Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

3832099 .. 3835730

Gene Structure 3632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATACTAGCAATGTGTACAAGTTACTACGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGCAGATTAGTCAAGGTATGACAGCAAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTCCAGAAGAGGAGGAAGTTGAGGTAGACCAGAAAGTTGTGCTAAAGGAAGATGGCTTGACCCTATTGGGACTTGTAGGTCTTAAAGTTCATGTTGGTCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

83

Amino Acids

9.25

Weight (kDa)

4.57

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	1 - 76	1.5e-10	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmsI	GCATC	3 cut(s)	22, 110, 132
Bse3DI	GCAATG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	2 cut(s)	114, 201
CviKI_1	RGCY	2 cut(s)	114, 201
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	116
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	125
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	56, 101, 138, 237
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	18, 172
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	3 cut(s)	39, 149, 245
Hpy8I	GTNNAC	2 cut(s)	18, 172
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	239
LpnPI	CCDG	4 cut(s)	24, 162, 188, 230
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	3 cut(s)	22, 110, 132
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	23
MboII	GAAGA	2 cut(s)	164, 206
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	5 cut(s)	46, 125, 148, 151, 160
Mph1103I	ATGCAT	1 cut(s)	125
MseI	TTAA	2 cut(s)	48, 228
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	239
NsiI	ATGCAT	1 cut(s)	125
PctI	GAATGC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	48, 228
SatI	GCNGC	1 cut(s)	112
SetI	ASST	3 cut(s)	100, 171, 226
SfaNI	GCATC	3 cut(s)	22, 110, 132
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	8
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	48, 228
Tru9I	TTAA	2 cut(s)	48, 228
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	3 cut(s)	81, 89, 224
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.