BstMBI	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
BstMWI	GCNNNNNNNGC	9 cut(s)	119, 322, 993, 1310, 1840, 1869, 2207, 2411, 2525
BstNI	CCWGG	3 cut(s)	1995, 2112, 2816
BstNSI	RCATGY	4 cut(s)	730, 940, 1102, 2125
BstSCI	CCNGG	3 cut(s)	1993, 2110, 2814
BstSFI	CTRYAG	1 cut(s)	1639
BstUI	CGCG	2 cut(s)	409, 527
BstV1I	GCAGC	3 cut(s)	1201, 1754, 2504
BstV2I	GAAGAC	2 cut(s)	418, 2208
BstX2I	RGATCY	2 cut(s)	1554, 1981
BstXI	CCANNNNNNTGG	1 cut(s)	3030
BstYI	RGATCY	2 cut(s)	1554, 1981
BsuI	GTATCC	1 cut(s)	2094
BsuRI	GGCC	5 cut(s)	1304, 1531, 1974, 2110, 3022
BtgI	CCRYGG	1 cut(s)	1344
BtgZI	GCGATG	1 cut(s)	1858
BtrI	CACGTC	3 cut(s)	948, 1031, 1654
BtsCI	GGATG	6 cut(s)	11, 524, 963, 1138, 2398, 2463
BtsI	GCAGTG	4 cut(s)	1525, 2139, 2283, 2913
BveI	ACCTGC	1 cut(s)	2519
Cac8I	GCNNGC	3 cut(s)	728, 938, 1026
CfoI	GCGC	3 cut(s)	409, 529, 726
Cfr10I	RCCGGY	2 cut(s)	2282, 2305
Cfr13I	GGNCC	3 cut(s)	241, 1105, 1972
CseI	GACGC	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	2282
DdeI	CTNAG	8 cut(s)	285, 870, 885, 1865, 1902, 2091, 2105, 2374
DpnI	GATC	9 cut(s)	1351, 1556, 1983, 2387, 2504, 2576, 2732, 2792, 2900
DpnII	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
DraIII	CACNNNGTG	1 cut(s)	2094
DriI	GACNNNNNGTC	1 cut(s)	673
EaeI	YGGCCR	2 cut(s)	1302, 3020
Eam1104I	CTCTTC	5 cut(s)	171, 1286, 1628, 1694, 2166
Eam1105I	GACNNNNNGTC	1 cut(s)	673
EarI	CTCTTC	5 cut(s)	171, 1286, 1628, 1694, 2166
Ecl136II	GAGCTC	2 cut(s)	316, 2373
Eco130I	CCWWGG	1 cut(s)	1344
Eco147I	AGGCCT	2 cut(s)	1531, 2110
Eco24I	GRGCYC	2 cut(s)	318, 2375
Eco31I	GGTCTC	4 cut(s)	777, 995, 1334, 1914
Eco47I	GGWCC	2 cut(s)	241, 1105
Eco53kI	GAGCTC	2 cut(s)	316, 2373
Eco57I	CTGAAG	4 cut(s)	417, 2391, 2906, 3101
Eco88I	CYCGRG	1 cut(s)	70
EcoICRI	GAGCTC	2 cut(s)	316, 2373
EcoRII	CCWGG	3 cut(s)	1993, 2110, 2814
EcoT14I	CCWWGG	1 cut(s)	1344
EcoT22I	ATGCAT	3 cut(s)	1059, 1874, 2999
EcoT38I	GRGCYC	2 cut(s)	318, 2375
ErhI	CCWWGG	1 cut(s)	1344
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	7 cut(s)	53, 227, 922, 1551, 1977, 2522, 2994
FbaI	TGATCA	3 cut(s)	2385, 2502, 2574
FblI	GTMKAC	1 cut(s)	1252
Fnu4HI	GCNGC	5 cut(s)	525, 1215, 1743, 2493, 2517
FokI	GGATG	5 cut(s)	531, 970, 1145, 2405, 2450
FriOI	GRGCYC	2 cut(s)	318, 2375
Fsp4HI	GCNGC	5 cut(s)	525, 1215, 1743, 2493, 2517
FspBI	CTAG	7 cut(s)	135, 1034, 1211, 1533, 1757, 2846, 3035
GlaI	GCGC	3 cut(s)	408, 528, 725
GluI	GCNGC	5 cut(s)	525, 1215, 1743, 2493, 2517
GsaI	CCCAGC	1 cut(s)	248
HaeIII	GGCC	5 cut(s)	1304, 1531, 1974, 2110, 3022
HapII	CCGG	3 cut(s)	2055, 2283, 2306
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	409, 529, 726
Hin6I	GCGC	3 cut(s)	407, 527, 724
HinP1I	GCGC	3 cut(s)	407, 527, 724
HincII	GTYRAC	1 cut(s)	2569
HindII	GTYRAC	1 cut(s)	2569
HindIII	AAGCTT	2 cut(s)	1449, 2231
HpaII	CCGG	3 cut(s)	2055, 2283, 2306
Hpy166II	GTNNAC	8 cut(s)	1096, 1253, 1525, 1729, 1767, 2038, 2443, 2569
Hpy8I	GTNNAC	8 cut(s)	1096, 1253, 1525, 1729, 1767, 2038, 2443, 2569
Hpy99I	CGWCG	2 cut(s)	230, 1658
HpyCH4III	ACNGT	8 cut(s)	49, 584, 644, 657, 1795, 2482, 2709, 2722
HpyCH4IV	ACGT	4 cut(s)	947, 1030, 1653, 2040
HpyF10VI	GCNNNNNNNGC	9 cut(s)	119, 322, 993, 1310, 1840, 1869, 2207, 2411, 2525
HpyF3I	CTNAG	8 cut(s)	285, 870, 885, 1865, 1902, 2091, 2105, 2374
HpySE526I	ACGT	4 cut(s)	947, 1030, 1653, 2040
HspAI	GCGC	3 cut(s)	407, 527, 724
KpnI	GGTACC	1 cut(s)	2295
Ksp22I	TGATCA	3 cut(s)	2385, 2502, 2574
Kzo9I	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
LguI	GCTCTTC	1 cut(s)	1628
LmnI	GCTCC	7 cut(s)	313, 322, 1739, 1853, 1906, 2129, 2370
Lsp1109I	GCAGC	3 cut(s)	1201, 1754, 2504
LweI	GCATC	8 cut(s)	355, 356, 382, 555, 1771, 1859, 1881, 2290
MaeI	CTAG	7 cut(s)	135, 1034, 1211, 1533, 1757, 2846, 3035
MaeII	ACGT	4 cut(s)	947, 1030, 1653, 2040
MaeIII	GTNAC	8 cut(s)	860, 880, 943, 1264, 1408, 1772, 2278, 2908
MalI	GATC	9 cut(s)	1351, 1556, 1983, 2387, 2504, 2576, 2732, 2792, 2900
MboI	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
MfeI	CAATTG	3 cut(s)	1224, 2913, 3024
MflI	RGATCY	2 cut(s)	1554, 1981
MhlI	GDGCHC	2 cut(s)	318, 2375
MlsI	TGGCCA	1 cut(s)	3022
MluNI	TGGCCA	1 cut(s)	3022
MlyI	GAGTC	1 cut(s)	1261
MmeI	TCCRAC	1 cut(s)	2497
Mox20I	TGGCCA	1 cut(s)	3022
Mph1103I	ATGCAT	3 cut(s)	1059, 1874, 2999
MroXI	GAANNNNTTC	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	3022
MseI	TTAA	6 cut(s)	252, 744, 1665, 1797, 1977, 2543
MslI	CAYNNNNRTG	2 cut(s)	2804, 2906
Msp20I	TGGCCA	1 cut(s)	3022
MspA1I	CMGCKG	2 cut(s)	797, 1901
MspI	CCGG	3 cut(s)	2055, 2283, 2306
MspR9I	CCNGG	3 cut(s)	1995, 2112, 2816
MunI	CAATTG	3 cut(s)	1224, 2913, 3024
Mva1269I	GAATGC	3 cut(s)	106, 1644, 1877
MvaI	CCWGG	3 cut(s)	1995, 2112, 2816
MvnI	CGCG	2 cut(s)	409, 527
MwoI	GCNNNNNNNGC	9 cut(s)	119, 322, 993, 1310, 1840, 1869, 2207, 2411, 2525
NcoI	CCATGG	1 cut(s)	1344
NdeII	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
NlaIV	GGNNCC	6 cut(s)	243, 430, 1855, 2293, 2661, 2690
NmuCI	GTSAC	7 cut(s)	860, 880, 943, 1264, 1408, 2278, 2908
NsiI	ATGCAT	3 cut(s)	1059, 1874, 2999
NspI	RCATGY	4 cut(s)	730, 940, 1102, 2125
NspV	TTCGAA	1 cut(s)	1670
OliI	CACNNNNGTG	1 cut(s)	2804
PaeI	GCATGC	2 cut(s)	730, 940
PceI	AGGCCT	2 cut(s)	1531, 2110
PciI	ACATGT	1 cut(s)	1098
PciSI	GCTCTTC	1 cut(s)	1628
PctI	GAATGC	3 cut(s)	106, 1644, 1877
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	9 cut(s)	58, 258, 378, 462, 561, 839, 889, 1541, 2344
PflMI	CCANNNNNTGG	1 cut(s)	800
PinAI	ACCGGT	1 cut(s)	2282
PkrI	GCNGC	5 cut(s)	526, 1216, 1744, 2494, 2518
PleI	GAGTC	1 cut(s)	1261
PpsI	GAGTC	1 cut(s)	1261
PscI	ACATGT	1 cut(s)	1098
Psp124BI	GAGCTC	2 cut(s)	318, 2375
Psp6I	CCWGG	3 cut(s)	1993, 2110, 2814
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	3 cut(s)	1993, 2110, 2814
PspN4I	GGNNCC	6 cut(s)	243, 430, 1855, 2293, 2661, 2690
PspPI	GGNCC	3 cut(s)	241, 1105, 1972
PsuI	RGATCY	2 cut(s)	1554, 1981
PvuII	CAGCTG	2 cut(s)	797, 1901
RseI	CAYNNNNRTG	2 cut(s)	2804, 2906
SacI	GAGCTC	2 cut(s)	318, 2375
SapI	GCTCTTC	1 cut(s)	1628
SaqAI	TTAA	6 cut(s)	252, 744, 1665, 1797, 1977, 2543
SatI	GCNGC	5 cut(s)	525, 1215, 1743, 2493, 2517
Sau3AI	GATC	9 cut(s)	1349, 1554, 1981, 2385, 2502, 2574, 2730, 2790, 2898
Sau96I	GGNCC	3 cut(s)	241, 1105, 1972
SchI	GAGTC	1 cut(s)	1261
ScrFI	CCNGG	3 cut(s)	1995, 2112, 2816
SduI	GDGCHC	2 cut(s)	318, 2375
SfaNI	GCATC	8 cut(s)	355, 356, 382, 555, 1771, 1859, 1881, 2290
SfcI	CTRYAG	1 cut(s)	1639
SfuI	TTCGAA	1 cut(s)	1670
SinI	GGWCC	2 cut(s)	241, 1105
SmiMI	CAYNNNNRTG	2 cut(s)	2804, 2906
SmlI	CTYRAG	3 cut(s)	308, 2700, 2945
SmoI	CTYRAG	3 cut(s)	308, 2700, 2945
SphI	GCATGC	2 cut(s)	730, 940
SseBI	AGGCCT	2 cut(s)	1531, 2110
SsiI	CCGC	5 cut(s)	449, 525, 1321, 2073, 2516
SspMI	CTAG	7 cut(s)	135, 1034, 1211, 1533, 1757, 2846, 3035
SstI	GAGCTC	2 cut(s)	318, 2375
StuI	AGGCCT	2 cut(s)	1531, 2110
StyD4I	CCNGG	3 cut(s)	1993, 2110, 2814
StyI	CCWWGG	1 cut(s)	1344
TaaI	ACNGT	8 cut(s)	49, 584, 644, 657, 1795, 2482, 2709, 2722
TaiI	ACGT	4 cut(s)	950, 1033, 1656, 2043
TaqI	TCGA	6 cut(s)	228, 677, 1656, 1670, 1830, 2148
TaqII	GACCGA	1 cut(s)	229
TatI	WGTACW	9 cut(s)	1093, 1152, 1207, 1367, 1524, 1597, 1726, 1766, 2442
TauI	GCSGC	2 cut(s)	527, 2519
TfiI	GAWTC	9 cut(s)	58, 258, 378, 462, 561, 839, 889, 1541, 2344
Tru1I	TTAA	6 cut(s)	252, 744, 1665, 1797, 1977, 2543
Tru9I	TTAA	6 cut(s)	252, 744, 1665, 1797, 1977, 2543
TseFI	GTSAC	7 cut(s)	860, 880, 943, 1264, 1408, 2278, 2908
TseI	GCWGC	3 cut(s)	1214, 1742, 2492
Tsp45I	GTSAC	7 cut(s)	860, 880, 943, 1264, 1408, 2278, 2908
TspGWI	ACGGA	3 cut(s)	1276, 1458, 2211
Van91I	CCANNNNNTGG	1 cut(s)	800
VpaK11BI	GGWCC	2 cut(s)	241, 1105
XapI	RAATTY	2 cut(s)	2150, 2951
XbaI	TCTAGA	2 cut(s)	134, 1033
XceI	RCATGY	4 cut(s)	730, 940, 1102, 2125
XmiI	GTMKAC	1 cut(s)	1252
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	7 cut(s)	135, 1034, 1211, 1533, 1757, 2846, 3035
Zsp2I	ATGCAT	3 cut(s)	1059, 1874, 2999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.