Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Forward (+)

2525789 .. 2526520

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATTACAATGAAAAAATGAACTTTGAGCAGATTAGTCAAGGTATGGCAGCAAGCAGCCTCAGATGCATCGCATTCGCACATAAAGAAGTTCCAGCAGAGGAGGAAGTTGAGGTAGACCAGAAAGTTGTGCTAAAGGAAGATGGCTTGACCCTATTGGGACTTGTAGGTCTTAAAGTCCATGTTGCTTCTGATGGTCAATGCTTGAAGCAAAAAGGTCATGTAGTTGCAGTGACTGGTGATGGCACCAATAATGCACCGGCATTGAAAGAAGCTGATATAGTCCTTTCTAGGGGAATTCAAGGCACAGAAGTTGCTAGAGAGAGCTCAGACATTGTGATCATGGATGATAAGTTTGCTTTAGTTGCCACAGTTTTGAGATGGAGAAGATTCGTTTACGATCAGATCTATAAGTTCATCCAATTCCAGTTCAATGTAAATGTTGCTGCTGTTGTGATCGACTCTGTTGCAGCCATTCATGACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

5.04

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase	PF13246	1 - 58	5.9e-06	P-type ATPase, cytoplasmic domain N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	245
AccI	GTMKAC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	208, 268, 302, 433
AluBI	AGCT	2 cut(s)	275, 327
AluI	AGCT	2 cut(s)	275, 327
Alw21I	GWGCWC	1 cut(s)	329
AlwNI	CAGNNNCTG	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	50, 57, 446, 470
ApoI	RAATTY	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	4 cut(s)	62, 69, 433, 482
BccI	CCATC	4 cut(s)	137, 188, 236, 375
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 449, 483
BclI	TGATCA	1 cut(s)	339
BfaI	CTAG	2 cut(s)	291, 318
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	4 cut(s)	51, 58, 447, 471
BlsI	GCNGC	4 cut(s)	52, 59, 448, 472
BmiI	GGNNCC	1 cut(s)	247
BmsI	GCATC	2 cut(s)	56, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	2 cut(s)	241, 427
BseGI	GGATG	2 cut(s)	352, 417
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	76, 342
BseNI	ACTGG	2 cut(s)	241, 427
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	62, 69, 433, 482
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	339, 400, 405, 456
BspCNI	CTCAG	2 cut(s)	75, 341
BspHI	TCATGA	2 cut(s)	478, 485
BspLI	GGNNCC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	241, 427
BssAI	RCCGGY	1 cut(s)	259
BssMI	GATC	4 cut(s)	339, 400, 405, 456
Bst4CI	ACNGT	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	62, 328
BstF5I	GGATG	2 cut(s)	352, 417
BstKTI	GATC	4 cut(s)	342, 403, 408, 459
BstMBI	GATC	4 cut(s)	339, 400, 405, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 365
BstV1I	GCAGC	4 cut(s)	62, 69, 433, 482
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	352, 417
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	55
CaiI	CAGNNNCTG	1 cut(s)	236
CciI	TCATGA	2 cut(s)	478, 485
Cfr10I	RCCGGY	1 cut(s)	259
CviAII	CATG	5 cut(s)	182, 221, 343, 479, 486
CviJI	RGCY	5 cut(s)	60, 147, 275, 327, 473
CviKI_1	RGCY	5 cut(s)	60, 147, 275, 327, 473
DdeI	CTNAG	2 cut(s)	62, 328
DpnI	GATC	4 cut(s)	341, 402, 407, 458
DpnII	GATC	4 cut(s)	339, 400, 405, 456
DrdI	GACNNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	5 cut(s)	185, 224, 346, 482, 489
FaiI	YATR	9 cut(s)	47, 84, 183, 222, 281, 344, 411, 480, 487
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	5 cut(s)	181, 220, 342, 478, 485
FbaI	TGATCA	1 cut(s)	339
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	51, 58, 447, 471
FokI	GGATG	2 cut(s)	359, 404
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	51, 58, 447, 471
FspBI	CTAG	2 cut(s)	291, 318
GluI	GCNGC	4 cut(s)	51, 58, 447, 471
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	5 cut(s)	185, 224, 346, 482, 489
HinfI	GANTC	3 cut(s)	390, 461, 482
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	2 cut(s)	118, 397
Hpy188I	TCNGA	4 cut(s)	65, 193, 331, 405
Hpy188III	TCNNGA	2 cut(s)	479, 486
Hpy8I	GTNNAC	2 cut(s)	118, 397
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	69, 230, 257, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 365
HpyF3I	CTNAG	2 cut(s)	62, 328
Hsp92II	CATG	5 cut(s)	185, 224, 346, 482, 489
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	339, 400, 405, 456
LpnPI	CCDG	5 cut(s)	108, 134, 222, 273, 440
Lsp1109I	GCAGC	4 cut(s)	62, 69, 433, 482
LweI	GCATC	2 cut(s)	56, 78
MaeI	CTAG	2 cut(s)	291, 318
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	341, 402, 407, 458
MboI	GATC	4 cut(s)	339, 400, 405, 456
MboII	GAAGA	2 cut(s)	152, 399
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	297, 422
MlyI	GAGTC	2 cut(s)	455, 476
MnlI	CCTC	4 cut(s)	71, 94, 97, 106
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	66, 365
NdeII	GATC	4 cut(s)	339, 400, 405, 456
NlaIII	CATG	5 cut(s)	185, 224, 346, 482, 489
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	71
PagI	TCATGA	2 cut(s)	478, 485
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	4 cut(s)	52, 59, 448, 472
PleI	GAGTC	2 cut(s)	455, 476
PpsI	GAGTC	2 cut(s)	455, 476
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	247
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	405
SacI	GAGCTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	51, 58, 447, 471
Sau3AI	GATC	4 cut(s)	339, 400, 405, 456
SchI	GAGTC	2 cut(s)	455, 476
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	6 cut(s)	46, 117, 172, 220, 277, 329
SfaNI	GCATC	2 cut(s)	56, 78
Sse9I	AATT	2 cut(s)	297, 422
SspMI	CTAG	2 cut(s)	291, 318
SstI	GAGCTC	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	459
TasI	AATT	2 cut(s)	297, 422
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	50, 57, 446, 470
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	4 cut(s)	27, 35, 406, 467
TspRI	CASTG	1 cut(s)	237
XapI	RAATTY	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	2 cut(s)	291, 318
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.