Rroxscaffold_5G00335040

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
2527196 .. 2530297
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335040.1

Sequence Viewer

Length: 3102 bp
ATGTCTAGTAGTTCTGCTAGTAACTTGCATGCAAAAGTGTGGAGCATCGAGTTGATCCTAGATGTTCGAAACAAAAGTCTTAACGTGCAGAAGAGAAAGTGGCATTCTGCCTTTGTGGCCATCTACTGCTCTAGAGCCTTCCTCAAACCTCCTGTGCTAAAAGACATCAACATCAACACCAAATTACTATCTCACTCTCCCTCTTACACAACCATTAGTGTTGATGATTCGGTTTCGGTGCCAGACGCTAATGGCTTCAGAATAGACCAGACAAGACTCACTGAGCTTGTGAAGGCAAAAGATCTAAACCAGCTCCATGAGTTGGGAGGGGCTCAAGGTGTTGCAGAAGCACTCGAAACTGATGTCGAGCATGGAATTCATGGCGAAGATGCTGAAGACATTCTCAAGAGAATCGAAGCGTTTGGTTCCAACACGTACGAGAGACCACCAAAAAAAGGCTTCTTACATTTTGTTTGGGAAGCCTTCAAAGACGTTACAATCTTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTGGTTTTGGAATCAAAGAGCATGGATTAAAAGAAGGTTGGATTGACGGTGGAAGCATATGTCTTGCAATCATTCTAGTTATTTCTGTTTCGGCCATAAGCAACTATAGACAGAGCATACAGTTTGACAAATTGTCAAGAGTCAGTAATAATCTCCAGATTGAGGCTGTGAGAAAGGGAAGGCGCCAACAGATTTCGATATTTGATATTGTGGTTGGTGATGTCATTTGTTTGAAGATTGGAGATCAAGTTCCAGCTGATGGATTGCTCCAGGATGGCCATTCTTTATCAGTAGATGAATCAAGCATGACAGGGGAGAGTGACCATGTTGAAATTAGCATTACTCAGAATCCATTCTTATTTTCTGGAACTAAAATTGCTGATGGTTATGGTCGGATGCTTGTCACATCTGTTGGAATGAACACAAATTGGGGTGAAATGATGAGCAAAATCAGCCAGGACACGAGTGAAAAGACGCCTCTACAAGCACGTCTAGACAAGCTAACTTCGTCTATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTAGTTCTTTCAGTCATGTTGGTTCGATACTTCACAGGGAATACGGTGGATGAGAATGGAAGCAAAATGTTCAATGGCAGCAAGACAAAAGTAGATGACATAATAAATGCTATCATTGGAATTGTAGCAGCTGCGGTTACAATTGTTGTAGTAGCAATTCCAGAAGGTCTGCCATTGGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGCTGATAATGCAATGGTACGGAAGCTCTCTGCTTGTGAGACCATGGGGTCTGCTACAACAATTTGTACGGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTGACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTGTGTTCTCGACTTTATTCAAGAAGGGGTTGCTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCAAAAATTGAGATCTCTGGCAGTCCAACTGAAAAGGCTATTCTATCATGGGCGGTTCATGATACAAAGATGGATATGGAAAAAGTGGTGAAGAGTTGTAGCATTCTCCACGTTGAGGCTTTCAATTCACAGAAGAAACGTAGTGGGGTTTTGATTAAGAGGAAGGTGGATAATACAGTCCAAGTACATTTTAAAGGAGCTGCAGAGATGATACTAGCACTGTGTACAAGTTACTATGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGCAGATTATTCAAGGTATGGCAGCCAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTGCAGCAGAGGAGCAAGTTGAAGGAGACCAGAAAGTTGCGCTAAAGGAAGATGGTTTGACCCTATTGGGACTTGTAGGTCTTAAAGATCCATGTCGTCCAGGAGTGAAGAAAGCAGTTGAAGACTGTCAATATGCAGGTGTGAACATCAAAATGATCACTGGCGATAATGTTTTCACCGCAAAAGCCATAGCTACTGAGTGTGGGATACTCGGGCCTGGTCAGGACATGCTCGGAGCAGTCATAGAAGGTGTCAAATTTCGCAACTACACTCCAGAACAGAGAATGGAGAAGGTTGAGGCAATATGTGTAATGGCGAGGTCTTCTCCTTTTGACAAGCTTCTGATGGTACAATGCTTGAAGCAGAAAGGTCATGTAGTTGCAGTGACAGGTGATGGAACCAATGATGCACCAGCATTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGCACAGAAGTTGCTAAAGAGAGCTCGGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGGAGATGTGTGTACAATAATATCCAGAAGTTCATCCAATTCCAGCTCACTGTCAATGTTGCAGCTCTTGTGATCAACTTTGTAGCAGCAGTTTCAGCAGGTCAAGTCCCGTTAACAGCAGTTCAGTTATTGTGGGTGAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAGCCCACAAAAGAACTCATGGAGAAGTCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACGTCATGTGGAGGAACCTCTTGCCTCAAGCATTGTACCAGATAACAGTCCTCTTGATCTTGCAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTTTTCAATGAGTTCAATGCAAGGAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACACACCAACAAGTTGTTTATGGGAATCAGTGCAGCAACAATTATTCTCCAAGTGGTGATGGTGGAGTTTCTTAAGAAATTTGCAGATACAGAGAGATTGAACTGGGGACAATGGGGTATATGCATTGGCATTGCAGTCATCTCTTGGCCAATTGGCTGGGTGTTCAAGTCAATACCTGTTCCAGAGAAATCCTTTCTCAGTTATCTAAAGATGAAGAATTATAAGAGCAACATTTGA

Protein Analysis

1033

Amino Acids

113.11

Weight (kDa)

7.2

Isoelectric Point (pI)

28.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 108 - 177 3.3e-14 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 233 - 327 2.3e-19 P-type ATPase actuator domain
Hydrolase PF00702 451 - 772 1.1e-13 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 491 - 662 1e-28 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 843 - 1012 1.3e-46 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3087
AarI CACCTGC 1 cut(s) 2012
AasI GACNNNNNNGTC 2 cut(s) 1339, 1962
Acc36I ACCTGC 2 cut(s) 2012, 2510
AccB1I GGYRCC 2 cut(s) 238, 714
AccB7I CCANNNNNTGG 2 cut(s) 322, 791
AciI CCGC 3 cut(s) 1208, 1586, 2064
AclWI GGATC 2 cut(s) 49, 1967
AcoI YGGCCR 4 cut(s) 117, 624, 808, 3011
AcsI RAATTY 3 cut(s) 375, 2141, 2942
AcuI CTGAAG 3 cut(s) 241, 414, 2382
AcyI GRCGYC 2 cut(s) 715, 1007
AfiI CCNNNNNNNGG 6 cut(s) 322, 455, 694, 791, 1396, 1648
AflII CTTAAG 1 cut(s) 2936
AflIII ACRYGT 1 cut(s) 432
AhdI GACNNNNNGTC 1 cut(s) 664
AjiI CACGTC 1 cut(s) 1022
AjnI CCWGG 5 cut(s) 801, 987, 1984, 2101, 2805
AleI CACNNNNGTG 1 cut(s) 2795
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
Alw21I GWGCWC 2 cut(s) 2366, 2587
Alw26I GTCTC 3 cut(s) 436, 1325, 1905
AlwI GGATC 2 cut(s) 49, 1967
Ama87I CYCGRG 1 cut(s) 2096
AoxI GGCC 6 cut(s) 117, 624, 808, 1520, 2099, 3011
ApoI RAATTY 3 cut(s) 375, 2141, 2942
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 348, 380
Asp700I GAANNNNTTC 3 cut(s) 399, 884, 2852
AspLEI GCGC 4 cut(s) 526, 717, 1927, 2653
AspS9I GGNCC 1 cut(s) 2099
AsuHPI GGTGA 9 cut(s) 761, 977, 1411, 1633, 2053, 2288, 2569, 2625, 2932
AsuII TTCGAA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 2096
BalI TGGCCA 3 cut(s) 119, 810, 3013
BanI GGYRCC 2 cut(s) 238, 714
BanII GRGCYC 3 cut(s) 334, 2366, 2587
BauI CACGAG 1 cut(s) 994
BbsI GAAGAC 4 cut(s) 402, 2013, 2199, 2845
Bbv12I GWGCWC 2 cut(s) 2366, 2587
BcgI CGANNNNNNTGC 2 cut(s) 1852, 1886
BciT130I CCWGG 5 cut(s) 803, 989, 1986, 2103, 2807
BciVI GTATCC 1 cut(s) 2085
BclI TGATCA 4 cut(s) 2040, 2376, 2493, 2565
BcoDI GTCTC 3 cut(s) 436, 1325, 1905
BfaI CTAG 9 cut(s) 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
BfmI CTRYAG 4 cut(s) 637, 1044, 1734, 2406
BfoI RGCGCY 2 cut(s) 718, 2654
BfrI CTTAAG 1 cut(s) 2936
BfuAI ACCTGC 2 cut(s) 2012, 2510
BfuI GTATCC 1 cut(s) 2085
BglI GCCNNNNNGGC 1 cut(s) 116
BglII AGATCT 2 cut(s) 301, 1545
Bme1390I CCNGG 5 cut(s) 803, 989, 1986, 2103, 2807
BmeRI GACNNNNNGTC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 2096
BmgBI CACGTC 1 cut(s) 1022
BmgT120I GGNCC 1 cut(s) 2099
BmiI GGNNCC 5 cut(s) 240, 427, 716, 2284, 2681
BmrFI CCNGG 5 cut(s) 803, 989, 1986, 2103, 2807
BmrI ACTGGG 1 cut(s) 2977
BmsI GCATC 7 cut(s) 54, 379, 918, 1762, 1850, 1872, 2281
BmuI ACTGGG 1 cut(s) 2977
BpiI GAAGAC 4 cut(s) 402, 2013, 2199, 2845
BplI GAGNNNNNCTC 4 cut(s) 126, 158, 2194, 2226
BpmI CTGGAG 3 cut(s) 671, 785, 2142
Bpu14I TTCGAA 1 cut(s) 67
BpuEI CTTGAG 3 cut(s) 318, 389, 2676
BsaAI YACGTR 1 cut(s) 435
BsaHI GRCGYC 2 cut(s) 715, 1007
BsaI GGTCTC 3 cut(s) 436, 1325, 1905
BsaJI CCNNGG 1 cut(s) 1335
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 322, 455, 694, 791, 1396, 1648
Bse1I ACTGG 4 cut(s) 1510, 2050, 2636, 2972
Bse3DI GCAATG 2 cut(s) 1311, 2994
BseBI CCWGG 5 cut(s) 803, 989, 1986, 2103, 2807
BseDI CCNNGG 1 cut(s) 1335
BseGI GGATG 6 cut(s) 521, 811, 933, 1129, 2389, 2454
BseLI CCNNNNNNNGG 6 cut(s) 322, 455, 694, 791, 1396, 1648
BseMI GCAATG 2 cut(s) 1311, 2994
BseMII CTCAG 5 cut(s) 273, 890, 1870, 2073, 3076
BseNI ACTGG 4 cut(s) 1510, 2050, 2636, 2972
BseRI GAGGAG 1 cut(s) 1910
BseYI CCCAGC 1 cut(s) 3021
BsgI GTGCAG 2 cut(s) 107, 2916
BshFI GGCC 6 cut(s) 119, 626, 810, 1522, 2101, 3013
BshNI GGYRCC 2 cut(s) 238, 714
BsiHKAI GWGCWC 2 cut(s) 2366, 2587
BsiHKCI CYCGRG 1 cut(s) 2096
BsiWI CGTACG 1 cut(s) 435
BslFI GGGAC 3 cut(s) 1968, 2513, 2985
BslI CCNNNNNNNGG 6 cut(s) 322, 455, 694, 791, 1396, 1648
BsmAI GTCTC 3 cut(s) 436, 1325, 1905
BsmFI GGGAC 3 cut(s) 1968, 2513, 2985
BsmI GAATGC 3 cut(s) 103, 1635, 1868
BsnI GGCC 6 cut(s) 119, 626, 810, 1522, 2101, 3013
Bso31I GGTCTC 3 cut(s) 436, 1325, 1905
BsoBI CYCGRG 1 cut(s) 2096
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 3 cut(s) 334, 2366, 2587
Bsp1407I TGTACA 3 cut(s) 1515, 1757, 2433
Bsp19I CCATGG 1 cut(s) 1335
BspACI CCGC 3 cut(s) 1208, 1586, 2064
BspANI GGCC 6 cut(s) 119, 626, 810, 1522, 2101, 3013
BspCNI CTCAG 5 cut(s) 274, 889, 1869, 2074, 3075
BspHI TCATGA 1 cut(s) 1591
BspLI GGNNCC 5 cut(s) 240, 427, 716, 2284, 2681
BspMAI CTGCAG 1 cut(s) 1738
BspMI ACCTGC 2 cut(s) 2012, 2510
BspPI GGATC 2 cut(s) 49, 1967
BspT104I TTCGAA 1 cut(s) 67
BspT107I GGYRCC 2 cut(s) 238, 714
BspTI CTTAAG 1 cut(s) 2936
BspTNI GGTCTC 3 cut(s) 436, 1325, 1905
BsrDI GCAATG 2 cut(s) 1311, 2994
BsrGI TGTACA 3 cut(s) 1515, 1757, 2433
BsrI ACTGG 4 cut(s) 1510, 2050, 2636, 2972
BssECI CCNNGG 1 cut(s) 1335
BssNI GRCGYC 2 cut(s) 715, 1007
BssSI CACGAG 1 cut(s) 994
BssT1I CCWWGG 1 cut(s) 1335
Bst2BI CACGAG 1 cut(s) 994
Bst2UI CCWGG 5 cut(s) 803, 989, 1986, 2103, 2807
Bst4CI ACNGT 9 cut(s) 581, 654, 1120, 1711, 1755, 2012, 2410, 2473, 2713
Bst6I CTCTTC 3 cut(s) 86, 1277, 1619
BstACI GRCGYC 2 cut(s) 715, 1007
BstAFI CTTAAG 1 cut(s) 2936
BstAUI TGTACA 3 cut(s) 1515, 1757, 2433
BstBAI YACGTR 1 cut(s) 435
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 30, 1849
BstDEI CTNAG 7 cut(s) 282, 876, 1075, 1404, 1856, 2082, 3062
BstDSI CCRYGG 1 cut(s) 1335
BstF5I GGATG 6 cut(s) 521, 811, 933, 1129, 2389, 2454
BstH2I RGCGCY 2 cut(s) 718, 2654
BstHHI GCGC 4 cut(s) 526, 717, 1927, 2653
BstMAI GTCTC 3 cut(s) 436, 1325, 1905
BstMWI GCNNNNNNNGC 6 cut(s) 116, 984, 1301, 1860, 2402, 2516
BstNI CCWGG 5 cut(s) 803, 989, 1986, 2103, 2807
BstNSI RCATGY 2 cut(s) 32, 2116
BstSCI CCNGG 5 cut(s) 801, 987, 1984, 2101, 2805
BstSFI CTRYAG 4 cut(s) 637, 1044, 1734, 2406
BstV2I GAAGAC 4 cut(s) 402, 2013, 2199, 2845
BstX2I RGATCY 3 cut(s) 301, 1545, 1972
BstXI CCANNNNNNTGG 1 cut(s) 3021
BstYI RGATCY 3 cut(s) 301, 1545, 1972
BsuI GTATCC 1 cut(s) 2085
BsuRI GGCC 6 cut(s) 119, 626, 810, 1522, 2101, 3013
BtgI CCRYGG 1 cut(s) 1335
BtgZI GCGATG 1 cut(s) 1849
BtrI CACGTC 1 cut(s) 1022
BtsCI GGATG 6 cut(s) 521, 811, 933, 1129, 2389, 2454
BtsI GCAGTG 1 cut(s) 2274
BtsIMutI CAGTG 8 cut(s) 279, 1751, 2043, 2274, 2469, 2643, 2764, 2899
BveI ACCTGC 2 cut(s) 2012, 2510
Cac8I GCNNGC 2 cut(s) 30, 1849
CciI TCATGA 1 cut(s) 1591
CfoI GCGC 4 cut(s) 526, 717, 1927, 2653
Cfr13I GGNCC 1 cut(s) 2099
CseI GACGC 2 cut(s) 254, 1015
DdeI CTNAG 7 cut(s) 282, 876, 1075, 1404, 1856, 2082, 3062
DinI GGCGCC 1 cut(s) 716
DraI TTTAAA 1 cut(s) 1726
DrdI GACNNNNNNGTC 2 cut(s) 1339, 1962
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 2 cut(s) 1339, 1962
EaeI YGGCCR 4 cut(s) 117, 624, 808, 3011
Eam1104I CTCTTC 3 cut(s) 86, 1277, 1619
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 3 cut(s) 86, 1277, 1619
Ecl136II GAGCTC 2 cut(s) 2364, 2585
Eco130I CCWWGG 1 cut(s) 1335
Eco147I AGGCCT 1 cut(s) 1522
Eco24I GRGCYC 3 cut(s) 334, 2366, 2587
Eco31I GGTCTC 3 cut(s) 436, 1325, 1905
Eco53kI GAGCTC 2 cut(s) 2364, 2585
Eco57I CTGAAG 3 cut(s) 241, 414, 2382
Eco88I CYCGRG 1 cut(s) 2096
EcoICRI GAGCTC 2 cut(s) 2364, 2585
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 5 cut(s) 801, 987, 1984, 2101, 2805
EcoT14I CCWWGG 1 cut(s) 1335
EcoT22I ATGCAT 2 cut(s) 1865, 2990
EcoT38I GRGCYC 3 cut(s) 334, 2366, 2587
EgeI GGCGCC 1 cut(s) 716
EheI GGCGCC 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 1335
FalI AAGNNNNNCTT 2 cut(s) 2837, 2869
FaqI GGGAC 3 cut(s) 1968, 2513, 2985
FauNDI CATATG 1 cut(s) 590
FbaI TGATCA 4 cut(s) 2040, 2376, 2493, 2565
FokI GGATG 6 cut(s) 528, 818, 940, 1136, 2396, 2441
FriOI GRGCYC 3 cut(s) 334, 2366, 2587
FspBI CTAG 9 cut(s) 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
GlaI GCGC 4 cut(s) 525, 716, 1926, 2652
GsaI CCCAGC 1 cut(s) 3025
GsuI CTGGAG 3 cut(s) 671, 785, 2142
HaeII RGCGCY 2 cut(s) 718, 2654
HaeIII GGCC 6 cut(s) 119, 626, 810, 1522, 2101, 3013
HgaI GACGC 2 cut(s) 254, 1015
HhaI GCGC 4 cut(s) 526, 717, 1927, 2653
Hin1I GRCGYC 2 cut(s) 715, 1007
Hin6I GCGC 4 cut(s) 524, 715, 1925, 2651
HinP1I GCGC 4 cut(s) 524, 715, 1925, 2651
HincII GTYRAC 1 cut(s) 2535
HindII GTYRAC 1 cut(s) 2535
HindIII AAGCTT 2 cut(s) 1440, 2222
HpaI GTTAAC 1 cut(s) 2535
HphI GGTGA 9 cut(s) 761, 977, 1411, 1633, 2053, 2288, 2569, 2625, 2932
Hpy166II GTNNAC 6 cut(s) 1516, 1758, 2029, 2434, 2535, 2560
Hpy188I TCNGA 8 cut(s) 260, 879, 927, 1380, 1859, 2120, 2229, 2368
Hpy8I GTNNAC 6 cut(s) 1516, 1758, 2029, 2434, 2535, 2560
HpyCH4III ACNGT 9 cut(s) 581, 654, 1120, 1711, 1755, 2012, 2410, 2473, 2713
HpyCH4IV ACGT 7 cut(s) 84, 434, 492, 1021, 1644, 1672, 2667
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 984, 1301, 1860, 2402, 2516
HpyF3I CTNAG 7 cut(s) 282, 876, 1075, 1404, 1856, 2082, 3062
HpySE526I ACGT 7 cut(s) 84, 434, 492, 1021, 1644, 1672, 2667
Hsp92I GRCGYC 2 cut(s) 715, 1007
HspAI GCGC 4 cut(s) 524, 715, 1925, 2651
KasI GGCGCC 1 cut(s) 714
Ksp22I TGATCA 4 cut(s) 2040, 2376, 2493, 2565
KspAI GTTAAC 1 cut(s) 2535
LmnI GCTCC 7 cut(s) 42, 318, 804, 1730, 1897, 2120, 2582
LweI GCATC 7 cut(s) 54, 379, 918, 1762, 1850, 1872, 2281
MaeI CTAG 9 cut(s) 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
MaeII ACGT 7 cut(s) 84, 434, 492, 1021, 1644, 1672, 2667
MfeI CAATTG 2 cut(s) 1215, 3015
MflI RGATCY 3 cut(s) 301, 1545, 1972
MhlI GDGCHC 3 cut(s) 334, 2366, 2587
MlsI TGGCCA 3 cut(s) 119, 810, 3013
MluNI TGGCCA 3 cut(s) 119, 810, 3013
Mly113I GGCGCC 1 cut(s) 715
MlyI GAGTC 3 cut(s) 270, 681, 1252
MmeI TCCRAC 5 cut(s) 453, 551, 905, 925, 1583
Mox20I TGGCCA 3 cut(s) 119, 810, 3013
Mph1103I ATGCAT 2 cut(s) 1865, 2990
MroXI GAANNNNTTC 3 cut(s) 399, 884, 2852
MscI TGGCCA 3 cut(s) 119, 810, 3013
MseI TTAA 9 cut(s) 81, 503, 560, 1689, 1725, 1788, 1968, 2534, 2937
MslI CAYNNNNRTG 2 cut(s) 2036, 2795
Msp20I TGGCCA 3 cut(s) 119, 810, 3013
MspA1I CMGCKG 2 cut(s) 788, 1205
MspCI CTTAAG 1 cut(s) 2936
MspR9I CCNGG 5 cut(s) 803, 989, 1986, 2103, 2807
MunI CAATTG 2 cut(s) 1215, 3015
Mva1269I GAATGC 3 cut(s) 103, 1635, 1868
MvaI CCWGG 5 cut(s) 803, 989, 1986, 2103, 2807
MwoI GCNNNNNNNGC 6 cut(s) 116, 984, 1301, 1860, 2402, 2516
NarI GGCGCC 1 cut(s) 715
NcoI CCATGG 1 cut(s) 1335
NdeI CATATG 1 cut(s) 590
NlaIV GGNNCC 5 cut(s) 240, 427, 716, 2284, 2681
NmuCI GTSAC 6 cut(s) 851, 934, 1255, 1399, 2269, 2631
NsiI ATGCAT 2 cut(s) 1865, 2990
NspI RCATGY 2 cut(s) 32, 2116
NspV TTCGAA 1 cut(s) 67
OliI CACNNNNGTG 1 cut(s) 2795
PaeI GCATGC 1 cut(s) 32
PagI TCATGA 1 cut(s) 1591
PaqCI CACCTGC 1 cut(s) 2012
PceI AGGCCT 1 cut(s) 1522
PctI GAATGC 3 cut(s) 103, 1635, 1868
PdmI GAANNNNTTC 3 cut(s) 399, 884, 2852
PfeI GAWTC 9 cut(s) 227, 411, 543, 830, 880, 1424, 1532, 2335, 2889
Pfl23II CGTACG 1 cut(s) 435
PflMI CCANNNNNTGG 2 cut(s) 322, 791
PfoI TCCNGGA 2 cut(s) 801, 1984
PleI GAGTC 3 cut(s) 270, 680, 1252
PluTI GGCGCC 1 cut(s) 718
PpsI GAGTC 3 cut(s) 270, 680, 1252
Ppu21I YACGTR 1 cut(s) 435
PsiI TTATAA 1 cut(s) 3087
Psp124BI GAGCTC 2 cut(s) 2366, 2587
Psp6I CCWGG 5 cut(s) 801, 987, 1984, 2101, 2805
PspFI CCCAGC 1 cut(s) 3021
PspGI CCWGG 5 cut(s) 801, 987, 1984, 2101, 2805
PspLI CGTACG 1 cut(s) 435
PspN4I GGNNCC 5 cut(s) 240, 427, 716, 2284, 2681
PspPI GGNCC 1 cut(s) 2099
PstI CTGCAG 1 cut(s) 1738
PsuI RGATCY 3 cut(s) 301, 1545, 1972
PvuII CAGCTG 2 cut(s) 788, 1205
RseI CAYNNNNRTG 2 cut(s) 2036, 2795
SacI GAGCTC 2 cut(s) 2366, 2587
SaqAI TTAA 9 cut(s) 81, 503, 560, 1689, 1725, 1788, 1968, 2534, 2937
Sau96I GGNCC 1 cut(s) 2099
SchI GAGTC 3 cut(s) 270, 681, 1252
ScrFI CCNGG 5 cut(s) 803, 989, 1986, 2103, 2807
SduI GDGCHC 3 cut(s) 334, 2366, 2587
SfaNI GCATC 7 cut(s) 54, 379, 918, 1762, 1850, 1872, 2281
SfcI CTRYAG 4 cut(s) 637, 1044, 1734, 2406
SfoI GGCGCC 1 cut(s) 716
SfuI TTCGAA 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 2036, 2795
SmlI CTYRAG 4 cut(s) 333, 404, 2691, 2936
SmoI CTYRAG 4 cut(s) 333, 404, 2691, 2936
SphI GCATGC 1 cut(s) 32
SseBI AGGCCT 1 cut(s) 1522
SsiI CCGC 3 cut(s) 1208, 1586, 2064
SspDI GGCGCC 1 cut(s) 714
SspMI CTAG 9 cut(s) 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
SstI GAGCTC 2 cut(s) 2366, 2587
StuI AGGCCT 1 cut(s) 1522
StyD4I CCNGG 5 cut(s) 801, 987, 1984, 2101, 2805
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 9 cut(s) 581, 654, 1120, 1711, 1755, 2012, 2410, 2473, 2713
TaiI ACGT 7 cut(s) 87, 437, 495, 1024, 1647, 1675, 2670
TaqI TCGA 8 cut(s) 48, 67, 354, 366, 414, 728, 1099, 1470
TatI WGTACW 4 cut(s) 1515, 1717, 1757, 2433
TfiI GAWTC 9 cut(s) 227, 411, 543, 830, 880, 1424, 1532, 2335, 2889
Tru1I TTAA 9 cut(s) 81, 503, 560, 1689, 1725, 1788, 1968, 2534, 2937
Tru9I TTAA 9 cut(s) 81, 503, 560, 1689, 1725, 1788, 1968, 2534, 2937
TscAI CASTG 8 cut(s) 286, 1758, 2050, 2274, 2476, 2643, 2764, 2899
TseFI GTSAC 6 cut(s) 851, 934, 1255, 1399, 2269, 2631
Tsp45I GTSAC 6 cut(s) 851, 934, 1255, 1399, 2269, 2631
TspGWI ACGGA 2 cut(s) 1327, 1376
TspRI CASTG 8 cut(s) 286, 1758, 2050, 2274, 2476, 2643, 2764, 2899
Van91I CCANNNNNTGG 2 cut(s) 322, 791
Vha464I CTTAAG 1 cut(s) 2936
XapI RAATTY 3 cut(s) 375, 2141, 2942
XbaI TCTAGA 2 cut(s) 131, 1024
XceI RCATGY 2 cut(s) 32, 2116
XmnI GAANNNNTTC 3 cut(s) 399, 884, 2852
XspI CTAG 9 cut(s) 6, 18, 59, 132, 608, 1025, 1524, 1748, 2837
Zsp2I ATGCAT 2 cut(s) 1865, 2990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.