Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

62223300 .. 62223785

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACGTCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACTGTTCTCTTGATCTTACAATTCAGAGGCAAAGCAATCTTCAATGTCATAGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCGAGATCTTTAATGAGTTCAATGCAAGAAAGCTAGAGAAGAAAAATGTCTTCAAGGGAATACACATCAACAAGTTGTTAATGGGGATCATTGCGGTGACAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATTGGGATTGCAGTCGTCTCTTGGCCAATTGGTTGGCTAATCAAGTGTATACCTGTTCCAGAGAAACCCATATTCAGCTATCTGAAGATGAAGAAAAAATTAGCATTCTGTTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

162

Amino Acids

18.51

Weight (kDa)

9.86

Isoelectric Point (pI)

19.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	1 - 138	9.3e-31	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	275, 470
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	130, 166, 202, 235, 343, 481
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	2 cut(s)	214, 444
AluI	AGCT	2 cut(s)	214, 444
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	223
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	32
BglII	AGATCT	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	54, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	99, 159, 186, 267
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	4 cut(s)	99, 159, 186, 267
BssNAI	GTATAC	1 cut(s)	416
Bst1107I	GTATAC	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	78, 91
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	4 cut(s)	102, 162, 189, 270
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	99, 159, 186, 267
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	186
BstZ17I	GTATAC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	21, 74
CfoI	GCGC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	5 cut(s)	10, 214, 391, 403, 444
CviKI_1	RGCY	5 cut(s)	10, 214, 391, 403, 444
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	4 cut(s)	101, 161, 188, 269
DpnII	GATC	4 cut(s)	99, 159, 186, 267
EaeI	YGGCCR	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	275, 470
EcoT22I	ATGCAT	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	50, 137, 364, 416, 437
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	415
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	113, 450
Hpy188III	TCNNGA	3 cut(s)	97, 316, 425
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	15
HpyCH4III	ACNGT	2 cut(s)	78, 91
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	206, 326, 366, 377
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	4 cut(s)	99, 159, 186, 267
LpnPI	CCDG	5 cut(s)	27, 95, 278, 432, 438
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	4 cut(s)	101, 161, 188, 269
MboI	GATC	4 cut(s)	99, 159, 186, 267
MboII	GAAGA	7 cut(s)	118, 154, 223, 232, 281, 463, 469
MfeI	CAATTG	2 cut(s)	282, 393
MflI	RGATCY	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	6 cut(s)	107, 282, 320, 343, 393, 464
MluNI	TGGCCA	1 cut(s)	391
MnlI	CCTC	7 cut(s)	42, 48, 71, 78, 107, 301, 330
Mox20I	TGGCCA	1 cut(s)	391
Mph1103I	ATGCAT	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	2 cut(s)	192, 260
MslI	CAYNNNNRTG	2 cut(s)	173, 275
Msp20I	TGGCCA	1 cut(s)	391
MunI	CAATTG	2 cut(s)	282, 393
Mva1269I	GAATGC	1 cut(s)	470
NdeII	GATC	4 cut(s)	99, 159, 186, 267
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	277
NsiI	ATGCAT	1 cut(s)	368
OliI	CACNNNNGTG	1 cut(s)	173
PctI	GAATGC	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	173, 275
SaqAI	TTAA	2 cut(s)	192, 260
Sau3AI	GATC	4 cut(s)	99, 159, 186, 267
SetI	ASST	9 cut(s)	48, 63, 147, 216, 297, 312, 341, 421, 446
SmiMI	CAYNNNNRTG	2 cut(s)	173, 275
SmlI	CTYRAG	2 cut(s)	69, 314
SmoI	CTYRAG	2 cut(s)	69, 314
Sse9I	AATT	6 cut(s)	107, 282, 320, 343, 393, 464
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	78, 91
TaiI	ACGT	1 cut(s)	48
TasI	AATT	6 cut(s)	107, 282, 320, 343, 393, 464
Tru1I	TTAA	2 cut(s)	192, 260
Tru9I	TTAA	2 cut(s)	192, 260
TscAI	CASTG	2 cut(s)	21, 81
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	2 cut(s)	21, 81
XapI	RAATTY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.