Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

2419595 .. 2420400

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00334970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCACCAATGATGCACCGCATTAAAAGAAGGCGATATAGGACTTTCTATGGGGATTCAAGGAACGAAGTGGCTAAAGAGAGCTCGGATATTGTGATAATGGATGATAACTTTGCTTCGGTTGCGACGGTTTTGATGTGGGGAAGATGTGTCTCTTGTGATCAACTTTGTTGCGGCGGTTTCAGCAGGTCAAGTCCCATTAACAGCGGTTCGGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCGCTTGCTCTTGCCACGAGAAAAACCCACAAGAGAACGATGGAGAAGCCACCGGTGGGAAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACCGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCAAGGAAGCTAGAGAAGAAGAATGTGTTCAAGGGAATACATACCAATAAGTTGTTCATGGGGATCATTGCGGTGACAATTGTTCTTCGTGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCACGAAACCCATTTTCAGCTATCGAAGATGAAGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

228

Amino Acids

25.57

Weight (kDa)

8.11

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	119 - 212	1.1e-21	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	5 cut(s)	19, 174, 177, 207, 497
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	611
AcsI	RAATTY	1 cut(s)	542
AfeI	AGCGCT	1 cut(s)	253
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	6 cut(s)	60, 388, 415, 424, 457, 565
AjnI	CCWGG	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	84, 436, 665
AluI	AGCT	3 cut(s)	84, 436, 665
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	497
Aor51HI	AGCGCT	1 cut(s)	253
AoxI	GGCC	1 cut(s)	611
ApoI	RAATTY	1 cut(s)	542
AsiGI	ACCGGT	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	254, 320
AsuHPI	GGTGA	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	2 cut(s)	284, 517
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	2 cut(s)	160, 232
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	2 cut(s)	437, 626
BfoI	RGCGCY	2 cut(s)	255, 321
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	6, 348
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	3
BpuEI	CTTGAG	2 cut(s)	343, 521
BsaWI	WCCGGW	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	492
BshFI	GGCC	1 cut(s)	613
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	180, 585
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	180, 585
BsnI	GGCC	1 cut(s)	613
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	160, 232, 381, 489
BspACI	CCGC	5 cut(s)	19, 174, 177, 207, 497
BspANI	GGCC	1 cut(s)	613
BspLI	GGNNCC	2 cut(s)	6, 348
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssMI	GATC	4 cut(s)	160, 232, 381, 489
BssSI	CACGAG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	130, 367
BstC8I	GCNNGC	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	2 cut(s)	255, 321
BstHHI	GCGC	2 cut(s)	254, 320
BstKTI	GATC	4 cut(s)	163, 235, 384, 492
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	4 cut(s)	160, 232, 381, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 183
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	256
CfoI	GCGC	2 cut(s)	254, 320
Cfr10I	RCCGGY	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	302
CviAII	CATG	3 cut(s)	236, 338, 484
CviJI	RGCY	7 cut(s)	74, 84, 299, 436, 613, 625, 665
CviKI_1	RGCY	7 cut(s)	74, 84, 299, 436, 613, 625, 665
DpnI	GATC	4 cut(s)	162, 234, 383, 491
DpnII	GATC	4 cut(s)	160, 232, 381, 489
EaeI	YGGCCR	1 cut(s)	611
Ecl136II	GAGCTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	86
Eco47III	AGCGCT	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	3 cut(s)	239, 341, 487
FaiI	YATR	9 cut(s)	39, 51, 237, 339, 468, 485, 586, 590, 638
FaqI	GGGAC	2 cut(s)	180, 585
FatI	CATG	3 cut(s)	235, 337, 483
FbaI	TGATCA	2 cut(s)	160, 232
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	437, 626
GlaI	GCGC	2 cut(s)	253, 319
GluI	GCNGC	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	255, 321
HaeIII	GGCC	1 cut(s)	613
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	2 cut(s)	254, 320
Hin1II	CATG	3 cut(s)	239, 341, 487
Hin6I	GCGC	2 cut(s)	252, 318
HinP1I	GCGC	2 cut(s)	252, 318
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	520, 538
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	24, 304
HpyCH4III	ACNGT	2 cut(s)	130, 367
HpyCH4V	TGCA	5 cut(s)	16, 428, 548, 588, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 183
Hsp92II	CATG	3 cut(s)	239, 341, 487
HspAI	GCGC	2 cut(s)	252, 318
Ksp22I	TGATCA	2 cut(s)	160, 232
Kzo9I	GATC	4 cut(s)	160, 232, 381, 489
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	5 cut(s)	172, 316, 392, 419, 654
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	2 cut(s)	437, 626
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	4 cut(s)	162, 234, 383, 491
MboI	GATC	4 cut(s)	160, 232, 381, 489
MboII	GAAGA	6 cut(s)	156, 376, 454, 457, 503, 683
MfeI	CAATTG	2 cut(s)	504, 615
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	4 cut(s)	504, 542, 565, 615
MluNI	TGGCCA	1 cut(s)	613
MnlI	CCTC	6 cut(s)	331, 337, 360, 367, 523, 552
Mox20I	TGGCCA	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	590
MroXI	GAANNNNTTC	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	2 cut(s)	24, 201
MslI	CAYNNNNRTG	2 cut(s)	395, 497
Msp20I	TGGCCA	1 cut(s)	613
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	2 cut(s)	504, 615
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	122, 183
NdeII	GATC	4 cut(s)	160, 232, 381, 489
NlaIII	CATG	3 cut(s)	239, 341, 487
NlaIV	GGNNCC	2 cut(s)	6, 348
NmuCI	GTSAC	1 cut(s)	499
NsiI	ATGCAT	1 cut(s)	590
OliI	CACNNNNGTG	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	6, 348
RseI	CAYNNNNRTG	2 cut(s)	395, 497
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	24, 201
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	4 cut(s)	160, 232, 381, 489
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	9 cut(s)	86, 191, 352, 411, 438, 534, 563, 643, 667
SfaNI	GCATC	1 cut(s)	3
SgrAI	CRCCGGYG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	395, 497
SmlI	CTYRAG	2 cut(s)	358, 536
SmoI	CTYRAG	2 cut(s)	358, 536
Sse9I	AATT	4 cut(s)	504, 542, 565, 615
SsiI	CCGC	5 cut(s)	19, 174, 177, 207, 497
SspMI	CTAG	2 cut(s)	437, 626
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	130, 367
TaqI	TCGA	1 cut(s)	669
TasI	AATT	4 cut(s)	504, 542, 565, 615
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	24, 201
Tru9I	TTAA	2 cut(s)	24, 201
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	472
XapI	RAATTY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	437, 626
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.