Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

52662573 .. 52663083

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1425600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGAAAGTTAATGTAATTAACGTGATGGCGAGGTCTTCGACATTTGATAAGCTTCTTATGGTGCAGTGCTTGAAACAAAAAGGCTATGTAGTTGTTGTGACAGTTGTTGGCAAGAATGATGTGCCCACACTTAAAGAAGTTGACATAGGACTCTCGATGGGGATTCAGAGCACTGAAGTTGCCAAGGAGAGCTCAGACTTTGTCATCTTAGATGACAAATTTGCAACTTTGCGGGCCTCAGCCGGTGAAGTACCATTAATAGTGGTCCAGCTGCTGTGGATGAATCTGATTATGGACACAATGGCTGCTCAAGCTCTCATCACAGATAAGCCTGCCAAAGAGATCATAGAGAGGCCACTCGTGGGTCCAACAGTGATCACCAACATCGTATGGATGAACCTTCTACCTCAAGCTTCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

142

Amino Acids

15.49

Weight (kDa)

5.37

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	85 - 136	1.8e-09	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	5 cut(s)	55, 195, 274, 317, 416
AluI	AGCT	5 cut(s)	55, 195, 274, 317, 416
Alw21I	GWGCWC	2 cut(s)	176, 197
AlwNI	CAGNNNCTG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	237, 356
ApeKI	GCWGC	2 cut(s)	274, 308
ApoI	RAATTY	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	260
AspS9I	GGNCC	3 cut(s)	237, 268, 368
AsuHPI	GGTGA	2 cut(s)	260, 373
AvaII	GGWCC	2 cut(s)	268, 368
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	176, 197
BbvCI	CCTCAGC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	261, 295
BccI	CCATC	2 cut(s)	22, 154
BclI	TGATCA	1 cut(s)	378
BfaI	CTAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	275, 309
BlsI	GCNGC	2 cut(s)	276, 310
Bme18I	GGWCC	2 cut(s)	268, 368
BmgT120I	GGNCC	3 cut(s)	237, 268, 368
BmiI	GGNNCC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	297, 396
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	288, 402
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	210, 255
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	261, 295
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	239, 358
BsiHKAI	GWGCWC	2 cut(s)	176, 197
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	2 cut(s)	239, 358
Bsp1286I	GDGCHC	3 cut(s)	129, 176, 197
Bsp143I	GATC	2 cut(s)	345, 378
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	239, 358
BspCNI	CTCAG	2 cut(s)	209, 254
BspLI	GGNNCC	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	345, 378
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	106, 376
BstC8I	GCNNGC	2 cut(s)	237, 336
BstDEI	CTNAG	3 cut(s)	196, 211, 241
BstF5I	GGATG	2 cut(s)	288, 402
BstKTI	GATC	2 cut(s)	348, 381
BstMBI	GATC	2 cut(s)	345, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	261, 295
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	239, 358
BtsCI	GGATG	2 cut(s)	288, 402
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	74, 174, 381
Cac8I	GCNNGC	2 cut(s)	237, 336
CaiI	CAGNNNCTG	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	245
Cfr13I	GGNCC	3 cut(s)	237, 268, 368
Csp6I	GTAC	1 cut(s)	254
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	196, 211, 241
DpnI	GATC	2 cut(s)	347, 380
DpnII	GATC	2 cut(s)	345, 378
Ecl136II	GAGCTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	268, 368
Eco53kI	GAGCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	186
FaiI	YATR	6 cut(s)	62, 90, 149, 296, 350, 394
FauI	CCCGC	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	275, 309
FokI	GGATG	2 cut(s)	295, 409
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	275, 309
FspBI	CTAG	1 cut(s)	424
GluI	GCNGC	2 cut(s)	275, 309
HaeIII	GGCC	2 cut(s)	239, 358
HapII	CCGG	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	2 cut(s)	53, 414
HinfI	GANTC	3 cut(s)	153, 166, 286
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	2 cut(s)	260, 373
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	171, 199, 291
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	106, 376
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	4, 67, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	196, 211, 241
HpySE526I	ACGT	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	345, 378
LpnPI	CCDG	3 cut(s)	259, 284, 348
Lsp1109I	GCAGC	2 cut(s)	261, 295
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	347, 380
MboI	GATC	2 cut(s)	345, 378
MboII	GAAGA	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	129, 176, 197
MluCI	AATT	2 cut(s)	18, 221
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	27, 250, 348, 420
MseI	TTAA	4 cut(s)	12, 21, 135, 260
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	2 cut(s)	345, 378
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	166, 286
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	2 cut(s)	276, 310
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	3 cut(s)	237, 268, 368
PstNI	CAGNNNCTG	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	12, 21, 135, 260
SatI	GCNGC	2 cut(s)	275, 309
Sau3AI	GATC	2 cut(s)	345, 378
Sau96I	GGNCC	3 cut(s)	237, 268, 368
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	129, 176, 197
SetI	ASST	9 cut(s)	27, 38, 57, 197, 276, 319, 405, 412, 418
SinI	GGWCC	2 cut(s)	268, 368
SmlI	CTYRAG	2 cut(s)	312, 411
SmoI	CTYRAG	2 cut(s)	312, 411
Sse9I	AATT	2 cut(s)	18, 221
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	424
SstI	GAGCTC	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	106, 376
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	41, 158
TasI	AATT	2 cut(s)	18, 221
TfiI	GAWTC	2 cut(s)	166, 286
Tru1I	TTAA	4 cut(s)	12, 21, 135, 260
Tru9I	TTAA	4 cut(s)	12, 21, 135, 260
TscAI	CASTG	3 cut(s)	74, 181, 381
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	274, 308
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	299, 413
TspRI	CASTG	3 cut(s)	74, 181, 381
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	268, 368
VspI	ATTAAT	1 cut(s)	260
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.