Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

62222525 .. 62223151

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAGCTAGCAGCCTCAGATGCATAGCATTTGCACATAAACAAGTTCCAGCAGAAGAGCGACTAAATGCAGACCAGAAATTTGTGCTAAAGGAAGATGGATTAACCCTATTGGGACTTGTAGGTCTTAAGGAACCATGCCATCCAGGTGTGAAAAAAGCAGTTGAAGAATGTCAATATGCAGGGGTGAATGTCAAAATAATTACTGGCGACAATGTTTTCACTGCAAAAGCCATAGCTACTGAATGTGGGATACTCGGGGCTAGTCAGGACATGTTCGGAGCAGTTATTGAAGGTGTGGAATTCCACAACTACACGCCAGAAGAGAGACTGGAGAAAGTTGACAAAATTTGTGTGATGGCAAGGTCTTCTCCTTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAATTACCGGTGACGGCACCAATGATGCACCGGCACTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTTGCCAAGGAAAGCTCGGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGAAGATGCGTGTACAATAATATCCAGAAGTTCATCCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

209

Amino Acids

22.54

Weight (kDa)

5.27

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	22 - 159	3.8e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	443
AcsI	RAATTY	3 cut(s)	80, 302, 348
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	596
AflII	CTTAAG	1 cut(s)	128
AflIII	ACRYGT	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	167, 293, 406, 500
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	5 cut(s)	8, 239, 385, 473, 525
AluI	AGCT	5 cut(s)	8, 239, 385, 473, 525
Alw26I	GTCTC	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	5, 12
ApoI	RAATTY	3 cut(s)	80, 302, 348
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	199, 449
AsuNHI	GCTAGC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	17, 24
BccI	CCATC	3 cut(s)	92, 150, 352
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	246
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	9, 264, 625
BfmI	CTRYAG	1 cut(s)	567
BfrI	CTTAAG	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	246
BisI	GCNGC	2 cut(s)	6, 13
BlsI	GCNGC	2 cut(s)	7, 14
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	135, 445
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	3 cut(s)	11, 442, 578
BmtI	GCTAGC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	434
Bse118I	RCCGGY	2 cut(s)	434, 457
Bse1I	ACTGG	2 cut(s)	211, 336
Bse3DI	GCAATG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	142, 550, 615
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	31
BseNI	ACTGG	2 cut(s)	211, 336
BseXI	GCAGC	2 cut(s)	17, 24
BshNI	GGYRCC	1 cut(s)	443
BshTI	ACCGGT	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	435, 458
BslFI	GGGAC	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	257
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	537
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	135, 445
BspOI	GCTAGC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	443
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	404
BsrFI	RCCGGY	2 cut(s)	434, 457
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	211, 336
BssAI	RCCGGY	2 cut(s)	434, 457
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	2 cut(s)	51, 318
BstAFI	CTTAAG	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	17
BstF5I	GGATG	3 cut(s)	142, 550, 615
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 563
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	17, 24
BstV2I	GAAGAC	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	142, 550, 615
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 461
Cac8I	GCNNGC	1 cut(s)	10
Cfr10I	RCCGGY	2 cut(s)	434, 457
Csp6I	GTAC	1 cut(s)	595
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	4 cut(s)	138, 274, 419, 541
CviJI	RGCY	8 cut(s)	8, 15, 233, 239, 263, 385, 473, 525
CviKI_1	RGCY	8 cut(s)	8, 15, 233, 239, 263, 385, 473, 525
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
DrdI	GACNNNNNNGTC	1 cut(s)	123
DseDI	GACNNNNNNGTC	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	51, 318
EarI	CTCTTC	2 cut(s)	51, 318
Eco130I	CCWWGG	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	4 cut(s)	141, 277, 422, 544
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	4 cut(s)	137, 273, 418, 540
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	6, 13
FokI	GGATG	3 cut(s)	129, 557, 602
Fsp4HI	GCNGC	2 cut(s)	6, 13
FspBI	CTAG	3 cut(s)	9, 264, 625
GluI	GCNGC	2 cut(s)	6, 13
GsuI	CTGGAG	1 cut(s)	353
HapII	CCGG	2 cut(s)	435, 458
Hin1II	CATG	4 cut(s)	141, 277, 422, 544
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	435, 458
HphI	GGTGA	2 cut(s)	199, 449
Hpy166II	GTNNAC	2 cut(s)	343, 595
Hpy188I	TCNGA	3 cut(s)	20, 281, 529
Hpy188III	TCNNGA	2 cut(s)	269, 607
Hpy8I	GTNNAC	2 cut(s)	343, 595
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	8 cut(s)	24, 35, 71, 182, 227, 397, 428, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 563
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	141, 277, 422, 544
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	17, 24
LweI	GCATC	3 cut(s)	11, 442, 578
MaeI	CTAG	3 cut(s)	9, 264, 625
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	6 cut(s)	68, 107, 179, 335, 360, 597
MluCI	AATT	6 cut(s)	80, 201, 302, 348, 429, 620
MnlI	CCTC	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	2 cut(s)	104, 129
MslI	CAYNNNNRTG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	2 cut(s)	435, 458
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	21, 563
NdeII	GATC	1 cut(s)	537
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	4 cut(s)	141, 277, 422, 544
NlaIV	GGNNCC	2 cut(s)	135, 445
NmuCI	GTSAC	1 cut(s)	437
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	1 cut(s)	277
PciI	ACATGT	1 cut(s)	273
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	496
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	2 cut(s)	7, 14
PscI	ACATGT	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	135, 445
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	104, 129
SatI	GCNGC	2 cut(s)	6, 13
Sau3AI	GATC	1 cut(s)	537
ScrFI	CCNGG	1 cut(s)	147
SfaNI	GCATC	3 cut(s)	11, 442, 578
SfcI	CTRYAG	1 cut(s)	567
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	6 cut(s)	80, 201, 302, 348, 429, 620
SspMI	CTAG	3 cut(s)	9, 264, 625
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	1 cut(s)	571
TasI	AATT	6 cut(s)	80, 201, 302, 348, 429, 620
TatI	WGTACW	1 cut(s)	594
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	104, 129
Tru9I	TTAA	2 cut(s)	104, 129
TscAI	CASTG	2 cut(s)	229, 468
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	2 cut(s)	5, 12
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	604
TspRI	CASTG	2 cut(s)	229, 468
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	3 cut(s)	80, 302, 348
XceI	RCATGY	1 cut(s)	277
XspI	CTAG	3 cut(s)	9, 264, 625
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.