Rorug03G0319000

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
34463140 .. 34464325
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0319000.1

Sequence Viewer

Length: 423 bp
ATGGGTCGTGTTCGCACCAAGACAGTGAAGAAGTCCTCACGCCTGGTGATTGAGAGGTACTACTCTAAGATGACCTTGGACTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCCATCATACCCTCAAAAAGGCTCAGGAACAAGATTGCTGGCTTCTCCACTCACCTGATGAAGCGCATTCAAAAGGGTCCTGTTAGGGGTATCTCACTCAAACTGCAGGAAGAAGAGCGTGAGCGTCGCATGGACTTTGTACCTGAAGAGTCTGCTATCAGGATTGATGACATCAAGGTTGATAAGGAGACCCTGGACATGCTTTCTTCTCTTGGCATGTCTGAAATTCCTGGGGTATCTGAAGCTGAGCCGCAGGTTGTGGTTCCTAGCCAAGGATATGGACGTGGTCCACAGGGAAGGAGGTTTTAA

Protein Analysis

140

Amino Acids

16.06

Weight (kDa)

9.98

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17e PF00833 1 - 120 2.4e-59 Ribosomal S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 358
AciI CCGC 1 cut(s) 365
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 2 cut(s) 279, 375
AfaI GTAC 2 cut(s) 59, 255
AfiI CCNNNNNNNGG 3 cut(s) 132, 200, 386
AgsI TTSAA 1 cut(s) 185
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 3 cut(s) 42, 306, 343
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 296
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 191, 401
AsuHPI GGTGA 2 cut(s) 58, 158
AvaII GGWCC 2 cut(s) 191, 401
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 3 cut(s) 44, 308, 345
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 358
BglII AGATCT 1 cut(s) 99
BisI GCNGC 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 3 cut(s) 44, 308, 345
Bme18I GGWCC 2 cut(s) 191, 401
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 191, 401
BmiI GGNNCC 2 cut(s) 192, 378
BmrFI CCNGG 3 cut(s) 44, 308, 345
Bpu10I CCTNAGC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 75, 306, 344, 385
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 200, 386
BseBI CCWGG 3 cut(s) 44, 308, 345
BseDI CCNNGG 4 cut(s) 75, 306, 344, 385
BseLI CCNNNNNNNGG 3 cut(s) 132, 200, 386
BseMII CTCAG 2 cut(s) 151, 351
BslI CCNNNNNNNGG 3 cut(s) 132, 200, 386
BsmAI GTCTC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 99
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 1 cut(s) 365
BspCNI CTCAG 2 cut(s) 150, 352
BspLI GGNNCC 2 cut(s) 192, 378
BspMAI CTGCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 358
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 75, 306, 344, 385
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 75, 385
Bst2UI CCWGG 3 cut(s) 44, 308, 345
Bst4CI ACNGT 1 cut(s) 25
Bst6I CTCTTC 3 cut(s) 102, 222, 255
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 66, 137, 360
BstENI CCTNNNNNAGG 2 cut(s) 130, 384
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 3 cut(s) 44, 308, 345
BstNSI RCATGY 2 cut(s) 316, 334
BstSCI CCNGG 3 cut(s) 42, 306, 343
BstSFI CTRYAG 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 99
BtrI CACGTC 1 cut(s) 398
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 191, 401
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 58, 254
CviAII CATG 3 cut(s) 244, 313, 331
CviJI RGCY 5 cut(s) 136, 156, 359, 364, 384
CviKI_1 RGCY 5 cut(s) 136, 156, 359, 364, 384
CviQI GTAC 2 cut(s) 58, 254
DdeI CTNAG 3 cut(s) 66, 137, 360
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 3 cut(s) 102, 222, 255
EarI CTCTTC 3 cut(s) 102, 222, 255
Eco130I CCWWGG 2 cut(s) 75, 385
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 191, 401
Eco57I CTGAAG 2 cut(s) 279, 375
EcoNI CCTNNNNNAGG 2 cut(s) 130, 384
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 3 cut(s) 42, 306, 343
EcoT14I CCWWGG 2 cut(s) 75, 385
ErhI CCWWGG 2 cut(s) 75, 385
FaeI CATG 3 cut(s) 247, 316, 334
FaiI YATR 5 cut(s) 122, 245, 314, 332, 393
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 86, 118
FatI CATG 3 cut(s) 243, 312, 330
Fnu4HI GCNGC 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 365
HgaI GACGC 1 cut(s) 227
HhaI GCGC 1 cut(s) 180
Hin1II CATG 3 cut(s) 247, 316, 334
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 1 cut(s) 263
HphI GGTGA 2 cut(s) 58, 158
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 2 cut(s) 337, 355
Hpy188III TCNNGA 2 cut(s) 139, 274
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 3 cut(s) 66, 137, 360
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 3 cut(s) 247, 316, 334
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 99
LguI GCTCTTC 1 cut(s) 222
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 397
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 7 cut(s) 40, 109, 119, 236, 239, 272, 312
MflI RGATCY 1 cut(s) 99
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 5 cut(s) 46, 48, 103, 136, 408
MseI TTAA 1 cut(s) 421
MspR9I CCNGG 3 cut(s) 44, 308, 345
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 3 cut(s) 44, 308, 345
NdeII GATC 1 cut(s) 99
NlaIII CATG 3 cut(s) 247, 316, 334
NlaIV GGNNCC 2 cut(s) 192, 378
NspI RCATGY 2 cut(s) 316, 334
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 399
PkrI GCNGC 1 cut(s) 366
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 3 cut(s) 42, 306, 343
PspGI CCWGG 3 cut(s) 42, 306, 343
PspN4I GGNNCC 2 cut(s) 192, 378
PspPI GGNCC 2 cut(s) 191, 401
PspPPI RGGWCCY 1 cut(s) 191
PstI CTGCAG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 399
RsaI GTAC 2 cut(s) 59, 255
RsaNI GTAC 2 cut(s) 58, 254
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 421
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 2 cut(s) 191, 401
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 44, 308, 345
SfcI CTRYAG 1 cut(s) 218
SinI GGWCC 2 cut(s) 191, 401
Sse9I AATT 1 cut(s) 339
SsiI CCGC 1 cut(s) 365
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 42, 306, 343
StyI CCWWGG 2 cut(s) 75, 385
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 400
TasI AATT 1 cut(s) 339
TauI GCSGC 1 cut(s) 367
Tru1I TTAA 1 cut(s) 421
Tru9I TTAA 1 cut(s) 421
TscAI CASTG 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 1 cut(s) 399
VpaK11BI GGWCC 2 cut(s) 191, 401
XagI CCTNNNNNAGG 2 cut(s) 130, 384
XapI RAATTY 1 cut(s) 339
XceI RCATGY 2 cut(s) 316, 334
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.