RLG00000003378

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
47785283 .. 47788381
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003378

Sequence Viewer

Length: 3099 bp
ATGTCTAGTTCTACTAGTAAATTGCATGCAAAAGTATGGAGCATCGAGTTGATCCTAGATGTTCGAAACAAAAGTCTCAACGTGCAGAAGAGAAAGTGGCATTCTGCTTTTGTGGCCATCTACTGCTCTAGAGCCTTCCTCTCTTTATTCAAACCTCCTGTGCTGAAAGACATAAACACCAAATTACTATCTCCCTCTCCCTCTTACACAACCATTAGTGTTGATGATTCAGTTTCAGTGCCAGACGTTAATGGCTTCCGAGTAGACCAAGCAAGACTCACTAAGCTTGTGAAGGCGAAAGATCTAAACCAGCTCCAGCTGTTGGGAGGGGTTCAAGGTGTAGCAGAAGCACTTGAAACTGATGTAGAGCATGGAATTCACGGAGAAGATGCTGAAGACATTCTCAAGAGAATCGAAGCGTTTGGTTCCAACACATACAAGAGACCACCAAAAAAAAACTTCTTCCATTTTGTTTGGGAAGCCTTCAAAGACCTCACAATCTTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTGGTTTTGGAATCAAAGAGCATGGATTAAAAGAAGGTTGGATTGACGGTGGAAGCATATGTCTTGCAATCATTCTAGTTATTTCTGTTTCGGCCATAAGCAACTATAGACAGAGCATACAGTTTGACAAATTGTCAAAAGTCAGTAATAATCTCCAGATTGAGGCTGTGAGAAAGGGAAGGCGCCAACAGATTTCAATATTTGATATTGTGGTTGGTGATGTCATTTGTTTGAAGATTGGAGATCAAGTTCCAGCTGATGGATTGCTTCTGGATGGACATTCTTTATCAGTAGATGAATCATGCATGACAGGGGAGAGTGACCATGTTGATATTAGCATTACTCAGAATCCATTCTTATTTTCTGGAACTAAAATTGCTGATGGTTATGGTCGGATGCTTGTCACATCTGTTGGGATGAACACAAATTGGGGTGAAATGATGAGCAAAATCAGCCAGGACACGAGTGAAAAGACGCCTCTACAAGCACGTCTAGACAAGCTAACTTCTTCGATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTAGTTCTTTCAGTCATGTTGGTTCGATACTTCACAGGGAATACCGTGGGTGAGAATGGAAGCAAAATGTTCAATGGCAGCAAGACAAAAGTAGATGACATAATAAATGCTATCATTGGAATTGTAGCAGCTGCGGTTACAATTGTTGTAGTAGCAATTCCAGAAGGTCTGCCATTGGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGCTGATAATGCAATGGTACGGAAGCTCTCTGCTTGTGAGACCATGGGGTCTGCTACAACAATTTGTACAGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTGACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGCTTATTCATCTATTTCTCCTTGTGTTCTCGACTTCATTCAAGAAGGGGTTGCTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCAAAAATTGAGATCTCTGGCAGTCCAACTGAAAAGGCTATTCTATCATGGGCGGTTCATGATACAAGGATGGATATGGAGAAAGTGGTGAAGAGTTGTAGCATTCTCCATGTTGAGGCTTTCAATTCACAGAAGAAACATAGTGGGGTTTTGATTAAGAGGAAGGCGGATAATACAGTCCAAGTACATTTTAAAGGAGCTGCAGAGATGATACTAGCAATGTGTACAAGTTACTATGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGAAGATTATTCAAGGTATGGCAGCCAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTGCAGCAGAGGAGCAAGTTGAAGGAGACCAGAAAGTTGTGCTGAAGGAAGATGGTTTGACCCTATTGGGACTTGTAGGTCTTAAAGATCCATGTCGTCCAGGAGTGAAGAAAGCAGTTGAAGACTGTCAATATGCAGGTGTGAACATCAAAATGATCACTGGCGATAATGTTTTCACTGCAAAAGCCATAGCTACTGAGTGTGGGATACTCAGGCCTGGTCAGAACACGCTCGGAGCAGTCATAGAAGGTGTCGAATTTCGCAACTACACTCCAGAACAGAGAATGGAGAAGGTTGAGTCAATATGTGTAATGGCAAGGTCTTCTCCTTTTGATAAGCTTCTGATGGTACAATGCTTGAAGCAGAAAGGTCATGTAGTTGCAGTGACAGGTGATGGAACCAATGATGCACCAGCATTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGCACAGAAGTTGCTAAAGAGAGCTCGGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATCCAATTCCAGCTCACTGTCAATGTTGCAGCTCTTTTGATCAACTTTGTAGCCGCAGTTTCAGCAGGTAAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTAAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAGCCCACAAAAGAACTCATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTGATCACAAACGTCATGTGGAGGAACCTCTTGCCTCAAGCATTGTACCAGATAACAGTCCTCTTGATCTTGCAATTCAGGGGCAAAGCAATCTTTGGTGTGACTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTTTTCAATGAGTTCAATGCGAGGAAGCTAGAGAAGAAGAATGTCTTTAAGGGAATACACACCAATAAGTTATTTATGGGAATCATTGCAGCAACAATTATTCTCCAAGTGGTGATGGTGGAGTTTCTAAAGAAATTTGCAGATACAGAGAGATTGAACTGGGGACAATGGGGTATATGCATTGGCATTGCAGTCATCTCTTGGCCAATTGGGTGGGTGTTCAAGTCAATACCTGTTCCAGAGAAATCCTTTCTCAGTTATCTAAAGATGAAGAATTATAAGAGCAACATTTGA

Protein Analysis

1033

Amino Acids

113.18

Weight (kDa)

8.53

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 109 - 177 2.3e-14 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 233 - 327 1.7e-19 P-type ATPase actuator domain
Hydrolase PF00702 451 - 771 2.8e-14 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 490 - 661 8.3e-28 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 842 - 1011 6.2e-48 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3084
AarI CACCTGC 1 cut(s) 2009
AasI GACNNNNNNGTC 2 cut(s) 1339, 1959
Acc36I ACCTGC 2 cut(s) 2009, 2507
AccB1I GGYRCC 1 cut(s) 714
AccB7I CCANNNNNTGG 2 cut(s) 322, 791
AccI GTMKAC 1 cut(s) 264
AciI CCGC 4 cut(s) 1208, 1583, 1697, 2505
AclWI GGATC 2 cut(s) 46, 1964
AcoI YGGCCR 3 cut(s) 114, 624, 3008
AcsI RAATTY 3 cut(s) 375, 2138, 2939
AcuI CTGAAG 3 cut(s) 414, 1946, 2379
AcyI GRCGYC 2 cut(s) 715, 1007
AfaI GTAC 9 cut(s) 1311, 1360, 1375, 1514, 1716, 1756, 2232, 2432, 2699
AfiI CCNNNNNNNGG 6 cut(s) 322, 694, 791, 1396, 1645, 2636
AhdI GACNNNNNGTC 1 cut(s) 664
AhlI ACTAGT 1 cut(s) 14
AjiI CACGTC 1 cut(s) 1022
AjnI CCWGG 4 cut(s) 987, 1981, 2098, 2802
AleI CACNNNNGTG 1 cut(s) 2792
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
Alw21I GWGCWC 2 cut(s) 2363, 2584
Alw26I GTCTC 4 cut(s) 80, 436, 1325, 1902
AlwI GGATC 2 cut(s) 46, 1964
AoxI GGCC 5 cut(s) 114, 624, 1517, 2096, 3008
ApoI RAATTY 3 cut(s) 375, 2138, 2939
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
Asp700I GAANNNNTTC 2 cut(s) 399, 884
AspLEI GCGC 3 cut(s) 526, 717, 2650
AsuHPI GGTGA 7 cut(s) 761, 977, 1136, 1411, 1630, 2285, 2929
AsuII TTCGAA 1 cut(s) 64
BalI TGGCCA 2 cut(s) 116, 3010
BanI GGYRCC 1 cut(s) 714
BanII GRGCYC 2 cut(s) 2363, 2584
BauI CACGAG 1 cut(s) 994
BbsI GAAGAC 3 cut(s) 402, 2010, 2196
Bbv12I GWGCWC 2 cut(s) 2363, 2584
BcgI CGANNNNNNTGC 2 cut(s) 1849, 1883
BciT130I CCWGG 4 cut(s) 989, 1983, 2100, 2804
BciVI GTATCC 1 cut(s) 2082
BclI TGATCA 5 cut(s) 2037, 2373, 2490, 2562, 2655
BcoDI GTCTC 4 cut(s) 80, 436, 1325, 1902
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 9 cut(s) 6, 15, 56, 129, 608, 1025, 1521, 1745, 2834
BfmI CTRYAG 3 cut(s) 637, 1731, 2403
BfoI RGCGCY 2 cut(s) 718, 2651
BfuAI ACCTGC 2 cut(s) 2009, 2507
BfuI GTATCC 1 cut(s) 2082
BglII AGATCT 2 cut(s) 301, 1542
Bme1390I CCNGG 4 cut(s) 989, 1983, 2100, 2804
BmeRI GACNNNNNGTC 1 cut(s) 664
BmgBI CACGTC 1 cut(s) 1022
BmiI GGNNCC 4 cut(s) 427, 716, 2281, 2678
BmrFI CCNGG 4 cut(s) 989, 1983, 2100, 2804
BmrI ACTGGG 1 cut(s) 2974
BmsI GCATC 7 cut(s) 51, 379, 918, 1759, 1847, 1869, 2278
BmuI ACTGGG 1 cut(s) 2974
BpiI GAAGAC 3 cut(s) 402, 2010, 2196
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpmI CTGGAG 3 cut(s) 299, 671, 2139
Bpu14I TTCGAA 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 389, 2673
BsaHI GRCGYC 2 cut(s) 715, 1007
BsaI GGTCTC 3 cut(s) 436, 1325, 1902
BsaJI CCNNGG 2 cut(s) 1119, 1335
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 6 cut(s) 322, 694, 791, 1396, 1645, 2636
Bse1I ACTGG 4 cut(s) 1507, 2047, 2633, 2969
Bse3DI GCAATG 4 cut(s) 1311, 1755, 2889, 2991
BseBI CCWGG 4 cut(s) 989, 1983, 2100, 2804
BseDI CCNNGG 2 cut(s) 1119, 1335
BseGI GGATG 7 cut(s) 521, 811, 933, 954, 1605, 2386, 2451
BseLI CCNNNNNNNGG 6 cut(s) 322, 694, 791, 1396, 1645, 2636
BseMI GCAATG 4 cut(s) 1311, 1755, 2889, 2991
BseMII CTCAG 5 cut(s) 890, 1867, 2070, 2107, 3073
BseNI ACTGG 4 cut(s) 1507, 2047, 2633, 2969
BseRI GAGGAG 1 cut(s) 1907
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 5 cut(s) 116, 626, 1519, 2098, 3010
BshNI GGYRCC 1 cut(s) 714
BsiHKAI GWGCWC 2 cut(s) 2363, 2584
BslFI GGGAC 3 cut(s) 1965, 2510, 2982
BslI CCNNNNNNNGG 6 cut(s) 322, 694, 791, 1396, 1645, 2636
BsmAI GTCTC 4 cut(s) 80, 436, 1325, 1902
BsmFI GGGAC 3 cut(s) 1965, 2510, 2982
BsmI GAATGC 3 cut(s) 100, 1632, 1865
BsnI GGCC 5 cut(s) 116, 626, 1519, 2098, 3010
Bso31I GGTCTC 3 cut(s) 436, 1325, 1902
Bsp119I TTCGAA 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 2363, 2584
Bsp1407I TGTACA 4 cut(s) 1358, 1512, 1754, 2430
Bsp19I CCATGG 1 cut(s) 1335
BspACI CCGC 4 cut(s) 1208, 1583, 1697, 2505
BspANI GGCC 5 cut(s) 116, 626, 1519, 2098, 3010
BspCNI CTCAG 5 cut(s) 889, 1866, 2071, 2106, 3072
BspHI TCATGA 1 cut(s) 1588
BspLI GGNNCC 4 cut(s) 427, 716, 2281, 2678
BspMAI CTGCAG 1 cut(s) 1735
BspMI ACCTGC 2 cut(s) 2009, 2507
BspPI GGATC 2 cut(s) 46, 1964
BspT104I TTCGAA 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 714
BspTNI GGTCTC 3 cut(s) 436, 1325, 1902
BsrDI GCAATG 4 cut(s) 1311, 1755, 2889, 2991
BsrGI TGTACA 4 cut(s) 1358, 1512, 1754, 2430
BsrI ACTGG 4 cut(s) 1507, 2047, 2633, 2969
BssECI CCNNGG 2 cut(s) 1119, 1335
BssNI GRCGYC 2 cut(s) 715, 1007
BssSI CACGAG 1 cut(s) 994
BssT1I CCWWGG 1 cut(s) 1335
Bst2BI CACGAG 1 cut(s) 994
Bst2UI CCWGG 4 cut(s) 989, 1983, 2100, 2804
Bst4CI ACNGT 8 cut(s) 581, 654, 1120, 1708, 2009, 2407, 2470, 2710
Bst6I CTCTTC 3 cut(s) 83, 1277, 1616
BstACI GRCGYC 2 cut(s) 715, 1007
BstAUI TGTACA 4 cut(s) 1358, 1512, 1754, 2430
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 27, 1846
BstDEI CTNAG 8 cut(s) 282, 876, 1075, 1404, 1853, 2079, 2093, 3059
BstDSI CCRYGG 2 cut(s) 1119, 1335
BstF5I GGATG 7 cut(s) 521, 811, 933, 954, 1605, 2386, 2451
BstH2I RGCGCY 2 cut(s) 718, 2651
BstHHI GCGC 3 cut(s) 526, 717, 2650
BstMAI GTCTC 4 cut(s) 80, 436, 1325, 1902
BstMWI GCNNNNNNNGC 6 cut(s) 113, 984, 1301, 1857, 2399, 2513
BstNI CCWGG 4 cut(s) 989, 1983, 2100, 2804
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 987, 1981, 2098, 2802
BstSFI CTRYAG 3 cut(s) 637, 1731, 2403
BstV2I GAAGAC 3 cut(s) 402, 2010, 2196
BstX2I RGATCY 3 cut(s) 301, 1542, 1969
BstXI CCANNNNNNTGG 1 cut(s) 3018
BstYI RGATCY 3 cut(s) 301, 1542, 1969
BsuI GTATCC 1 cut(s) 2082
BsuRI GGCC 5 cut(s) 116, 626, 1519, 2098, 3010
BtgI CCRYGG 2 cut(s) 1119, 1335
BtgZI GCGATG 1 cut(s) 1846
BtrI CACGTC 1 cut(s) 1022
BtsCI GGATG 7 cut(s) 521, 811, 933, 954, 1605, 2386, 2451
BtsI GCAGTG 2 cut(s) 2058, 2271
BtsIMutI CAGTG 6 cut(s) 243, 2040, 2058, 2271, 2466, 2640
BveI ACCTGC 2 cut(s) 2009, 2507
Cac8I GCNNGC 2 cut(s) 27, 1846
CciI TCATGA 1 cut(s) 1588
CfoI GCGC 3 cut(s) 526, 717, 2650
CseI GACGC 1 cut(s) 1015
Csp6I GTAC 9 cut(s) 1310, 1359, 1374, 1513, 1715, 1755, 2231, 2431, 2698
CviQI GTAC 9 cut(s) 1310, 1359, 1374, 1513, 1715, 1755, 2231, 2431, 2698
DdeI CTNAG 8 cut(s) 282, 876, 1075, 1404, 1853, 2079, 2093, 3059
DinI GGCGCC 1 cut(s) 716
DraI TTTAAA 1 cut(s) 1723
DrdI GACNNNNNNGTC 2 cut(s) 1339, 1959
DriI GACNNNNNGTC 1 cut(s) 664
DseDI GACNNNNNNGTC 2 cut(s) 1339, 1959
EaeI YGGCCR 3 cut(s) 114, 624, 3008
Eam1104I CTCTTC 3 cut(s) 83, 1277, 1616
Eam1105I GACNNNNNGTC 1 cut(s) 664
EarI CTCTTC 3 cut(s) 83, 1277, 1616
EciI GGCGGA 1 cut(s) 1712
Ecl136II GAGCTC 2 cut(s) 2361, 2582
Eco130I CCWWGG 1 cut(s) 1335
Eco147I AGGCCT 2 cut(s) 1519, 2098
Eco24I GRGCYC 2 cut(s) 2363, 2584
Eco31I GGTCTC 3 cut(s) 436, 1325, 1902
Eco53kI GAGCTC 2 cut(s) 2361, 2582
Eco57I CTGAAG 3 cut(s) 414, 1946, 2379
EcoICRI GAGCTC 2 cut(s) 2361, 2582
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 4 cut(s) 987, 1981, 2098, 2802
EcoT14I CCWWGG 1 cut(s) 1335
EcoT22I ATGCAT 3 cut(s) 839, 1862, 2987
EcoT38I GRGCYC 2 cut(s) 2363, 2584
EgeI GGCGCC 1 cut(s) 716
EheI GGCGCC 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 1335
FalI AAGNNNNNCTT 2 cut(s) 2834, 2866
FaqI GGGAC 3 cut(s) 1965, 2510, 2982
FauNDI CATATG 1 cut(s) 590
FbaI TGATCA 5 cut(s) 2037, 2373, 2490, 2562, 2655
FblI GTMKAC 1 cut(s) 264
FokI GGATG 7 cut(s) 528, 818, 940, 961, 1612, 2393, 2438
FriOI GRGCYC 2 cut(s) 2363, 2584
FspBI CTAG 9 cut(s) 6, 15, 56, 129, 608, 1025, 1521, 1745, 2834
GlaI GCGC 3 cut(s) 525, 716, 2649
GsuI CTGGAG 3 cut(s) 299, 671, 2139
HaeII RGCGCY 2 cut(s) 718, 2651
HaeIII GGCC 5 cut(s) 116, 626, 1519, 2098, 3010
HgaI GACGC 1 cut(s) 1015
HhaI GCGC 3 cut(s) 526, 717, 2650
Hin1I GRCGYC 2 cut(s) 715, 1007
Hin6I GCGC 3 cut(s) 524, 715, 2648
HinP1I GCGC 3 cut(s) 524, 715, 2648
HindIII AAGCTT 3 cut(s) 284, 1437, 2219
HphI GGTGA 7 cut(s) 761, 977, 1136, 1411, 1630, 2285, 2929
Hpy166II GTNNAC 6 cut(s) 265, 1513, 1755, 2026, 2431, 2557
Hpy8I GTNNAC 6 cut(s) 265, 1513, 1755, 2026, 2431, 2557
HpyCH4III ACNGT 8 cut(s) 581, 654, 1120, 1708, 2009, 2407, 2470, 2710
HpyCH4IV ACGT 4 cut(s) 81, 246, 1021, 2664
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 984, 1301, 1857, 2399, 2513
HpyF3I CTNAG 8 cut(s) 282, 876, 1075, 1404, 1853, 2079, 2093, 3059
HpySE526I ACGT 4 cut(s) 81, 246, 1021, 2664
Hsp92I GRCGYC 2 cut(s) 715, 1007
HspAI GCGC 3 cut(s) 524, 715, 2648
KasI GGCGCC 1 cut(s) 714
Ksp22I TGATCA 5 cut(s) 2037, 2373, 2490, 2562, 2655
LmnI GCTCC 6 cut(s) 39, 318, 1727, 1894, 2117, 2579
LweI GCATC 7 cut(s) 51, 379, 918, 1759, 1847, 1869, 2278
MaeI CTAG 9 cut(s) 6, 15, 56, 129, 608, 1025, 1521, 1745, 2834
MaeII ACGT 4 cut(s) 81, 246, 1021, 2664
MaeIII GTNAC 8 cut(s) 851, 934, 1210, 1255, 1399, 1760, 2266, 2752
MfeI CAATTG 2 cut(s) 1215, 3012
MflI RGATCY 3 cut(s) 301, 1542, 1969
MhlI GDGCHC 2 cut(s) 2363, 2584
MlsI TGGCCA 2 cut(s) 116, 3010
MluNI TGGCCA 2 cut(s) 116, 3010
Mly113I GGCGCC 1 cut(s) 715
MlyI GAGTC 3 cut(s) 270, 1252, 2189
MmeI TCCRAC 4 cut(s) 453, 551, 905, 1580
Mox20I TGGCCA 2 cut(s) 116, 3010
Mph1103I ATGCAT 3 cut(s) 839, 1862, 2987
MroXI GAANNNNTTC 2 cut(s) 399, 884
MscI TGGCCA 2 cut(s) 116, 3010
MseI TTAA 9 cut(s) 249, 503, 560, 1686, 1722, 1785, 1965, 2531, 2853
MslI CAYNNNNRTG 2 cut(s) 2033, 2792
Msp20I TGGCCA 2 cut(s) 116, 3010
MspA1I CMGCKG 3 cut(s) 319, 788, 1205
MspR9I CCNGG 4 cut(s) 989, 1983, 2100, 2804
MunI CAATTG 2 cut(s) 1215, 3012
Mva1269I GAATGC 3 cut(s) 100, 1632, 1865
MvaI CCWGG 4 cut(s) 989, 1983, 2100, 2804
MwoI GCNNNNNNNGC 6 cut(s) 113, 984, 1301, 1857, 2399, 2513
NarI GGCGCC 1 cut(s) 715
NcoI CCATGG 1 cut(s) 1335
NdeI CATATG 1 cut(s) 590
NlaIV GGNNCC 4 cut(s) 427, 716, 2281, 2678
NmuCI GTSAC 6 cut(s) 851, 934, 1255, 1399, 2266, 2752
NsiI ATGCAT 3 cut(s) 839, 1862, 2987
NspI RCATGY 1 cut(s) 29
NspV TTCGAA 1 cut(s) 64
OliI CACNNNNGTG 1 cut(s) 2792
PaeI GCATGC 1 cut(s) 29
PagI TCATGA 1 cut(s) 1588
PaqCI CACCTGC 1 cut(s) 2009
PceI AGGCCT 2 cut(s) 1519, 2098
PctI GAATGC 3 cut(s) 100, 1632, 1865
PdmI GAANNNNTTC 2 cut(s) 399, 884
PfeI GAWTC 9 cut(s) 227, 411, 543, 830, 880, 1424, 1529, 2332, 2886
PflMI CCANNNNNTGG 2 cut(s) 322, 791
PfoI TCCNGGA 1 cut(s) 1981
PleI GAGTC 3 cut(s) 270, 1252, 2188
PluTI GGCGCC 1 cut(s) 718
PpsI GAGTC 3 cut(s) 270, 1252, 2188
PsiI TTATAA 1 cut(s) 3084
Psp124BI GAGCTC 2 cut(s) 2363, 2584
Psp6I CCWGG 4 cut(s) 987, 1981, 2098, 2802
PspGI CCWGG 4 cut(s) 987, 1981, 2098, 2802
PspN4I GGNNCC 4 cut(s) 427, 716, 2281, 2678
PstI CTGCAG 1 cut(s) 1735
PsuI RGATCY 3 cut(s) 301, 1542, 1969
PvuII CAGCTG 3 cut(s) 319, 788, 1205
RsaI GTAC 9 cut(s) 1311, 1360, 1375, 1514, 1716, 1756, 2232, 2432, 2699
RsaNI GTAC 9 cut(s) 1310, 1359, 1374, 1513, 1715, 1755, 2231, 2431, 2698
RseI CAYNNNNRTG 2 cut(s) 2033, 2792
SacI GAGCTC 2 cut(s) 2363, 2584
SaqAI TTAA 9 cut(s) 249, 503, 560, 1686, 1722, 1785, 1965, 2531, 2853
SchI GAGTC 3 cut(s) 270, 1252, 2189
ScrFI CCNGG 4 cut(s) 989, 1983, 2100, 2804
SduI GDGCHC 2 cut(s) 2363, 2584
SfaNI GCATC 7 cut(s) 51, 379, 918, 1759, 1847, 1869, 2278
SfcI CTRYAG 3 cut(s) 637, 1731, 2403
SfoI GGCGCC 1 cut(s) 716
SfuI TTCGAA 1 cut(s) 64
SmiMI CAYNNNNRTG 2 cut(s) 2033, 2792
SmlI CTYRAG 2 cut(s) 404, 2688
SmoI CTYRAG 2 cut(s) 404, 2688
SpeI ACTAGT 1 cut(s) 14
SphI GCATGC 1 cut(s) 29
SseBI AGGCCT 2 cut(s) 1519, 2098
SsiI CCGC 4 cut(s) 1208, 1583, 1697, 2505
SspDI GGCGCC 1 cut(s) 714
SspI AATATT 1 cut(s) 732
SspMI CTAG 9 cut(s) 6, 15, 56, 129, 608, 1025, 1521, 1745, 2834
SstI GAGCTC 2 cut(s) 2363, 2584
StuI AGGCCT 2 cut(s) 1519, 2098
StyD4I CCNGG 4 cut(s) 987, 1981, 2098, 2802
StyI CCWWGG 1 cut(s) 1335
TaaI ACNGT 8 cut(s) 581, 654, 1120, 1708, 2009, 2407, 2470, 2710
TaiI ACGT 4 cut(s) 84, 249, 1024, 2667
TaqI TCGA 7 cut(s) 45, 64, 414, 1043, 1099, 1467, 2136
TatI WGTACW 5 cut(s) 1358, 1512, 1714, 1754, 2430
TauI GCSGC 1 cut(s) 2507
TfiI GAWTC 9 cut(s) 227, 411, 543, 830, 880, 1424, 1529, 2332, 2886
Tru1I TTAA 9 cut(s) 249, 503, 560, 1686, 1722, 1785, 1965, 2531, 2853
Tru9I TTAA 9 cut(s) 249, 503, 560, 1686, 1722, 1785, 1965, 2531, 2853
TscAI CASTG 6 cut(s) 243, 2047, 2065, 2271, 2473, 2640
TseFI GTSAC 6 cut(s) 851, 934, 1255, 1399, 2266, 2752
Tsp45I GTSAC 6 cut(s) 851, 934, 1255, 1399, 2266, 2752
TspGWI ACGGA 2 cut(s) 396, 1327
TspRI CASTG 6 cut(s) 243, 2047, 2065, 2271, 2473, 2640
Van91I CCANNNNNTGG 2 cut(s) 322, 791
XapI RAATTY 3 cut(s) 375, 2138, 2939
XbaI TCTAGA 2 cut(s) 128, 1024
XceI RCATGY 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 2 cut(s) 399, 884
XspI CTAG 9 cut(s) 6, 15, 56, 129, 608, 1025, 1521, 1745, 2834
Zsp2I ATGCAT 3 cut(s) 839, 1862, 2987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.