RLG00000010054

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
62256701 .. 62259922
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010054

Sequence Viewer

Length: 3222 bp
ATGCAAGGTGATGGACAAACATTAGCTTTGCGATTTTCGAAAATTCTTCAAAATTCAATTGCATGTTACACAACCCATCTTCGACTTGTCAATAGTTCTTTGCTGGCAATCGATTTGATCCGAATAGTTTTTGTAATACACCTTGCAGTTAGAGCATGCGTAGGTCAACTTCAGTGCCCTGGAAAAAAAGTGGGAAGCAATGTCGGGTTGATTCTTGATGTTCCGAGCAGTAATCTTGGCAGAAGCAAAAGAAAATGGCATTCTGCTTTGATTACCATCTACTGCTCTAGAGCCTTCCTCTCTTTACGACCTTCTACACTTCCCAAACATACCAACTCCACATTCATGTCTCGCACCCTCTCTTACCCCATTGTTAGGGTCGAGCCAGTCTCGGACCCAGCCACTAATGGATTCAAAGCAGACCAAAAAAGCCTCACTGAGCTTGTGAAGGAGAAAAATCTCAACAAGCTACTGGAGCTTGGAGGGGTTGACGAAGTACCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATGCAGAAGACATTGCGCGCAGACACGAAGCATTTGGTTCCAACACATACAAGAAACCTCCAACGCATGGATTCCTCCATTTTGTGTGTGAAGCCTTCAAAGAACTCACAATCCTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTTGTATCAGCATCAAAGAACAAGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTTGCAGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGCTGTCGAAAGTCAGCAACAATCTTCAAATTGAGGCTGTGAGAAATGGAAGGCGCCAACTGATTTCAATATTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGACCAAGTTCCAGCTGATGGATTACTTATCGAAGGCCACTCTGTATCAGTAGACGAACCAAGCATAACAGGGGAGAACGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTTTCTGGGACTAAAATCGCTGATGGTTATGGCCGGATGCTTGTCATATCAGTCGGGATGAACACGAACTGGGGTGAAAAGATGAGCCGAATCAGCCAAGACACCATTGAAAAGACACCTCTGCAAGCACGTCTAGATAAGCTAACATCGTCGATGGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCCGGTACTTCACAGGGAATACAGAGAATGAGAATGGAAACAAAATGTTCAATGGCAGCAAGACAAAATGCAATGGCATAATAAATGCTATCATTGGAATTGTATCAGCTGCACTTACAATCGTTGAGGTGGCAATTCCAGAAGGCCTACCATTAGCTGTGACTCTCAGTCTTTCTTACTCCATGAGGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACAGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTAACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCCCTTTACGTTCTCAACTTGATCCAAGAAGGAGTTTCTCTCAACACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCTGAAATTGAGATCTCTGGCAGTCCAACGGAAAAAGCTATTCTTTCATGGGCTGTACATGGGTGGAAGATGGATATGGAGAAAGTGGTGAAGAGTTGTAGAATTCTCCACGTTGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTATGGTGAAGAGAAAGGCAGATAACTCGATCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGAAATGTGCACAAGTTACTACAATGCGTGTGGACTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCAAATTATTCAAGGTATGGCAGCTAGCAGCCTCAGATGCATAGCATTTGCACATAAACAAGTTCCAGCAGAGGTGCAACTAAATGCAGACCAGAAAGTTTTGCTAAAGGAAGATGAATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGTCATCCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAAGCCTGGTCAGGACATGCTTGGAGAAGTCATAGAAGCTGTCGAATTCCGCCACTACACGCCAGAAGAGAGATCGGAGAAAGTTGAGAAAATTTCAGTCATGGCAAGATCTTCTCCGTTTGATAAGCTTCTAATGGTGCAGTGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACCGGTGATGGTACCAATGATGCACCAGCATTGAAAGAGGCTGATATAGGACTCTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCCTGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTGCAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGAAGTTTCAGCAGGTCAAGTCCCATTAACAGAAGTTCAGTTATTGTGGGTCACCTTGATCATCGACACACTTGGACCTCTTGCTCTTGCCACAGAAAAACCCACAAGAGAACTGATGGAGAAGCCACCAGTGGGAAGGACGGAACCTCTCATCACAAACATCATGTGGAGGAATCTCTTACCTCAAGCACTGCACCAAATAACAGTCCTCTTGATCTTACAATCCAGGTGCAAAGCAATCTTTGGTGTCAGTGATAAGGAAAAGGACACAATGATCTTCAACACTTTTGTGCTTTGCCAGGTTTTCAATGTGTTCAATGCAAGGAAGCTAGAGAAGAAGAATGTCTTCGAGGGAATACACACCAAGAAGTTGTTTATGGGGATCATTGCGGTGATAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGCGTATGCATTGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTTGTCAAGTTTATACCTGTTCCAGAGAAACCCATATTCTGA

Protein Analysis

1074

Amino Acids

118.04

Weight (kDa)

8.02

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 160 - 229 2.1e-12 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 285 - 376 3.1e-18 P-type ATPase actuator domain
Cation_ATPase PF13246 543 - 714 5.6e-27 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 687 - 824 1.3e-11 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 895 - 1065 5e-45 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2666
Acc65I GGTACC 1 cut(s) 2438
AccB1I GGYRCC 2 cut(s) 870, 2438
AccB7I CCANNNNNTGG 2 cut(s) 611, 947
AccI GTMKAC 1 cut(s) 981
AccII CGCG 1 cut(s) 562
AccIII TCCGGA 1 cut(s) 1467
AciI CCGC 4 cut(s) 2220, 2302, 2663, 3053
AclWI GGATC 7 cut(s) 112, 1504, 1627, 1861, 2123, 2527, 3053
AcoI YGGCCR 2 cut(s) 1078, 3167
AcsI RAATTY 6 cut(s) 42, 52, 1791, 2297, 2343, 3098
AcuI CTGAAG 3 cut(s) 155, 2538, 3053
AcyI GRCGYC 1 cut(s) 871
AfaI GTAC 8 cut(s) 498, 1259, 1516, 1531, 1673, 1746, 1875, 2440
AfiI CCNNNNNNNGG 5 cut(s) 375, 611, 947, 1552, 2795
AgeI ACCGGT 1 cut(s) 2429
AhdI GACNNNNNGTC 2 cut(s) 820, 1419
AjiI CACGTC 1 cut(s) 1178
AjnI CCWGG 6 cut(s) 178, 2140, 2257, 2535, 2888, 2961
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AleI CACNNNNGTG 1 cut(s) 2951
AloI GAACNNNNNNTCC 4 cut(s) 639, 671, 921, 953
Alw21I GWGCWC 2 cut(s) 1916, 2522
Alw26I GTCTC 5 cut(s) 354, 394, 924, 1481, 2199
Alw44I GTGCAC 1 cut(s) 1912
AlwI GGATC 7 cut(s) 112, 1504, 1627, 1861, 2123, 2527, 3053
Aor13HI TCCGGA 1 cut(s) 1467
AoxI GGCC 6 cut(s) 964, 1078, 1396, 1676, 2119, 3167
ApaLI GTGCAC 1 cut(s) 1912
ApeKI GCWGC 7 cut(s) 677, 1308, 1361, 1889, 2000, 2007, 2639
ApoI RAATTY 6 cut(s) 42, 52, 1791, 2297, 2343, 3098
AsiGI ACCGGT 1 cut(s) 2429
Asp700I GAANNNNTTC 2 cut(s) 1040, 3008
Asp718I GGTACC 1 cut(s) 2438
AspLEI GCGC 4 cut(s) 562, 564, 682, 873
AspS9I GGNCC 5 cut(s) 394, 1252, 1465, 2119, 2738
AsuII TTCGAA 3 cut(s) 38, 891, 1817
AsuNHI GCTAGC 1 cut(s) 2003
AvaII GGWCC 4 cut(s) 394, 1252, 1465, 2738
BaeGI GKGCMC 2 cut(s) 179, 1916
BalI TGGCCA 1 cut(s) 3169
BanI GGYRCC 2 cut(s) 870, 2438
BanII GRGCYC 1 cut(s) 2522
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbsI GAAGAC 2 cut(s) 558, 3001
Bbv12I GWGCWC 2 cut(s) 1916, 2522
BbvI GCAGC 7 cut(s) 664, 1320, 1348, 1901, 2012, 2019, 2651
BcgI CGANNNNNNTGC 2 cut(s) 1845, 1879
BciT130I CCWGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
BciVI GTATCC 1 cut(s) 2241
BclI TGATCA 2 cut(s) 2649, 2721
BcoDI GTCTC 5 cut(s) 354, 394, 924, 1481, 2199
BfaI CTAG 6 cut(s) 288, 1181, 1680, 1904, 2004, 2993
BfmI CTRYAG 1 cut(s) 793
BfoI RGCGCY 1 cut(s) 874
BfuAI ACCTGC 1 cut(s) 2666
BfuI GTATCC 1 cut(s) 2241
BglII AGATCT 2 cut(s) 1701, 2360
BisI GCNGC 7 cut(s) 678, 1309, 1362, 1890, 2001, 2008, 2640
BlsI GCNGC 7 cut(s) 679, 1310, 1363, 1891, 2002, 2009, 2641
Bme1390I CCNGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
Bme18I GGWCC 4 cut(s) 394, 1252, 1465, 2738
BmeRI GACNNNNNGTC 2 cut(s) 820, 1419
BmgBI CACGTC 1 cut(s) 1178
BmgT120I GGNCC 5 cut(s) 394, 1252, 1465, 2119, 2738
BmiI GGNNCC 5 cut(s) 396, 583, 872, 2440, 2808
BmrFI CCNGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 6 cut(s) 508, 535, 708, 1074, 2006, 2437
BmtI GCTAGC 1 cut(s) 2007
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 2 cut(s) 558, 3001
BplI GAGNNNNNCTC 6 cut(s) 282, 314, 374, 406, 1635, 1667
BpmI CTGGAG 1 cut(s) 494
Bpu14I TTCGAA 3 cut(s) 38, 891, 1817
BpuEI CTTGAG 3 cut(s) 2237, 2832, 3077
Bsa29I ATCGAT 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 871
BsaI GGTCTC 2 cut(s) 924, 1481
BsaJI CCNNGG 2 cut(s) 178, 1491
BsaWI WCCGGW 4 cut(s) 1254, 1467, 2201, 2429
BsaXI ACNNNNNCTCC 6 cut(s) 921, 951, 1827, 1857, 2196, 2226
Bsc4I CCNNNNNNNGG 5 cut(s) 375, 611, 947, 1552, 2795
Bse118I RCCGGY 1 cut(s) 2429
Bse1I ACTGG 6 cut(s) 386, 477, 1121, 1666, 1883, 2792
Bse3DI GCAATG 5 cut(s) 205, 555, 1330, 1467, 3048
Bse8I GATNNNNATC 1 cut(s) 275
BseAI TCCGGA 1 cut(s) 1467
BseBI CCWGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 178, 1491
BseGI GGATG 6 cut(s) 677, 1089, 1110, 1960, 2137, 2545
BseJI GATNNNNATC 1 cut(s) 275
BseLI CCNNNNNNNGG 5 cut(s) 375, 611, 947, 1552, 2795
BseMI GCAATG 5 cut(s) 205, 555, 1330, 1467, 3048
BseMII CTCAG 5 cut(s) 429, 1023, 1432, 2026, 2535
BseNI ACTGG 6 cut(s) 386, 477, 1121, 1666, 1883, 2792
BsePI GCGCGC 1 cut(s) 560
BseRI GAGGAG 1 cut(s) 1453
BseSI GKGCMC 2 cut(s) 179, 1916
BseXI GCAGC 7 cut(s) 664, 1320, 1348, 1901, 2012, 2019, 2651
BseYI CCCAGC 1 cut(s) 397
BsgI GTGCAG 3 cut(s) 1347, 2411, 2840
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 6 cut(s) 966, 1080, 1398, 1678, 2121, 3169
BshNI GGYRCC 2 cut(s) 870, 2438
BshTI ACCGGT 1 cut(s) 2429
BshVI ATCGAT 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 1916, 2522
BsiSI CCGG 5 cut(s) 1081, 1255, 1468, 2202, 2430
BslFI GGGAC 4 cut(s) 1069, 2124, 2669, 3141
BslI CCNNNNNNNGG 5 cut(s) 375, 611, 947, 1552, 2795
BsmAI GTCTC 5 cut(s) 354, 394, 924, 1481, 2199
BsmFI GGGAC 4 cut(s) 1069, 2124, 2669, 3141
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 6 cut(s) 966, 1080, 1398, 1678, 2121, 3169
Bso31I GGTCTC 2 cut(s) 924, 1481
Bsp119I TTCGAA 3 cut(s) 38, 891, 1817
Bsp1286I GDGCHC 3 cut(s) 179, 1916, 2522
Bsp13I TCCGGA 1 cut(s) 1467
Bsp1407I TGTACA 4 cut(s) 1514, 1671, 1744, 1873
Bsp19I CCATGG 1 cut(s) 1491
BspACI CCGC 4 cut(s) 2220, 2302, 2663, 3053
BspANI GGCC 6 cut(s) 966, 1080, 1398, 1678, 2121, 3169
BspCNI CTCAG 5 cut(s) 430, 1024, 1431, 2025, 2534
BspDI ATCGAT 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 1467
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 5 cut(s) 396, 583, 872, 2440, 2808
BspMI ACCTGC 1 cut(s) 2666
BspOI GCTAGC 1 cut(s) 2007
BspPI GGATC 7 cut(s) 112, 1504, 1627, 1861, 2123, 2527, 3053
BspT104I TTCGAA 3 cut(s) 38, 891, 1817
BspT107I GGYRCC 2 cut(s) 870, 2438
BspTNI GGTCTC 2 cut(s) 924, 1481
BsrDI GCAATG 5 cut(s) 205, 555, 1330, 1467, 3048
BsrFI RCCGGY 1 cut(s) 2429
BsrGI TGTACA 4 cut(s) 1514, 1671, 1744, 1873
BsrI ACTGG 6 cut(s) 386, 477, 1121, 1666, 1883, 2792
BssAI RCCGGY 1 cut(s) 2429
BssECI CCNNGG 2 cut(s) 178, 1491
BssHII GCGCGC 1 cut(s) 560
BssNI GRCGYC 1 cut(s) 871
BssT1I CCWWGG 1 cut(s) 1491
Bst2UI CCWGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
Bst4CI ACNGT 5 cut(s) 737, 810, 2566, 2629, 2869
Bst6I CTCTTC 3 cut(s) 1775, 1841, 2313
BstACI GRCGYC 1 cut(s) 871
BstAUI TGTACA 4 cut(s) 1514, 1671, 1744, 1873
BstBI TTCGAA 3 cut(s) 38, 891, 1817
BstC8I GCNNGC 5 cut(s) 105, 157, 562, 1173, 2005
BstDEI CTNAG 6 cut(s) 438, 1032, 1418, 1560, 2012, 2521
BstDSI CCRYGG 1 cut(s) 1491
BstEII GGTNACC 1 cut(s) 2713
BstF5I GGATG 6 cut(s) 677, 1089, 1110, 1960, 2137, 2545
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 874
BstHHI GCGC 4 cut(s) 562, 564, 682, 873
BstMAI GTCTC 5 cut(s) 354, 394, 924, 1481, 2199
BstMWI GCNNNNNNNGC 5 cut(s) 152, 475, 1140, 2016, 2558
BstNI CCWGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
BstNSI RCATGY 3 cut(s) 66, 159, 2272
BstPI GGTNACC 1 cut(s) 2713
BstSCI CCNGG 6 cut(s) 178, 2140, 2257, 2535, 2888, 2961
BstSFI CTRYAG 1 cut(s) 793
BstSLI GKGCMC 2 cut(s) 179, 1916
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 7 cut(s) 664, 1320, 1348, 1901, 2012, 2019, 2651
BstV2I GAAGAC 2 cut(s) 558, 3001
BstX2I RGATCY 4 cut(s) 1496, 1701, 2128, 2360
BstXI CCANNNNNNTGG 1 cut(s) 3177
BstYI RGATCY 4 cut(s) 1496, 1701, 2128, 2360
Bsu15I ATCGAT 1 cut(s) 111
BsuI GTATCC 1 cut(s) 2241
BsuRI GGCC 6 cut(s) 966, 1080, 1398, 1678, 2121, 3169
BsuTUI ATCGAT 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 1491
BtrI CACGTC 1 cut(s) 1178
BtsCI GGATG 6 cut(s) 677, 1089, 1110, 1960, 2137, 2545
BtsI GCAGTG 3 cut(s) 2399, 2430, 2852
BveI ACCTGC 1 cut(s) 2666
Cac8I GCNNGC 5 cut(s) 105, 157, 562, 1173, 2005
CfoI GCGC 4 cut(s) 562, 564, 682, 873
Cfr10I RCCGGY 1 cut(s) 2429
Cfr13I GGNCC 5 cut(s) 394, 1252, 1465, 2119, 2738
ClaI ATCGAT 1 cut(s) 111
Csp6I GTAC 8 cut(s) 497, 1258, 1515, 1530, 1672, 1745, 1874, 2439
CspAI ACCGGT 1 cut(s) 2429
CspCI CAANNNNNGTGG 2 cut(s) 1915, 1950
CviQI GTAC 8 cut(s) 497, 1258, 1515, 1530, 1672, 1745, 1874, 2439
DdeI CTNAG 6 cut(s) 438, 1032, 1418, 1560, 2012, 2521
DinI GGCGCC 1 cut(s) 872
DriI GACNNNNNGTC 2 cut(s) 820, 1419
EaeI YGGCCR 2 cut(s) 1078, 3167
Eam1104I CTCTTC 3 cut(s) 1775, 1841, 2313
Eam1105I GACNNNNNGTC 2 cut(s) 820, 1419
EarI CTCTTC 3 cut(s) 1775, 1841, 2313
EciI GGCGGA 1 cut(s) 2291
Ecl136II GAGCTC 1 cut(s) 2520
Eco130I CCWWGG 1 cut(s) 1491
Eco147I AGGCCT 2 cut(s) 1398, 1678
Eco24I GRGCYC 1 cut(s) 2522
Eco31I GGTCTC 2 cut(s) 924, 1481
Eco47I GGWCC 4 cut(s) 394, 1252, 1465, 2738
Eco53kI GAGCTC 1 cut(s) 2520
Eco57I CTGAAG 3 cut(s) 155, 2538, 3053
Eco91I GGTNACC 1 cut(s) 2713
EcoICRI GAGCTC 1 cut(s) 2520
EcoO65I GGTNACC 1 cut(s) 2713
EcoRI GAATTC 2 cut(s) 1791, 2297
EcoRII CCWGG 6 cut(s) 178, 2140, 2257, 2535, 2888, 2961
EcoT14I CCWWGG 1 cut(s) 1491
EcoT22I ATGCAT 2 cut(s) 2021, 3146
EcoT38I GRGCYC 1 cut(s) 2522
EgeI GGCGCC 1 cut(s) 872
EheI GGCGCC 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 1491
FalI AAGNNNNNCTT 4 cut(s) 1716, 1748, 2993, 3025
FaqI GGGAC 4 cut(s) 1069, 2124, 2669, 3141
FbaI TGATCA 2 cut(s) 2649, 2721
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 7 cut(s) 678, 1309, 1362, 1890, 2001, 2008, 2640
FokI GGATG 6 cut(s) 684, 1096, 1117, 1967, 2124, 2552
FriOI GRGCYC 1 cut(s) 2522
Fsp4HI GCNGC 7 cut(s) 678, 1309, 1362, 1890, 2001, 2008, 2640
FspBI CTAG 6 cut(s) 288, 1181, 1680, 1904, 2004, 2993
GlaI GCGC 4 cut(s) 561, 563, 681, 872
GluI GCNGC 7 cut(s) 678, 1309, 1362, 1890, 2001, 2008, 2640
GsaI CCCAGC 1 cut(s) 401
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 1 cut(s) 874
HaeIII GGCC 6 cut(s) 966, 1080, 1398, 1678, 2121, 3169
HapII CCGG 5 cut(s) 1081, 1255, 1468, 2202, 2430
HhaI GCGC 4 cut(s) 562, 564, 682, 873
Hin1I GRCGYC 1 cut(s) 871
Hin6I GCGC 4 cut(s) 560, 562, 680, 871
HinP1I GCGC 4 cut(s) 560, 562, 680, 871
HincII GTYRAC 2 cut(s) 167, 490
HindII GTYRAC 2 cut(s) 167, 490
HindIII AAGCTT 2 cut(s) 1596, 2378
HpaII CCGG 5 cut(s) 1081, 1255, 1468, 2202, 2430
Hpy166II GTNNAC 8 cut(s) 167, 490, 982, 1672, 1876, 1914, 1937, 2185
Hpy188I TCNGA 9 cut(s) 122, 225, 394, 1536, 1693, 2015, 2329, 2524, 3221
Hpy8I GTNNAC 8 cut(s) 167, 490, 982, 1672, 1876, 1914, 1937, 2185
Hpy99I CGWCG 1 cut(s) 1201
HpyCH4III ACNGT 5 cut(s) 737, 810, 2566, 2629, 2869
HpyCH4IV ACGT 4 cut(s) 1177, 1620, 1800, 2187
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 475, 1140, 2016, 2558
HpyF3I CTNAG 6 cut(s) 438, 1032, 1418, 1560, 2012, 2521
HpySE526I ACGT 4 cut(s) 1177, 1620, 1800, 2187
Hsp92I GRCGYC 1 cut(s) 871
HspAI GCGC 4 cut(s) 560, 562, 680, 871
KasI GGCGCC 1 cut(s) 870
Kpn2I TCCGGA 1 cut(s) 1467
KpnI GGTACC 1 cut(s) 2442
Ksp22I TGATCA 2 cut(s) 2649, 2721
LmnI GCTCC 2 cut(s) 475, 1886
Lsp1109I GCAGC 7 cut(s) 664, 1320, 1348, 1901, 2012, 2019, 2651
LweI GCATC 6 cut(s) 508, 535, 708, 1074, 2006, 2437
MaeI CTAG 6 cut(s) 288, 1181, 1680, 1904, 2004, 2993
MaeII ACGT 4 cut(s) 1177, 1620, 1800, 2187
MaeIII GTNAC 7 cut(s) 65, 1027, 1411, 1555, 1919, 2425, 2713
MfeI CAATTG 2 cut(s) 57, 3171
MflI RGATCY 4 cut(s) 1496, 1701, 2128, 2360
MhlI GDGCHC 3 cut(s) 179, 1916, 2522
MlsI TGGCCA 1 cut(s) 3169
MluNI TGGCCA 1 cut(s) 3169
Mly113I GGCGCC 1 cut(s) 871
MlyI GAGTC 2 cut(s) 1408, 2472
MmeI TCCRAC 5 cut(s) 609, 629, 707, 1739, 2644
Mox20I TGGCCA 1 cut(s) 3169
Mph1103I ATGCAT 2 cut(s) 2021, 3146
MroI TCCGGA 1 cut(s) 1467
MroXI GAANNNNTTC 2 cut(s) 1040, 3008
MscI TGGCCA 1 cut(s) 3169
MseI TTAA 4 cut(s) 1812, 1944, 2124, 2690
MslI CAYNNNNRTG 4 cut(s) 344, 2142, 2951, 3053
Msp20I TGGCCA 1 cut(s) 3169
MspA1I CMGCKG 2 cut(s) 944, 1361
MspI CCGG 5 cut(s) 1081, 1255, 1468, 2202, 2430
MspR9I CCNGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
MunI CAATTG 2 cut(s) 57, 3171
Mva1269I GAATGC 1 cut(s) 259
MvaI CCWGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 5 cut(s) 152, 475, 1140, 2016, 2558
NarI GGCGCC 1 cut(s) 871
NcoI CCATGG 1 cut(s) 1491
NheI GCTAGC 1 cut(s) 2003
NlaIV GGNNCC 5 cut(s) 396, 583, 872, 2440, 2808
NmuCI GTSAC 4 cut(s) 1027, 1411, 2425, 2713
NsiI ATGCAT 2 cut(s) 2021, 3146
NspI RCATGY 3 cut(s) 66, 159, 2272
NspV TTCGAA 3 cut(s) 38, 891, 1817
OliI CACNNNNGTG 1 cut(s) 2951
PaeI GCATGC 1 cut(s) 159
PauI GCGCGC 1 cut(s) 560
PceI AGGCCT 2 cut(s) 1398, 1678
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 2 cut(s) 1040, 3008
PflMI CCANNNNNTGG 2 cut(s) 611, 947
PfoI TCCNGGA 1 cut(s) 2535
PinAI ACCGGT 1 cut(s) 2429
PkrI GCNGC 7 cut(s) 679, 1310, 1363, 1891, 2002, 2009, 2641
PleI GAGTC 2 cut(s) 1408, 2472
PluTI GGCGCC 1 cut(s) 874
PpsI GAGTC 2 cut(s) 1408, 2472
Psp124BI GAGCTC 1 cut(s) 2522
Psp6I CCWGG 6 cut(s) 178, 2140, 2257, 2535, 2888, 2961
PspEI GGTNACC 1 cut(s) 2713
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 6 cut(s) 178, 2140, 2257, 2535, 2888, 2961
PspN4I GGNNCC 5 cut(s) 396, 583, 872, 2440, 2808
PspPI GGNCC 5 cut(s) 394, 1252, 1465, 2119, 2738
PsuI RGATCY 4 cut(s) 1496, 1701, 2128, 2360
PteI GCGCGC 1 cut(s) 560
PvuII CAGCTG 2 cut(s) 944, 1361
RsaI GTAC 8 cut(s) 498, 1259, 1516, 1531, 1673, 1746, 1875, 2440
RsaNI GTAC 8 cut(s) 497, 1258, 1515, 1530, 1672, 1745, 1874, 2439
RseI CAYNNNNRTG 4 cut(s) 344, 2142, 2951, 3053
SacI GAGCTC 1 cut(s) 2522
SaqAI TTAA 4 cut(s) 1812, 1944, 2124, 2690
SatI GCNGC 7 cut(s) 678, 1309, 1362, 1890, 2001, 2008, 2640
Sau96I GGNCC 5 cut(s) 394, 1252, 1465, 2119, 2738
SchI GAGTC 2 cut(s) 1408, 2472
ScrFI CCNGG 6 cut(s) 180, 2142, 2259, 2537, 2890, 2963
SduI GDGCHC 3 cut(s) 179, 1916, 2522
SfaNI GCATC 6 cut(s) 508, 535, 708, 1074, 2006, 2437
SfcI CTRYAG 1 cut(s) 793
SfoI GGCGCC 1 cut(s) 872
SfuI TTCGAA 3 cut(s) 38, 891, 1817
SinI GGWCC 4 cut(s) 394, 1252, 1465, 2738
SmiMI CAYNNNNRTG 4 cut(s) 344, 2142, 2951, 3053
SmlI CTYRAG 3 cut(s) 2252, 2847, 3092
SmoI CTYRAG 3 cut(s) 2252, 2847, 3092
SphI GCATGC 1 cut(s) 159
SseBI AGGCCT 2 cut(s) 1398, 1678
SsiI CCGC 4 cut(s) 2220, 2302, 2663, 3053
SspDI GGCGCC 1 cut(s) 870
SspI AATATT 1 cut(s) 888
SspMI CTAG 6 cut(s) 288, 1181, 1680, 1904, 2004, 2993
SstI GAGCTC 1 cut(s) 2522
StuI AGGCCT 2 cut(s) 1398, 1678
StyD4I CCNGG 6 cut(s) 178, 2140, 2257, 2535, 2888, 2961
StyI CCWWGG 1 cut(s) 1491
TaaI ACNGT 5 cut(s) 737, 810, 2566, 2629, 2869
TaiI ACGT 4 cut(s) 1180, 1623, 1803, 2190
TatI WGTACW 4 cut(s) 1514, 1671, 1744, 1873
Tru1I TTAA 4 cut(s) 1812, 1944, 2124, 2690
Tru9I TTAA 4 cut(s) 1812, 1944, 2124, 2690
TseFI GTSAC 4 cut(s) 1027, 1411, 2425, 2713
TseI GCWGC 7 cut(s) 677, 1308, 1361, 1889, 2000, 2007, 2639
Tsp45I GTSAC 4 cut(s) 1027, 1411, 2425, 2713
TspDTI ATGAA 9 cut(s) 334, 1121, 1556, 1565, 1593, 1725, 1977, 2109, 2599
TspGWI ACGGA 3 cut(s) 1733, 2358, 2819
Van91I CCANNNNNTGG 2 cut(s) 611, 947
VneI GTGCAC 1 cut(s) 1912
VpaK11BI GGWCC 4 cut(s) 394, 1252, 1465, 2738
XapI RAATTY 6 cut(s) 42, 52, 1791, 2297, 2343, 3098
XbaI TCTAGA 2 cut(s) 287, 1180
XceI RCATGY 3 cut(s) 66, 159, 2272
XmiI GTMKAC 1 cut(s) 981
XmnI GAANNNNTTC 2 cut(s) 1040, 3008
XspI CTAG 6 cut(s) 288, 1181, 1680, 1904, 2004, 2993
Zsp2I ATGCAT 2 cut(s) 2021, 3146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.