Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

19531730 .. 19536633

Gene Structure 4904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGTCCTACTCTCACAGGCCGATGTCAAGGTCGTATGGCCGCCACCACCACGTCGACATAATGTCCAGCACCAGTGCCCTTCTTCCAGGCGGCGAGTTCATCGGCTACTCGAAGGGCCCATTCGATGTTGTTGACACGAAGAAGGCTCCTCTCCAAGCGCTCCTCCAATGGAGGGAGTGTTTTAAAAATGTAATTAATGGCATGGCGGAACGCAGTTTGCGAACCTTTGCCATTGCAAACAGAGAAATTAAATCGACAGATATTCCTGAGGGAGAGAATTCAAGACAATGGGCTTTACTTGAAAATGAGTTACTATTCCTTGCTGTTGTGGGTATAAAGGATGCAATACCCTTGTTTGATGATTCACTCATCTTAAACGACTACACCAATAACACCTATGTGAACCTGCAGGTACGCATGGTCACTGGAGACCATTTTTTGACTGCAAAAGCAATCGCGTTAGAGTGTGGAATTATTTCTGATAAAGATGCTACTGAGCCTAATATCATTGAAGGAAAAACATTCCGTGATTATCTGAAAAAGAAAGAGAAGAATGTAATGTGGAGATCTTACCCGAATGACAAGTTATTGCTTGTGCAAGCATTACGGAAGGGGGCAGATGTTGTTGCAGTAACAGGAGATGACACTAATGATGCTTCTGCCCTTCATGAGGTGGCCAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

229

Amino Acids

25.63

Weight (kDa)

6.31

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	57 - 116	3.5e-06	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	403, 417
AccI	GTMKAC	1 cut(s)	57
AccII	CGCG	1 cut(s)	461
AciI	CCGC	3 cut(s)	43, 93, 209
AcoI	YGGCCR	2 cut(s)	40, 678
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	417
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	175, 673
AgsI	TTSAA	3 cut(s)	285, 305, 515
AhdI	GACNNNNNGTC	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	426
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	4 cut(s)	20, 40, 118, 678
ApaI	GGGCCC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	280
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	118, 119
AxyI	CCTNAGG	1 cut(s)	270
BaeGI	GKGCMC	2 cut(s)	82, 122
BalI	TGGCCA	1 cut(s)	680
BanII	GRGCYC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	164
BfuAI	ACCTGC	2 cut(s)	403, 417
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	2 cut(s)	43, 94
BlsI	GCNGC	2 cut(s)	44, 95
Bme1390I	CCNGG	1 cut(s)	90
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	118, 119
BmiI	GGNNCC	2 cut(s)	120, 150
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	3 cut(s)	334, 481, 646
BpmI	CTGGAG	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 673
Bse1I	ACTGG	2 cut(s)	75, 433
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	175, 673
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	261, 489
BseNI	ACTGG	2 cut(s)	75, 433
BseRI	GAGGAG	2 cut(s)	141, 155
BseSI	GKGCMC	2 cut(s)	82, 122
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	4 cut(s)	22, 42, 120, 680
BslI	CCNNNNNNNGG	2 cut(s)	175, 673
BsmAI	GTCTC	1 cut(s)	426
BsnI	GGCC	4 cut(s)	22, 42, 120, 680
Bso31I	GGTCTC	1 cut(s)	426
Bsp120I	GGGCCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	82, 122
Bsp143I	GATC	1 cut(s)	569
BspACI	CCGC	3 cut(s)	43, 93, 209
BspANI	GGCC	4 cut(s)	22, 42, 120, 680
BspCNI	CTCAG	2 cut(s)	262, 490
BspFNI	CGCG	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	120, 150
BspMAI	CTGCAG	1 cut(s)	414
BspMI	ACCTGC	2 cut(s)	403, 417
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	75, 433
BssMI	GATC	1 cut(s)	569
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	2 cut(s)	270, 498
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	572
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	1 cut(s)	569
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	2 cut(s)	82, 122
BstUI	CGCG	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	22, 42, 120, 680
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	82, 426
BveI	ACCTGC	2 cut(s)	403, 417
Cac8I	GCNNGC	1 cut(s)	603
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	118, 119
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	3 cut(s)	205, 421, 671
CviJI	RGCY	8 cut(s)	22, 42, 108, 120, 149, 296, 502, 680
CviKI_1	RGCY	8 cut(s)	22, 42, 108, 120, 149, 296, 502, 680
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	2 cut(s)	270, 498
DpnI	GATC	1 cut(s)	571
DpnII	GATC	1 cut(s)	569
DraI	TTTAAA	1 cut(s)	187
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	40, 678
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	224
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	426
Eco47III	AGCGCT	1 cut(s)	162
Eco81I	CCTNAGG	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	208, 424, 674
FaiI	YATR	7 cut(s)	39, 62, 206, 338, 402, 422, 672
FatI	CATG	3 cut(s)	204, 420, 670
FblI	GTMKAC	1 cut(s)	57
Fnu4HI	GCNGC	2 cut(s)	43, 94
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	43, 94
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	43, 94
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	22, 42, 120, 680
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	208, 424, 674
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	58, 136
HindII	GTYRAC	2 cut(s)	58, 136
HinfI	GANTC	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	58, 136, 406
Hpy188I	TCNGA	2 cut(s)	484, 540
Hpy188III	TCNNGA	3 cut(s)	269, 285, 671
Hpy8I	GTNNAC	3 cut(s)	58, 136, 406
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	6 cut(s)	92, 109, 139, 509, 607, 677
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	239, 347, 412, 449, 601, 632
HpyF3I	CTNAG	2 cut(s)	270, 498
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	208, 424, 674
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	154, 168
LweI	GCATC	3 cut(s)	334, 481, 646
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	3 cut(s)	312, 424, 634
MalI	GATC	1 cut(s)	571
MboI	GATC	1 cut(s)	569
MboII	GAAGA	3 cut(s)	77, 154, 565
MflI	RGATCY	1 cut(s)	569
MhlI	GDGCHC	2 cut(s)	82, 122
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	4 cut(s)	195, 249, 280, 474
MluNI	TGGCCA	1 cut(s)	680
MnlI	CCTC	5 cut(s)	162, 168, 176, 265, 667
Mox20I	TGGCCA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	5 cut(s)	186, 198, 252, 377, 688
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	461
NdeII	GATC	1 cut(s)	569
NlaIII	CATG	3 cut(s)	208, 424, 674
NlaIV	GGNNCC	2 cut(s)	120, 150
NmuCI	GTSAC	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	401
PagI	TCATGA	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	44, 95
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	120, 150
PspOMI	GGGCCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	118, 119
PstI	CTGCAG	1 cut(s)	414
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	401
SalI	GTCGAC	1 cut(s)	56
SaqAI	TTAA	5 cut(s)	186, 198, 252, 377, 688
SatI	GCNGC	2 cut(s)	43, 94
Sau3AI	GATC	1 cut(s)	569
Sau96I	GGNCC	2 cut(s)	118, 119
SbfI	CCTGCAGG	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	90
SdaI	CCTGCAGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	82, 122
SetI	ASST	7 cut(s)	35, 57, 230, 401, 411, 417, 678
SfaNI	GCATC	3 cut(s)	334, 481, 646
SfcI	CTRYAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse8387I	CCTGCAGG	1 cut(s)	414
Sse9I	AATT	4 cut(s)	195, 249, 280, 474
SsiI	CCGC	3 cut(s)	43, 93, 209
StyD4I	CCNGG	1 cut(s)	88
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	4 cut(s)	57, 113, 126, 257
TasI	AATT	4 cut(s)	195, 249, 280, 474
TauI	GCSGC	2 cut(s)	45, 96
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	5 cut(s)	186, 198, 252, 377, 688
Tru9I	TTAA	5 cut(s)	186, 198, 252, 377, 688
TscAI	CASTG	2 cut(s)	82, 433
TseFI	GTSAC	1 cut(s)	424
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	91, 659
TspGWI	ACGGA	2 cut(s)	518, 625
TspRI	CASTG	2 cut(s)	82, 433
VspI	ATTAAT	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.