RchiOBHm_Chr4g0388321

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
3478557 .. 3481679
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36155

Sequence Viewer

Length: 3123 bp
ATGAGTAGGTCAACCTTCAGTGCCCTGCATGAAAAAGGGGGAAGCAATATTGGGTTGATTCTTGATGTTCCGAGAAGTAGTCTCGGCATGAGCAAAAGAAAATGGCATTCTGCTTTCATCACCATCTATTGCTTTAGAGCCTTCCTCTCTTTACGACCTTCTACTCTTCCCAAACATACCAACTCCACATTCATATCTCGCACACTCACTTACTCCATTGTTAGAGTCGAGCCAGCCTTGGTCCCAGCCATTAATGGATTCAAAGCAGACCCAAAAAGCCTCACTGAGCTTGTGAAGGAGAAAAATCTCAAAGAGCTCTTGGAGCTTGGAGGGGTTGAAGAAGTAGCATCAGCTCTCAAAACTGATGCAGAGCATGGAATCAATGGTGATGATACTGAAGACGCTGCGCGCAGACATCAAGCATTTGGTTCCAACACATACAAGAAACCGCCAACGCAAGGATTCCTTCATTTTGTGTGGGAAGCCTTCAAAGACATCACAATTCTCATTCTTTTAGGCTGTGCTGCACTCTCTCTTGGTTTTGGTATCAAAGAGCATGGATTAAAAGAAGGTTGGATTGATGGTGGAAGCATTAGTCTTGCGGTCATTCTGGTGATTTCTGTTTCAGCCATTAGCAACTACAGACAGAGCAGACAATTTGACAAATTGTCCAAGGTCAGTAGCAATCTCCAAATTGAGGCCGTGAGAAATGGAAGGCGCCAACAGATTTCAATATTTGAAATTGTGGCTGGTGATGTCATCTGCTTGAAGACTGGAGATCAAGTACCAGCAGATGGATTGCTTCTAGATGGCCATTCTTTATCAGTAGATGAATCAAGCATGACAGGGGAGAGCGACCATGTTGAGGTAAATGCCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATCGCTGATGGTTATGGCCGGATGCTTGTCACATCAGTAGGGATGAACACGAACTGGGGTGAAATGATGAGCCAAATCAGCCAAGACAACAATGAAAAGACACCTCTGCAAGAACGTTTAGACAAGCTAACTTCGTCCATAGGTAAAGTTGGTCTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCAGATACTTCACAGGGAATACAGAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACAAAATCTGATGACATAATAAATGCCATCATTGGGATTGTAGCGGCTGCCGTTACAATTGTTGTGGTGGCAATTCCAGAAGGTCTACCATTAGCTGTCACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGTCGATAATGCAATGGTGCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTGACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGGAGAAGCTTATTCATCTATTTCTCCTTATGTTCTCGACTTGATCCAAGAAGGGGTTGCTCTCAATACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCCGAAGTTGAGATCTCTGGCAGTCCAACTGAAAAAGCCATTCTTTCATGGGCGGTACATGGGTCAAAGATGGATATGGAGAAAGTGGTGAAGACTTGTAGCATTCTCCATGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTAGTGAAGAGAAAGGCAGATAACTCCAGCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGCACAAGTTACTACAATGCGTCTGGACTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGCCTCAGATGCATGGCGTTTGCATATAAACAAGTTCCAGCAGAAGAGCGACTAAATGCAGACCAGAAATTTGTATTAAAGGAAGATGGATTAACCCTATTGGGACTTGTGGGTCTTAAGGATCCATGCCGTCCGGGTGTGAAGAAAGCAGTTGACGAATGTAAATATGCAGGGGTGAATGTCAAAATGATTACTGGTGACAATGTTTTCACCGCGAAAGCCATAGCTACTGAATGTGGGATACTCGGGGCTAGTCAGGACATGTTCGGAGCAGTGATTGAAGGTGTGGAATTCCGCAACTACATGCCAGAAGAGAGACTGGAGAAAGTTGACAAAATTTGTGTGATGGCAAGGTCTTCTCCTTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTTACCGGTGACGGCACCAATGATGCACCGGCACTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTTGCCAAGGAAAGCTCGGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCTACAGTTTTGATGTGGGGAAGATGCGTGTACAATAATATCCAGAAGTTCATCCAATTCCAGCTCACTGTCAATGTTGCAGCTCTTGTGATCAACTTTGTAGCAGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTGAACTTGATCATGGACACACTTGGAGCTCTTGCTCTAGCCACAGAAAAACCAACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACAGCACCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACTGTCCTCTTGATCTTACAATTCTGGGGGAAAGCAATCTTTGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGATCTTTAATGAGTTCAATGCAAGAAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACACACCAACAAGCTGTTTATGGGGATCATCGCGGTGACAATTGTTCTTCAGGTTGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGCTGAATTGGGGACAATGGGGTGTATGCATTGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAATGTATCCCCGTTCCAGAGAAACCCATATTCAGTTATCTGAAAATGAAGAAAAATAAGCATTCTGTTTCAAATAAACTGGCCCGATAA

Protein Analysis

1040

Amino Acids

114.05

Weight (kDa)

8.42

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 109 - 178 2.8e-15 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 233 - 329 1.2e-21 P-type ATPase actuator domain
Hydrolase PF00702 452 - 773 1.3e-14 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 492 - 663 6.4e-29 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 844 - 1013 2.2e-49 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1965
Acc36I ACCTGC 1 cut(s) 2513
AccB1I GGYRCC 2 cut(s) 717, 2285
AccB7I CCANNNNNTGG 1 cut(s) 794
AccI GTMKAC 1 cut(s) 1246
AccII CGCG 3 cut(s) 409, 2069, 2900
AciI CCGC 8 cut(s) 449, 602, 1205, 1315, 1589, 2067, 2149, 2900
AclI AACGTT 1 cut(s) 1024
AclWI GGATC 5 cut(s) 1351, 1474, 1970, 1983, 2900
AcoI YGGCCR 3 cut(s) 811, 925, 3014
AcsI RAATTY 4 cut(s) 1922, 2144, 2190, 2945
AcuI CTGAAG 3 cut(s) 417, 2385, 2900
AcyI GRCGYC 1 cut(s) 718
AfaI GTAC 9 cut(s) 786, 1148, 1363, 1378, 1520, 1593, 1722, 2438, 2705
AfiI CCNNNNNNNGG 8 cut(s) 458, 697, 794, 865, 1194, 1399, 1489, 2642
AflII CTTAAG 1 cut(s) 1970
AflIII ACRYGT 1 cut(s) 2115
AgeI ACCGGT 1 cut(s) 2276
AhdI GACNNNNNGTC 1 cut(s) 667
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AleI CACNNNNGTG 1 cut(s) 2798
Alw21I GWGCWC 3 cut(s) 318, 1763, 2590
Alw26I GTCTC 3 cut(s) 86, 1328, 2164
Alw44I GTGCAC 1 cut(s) 1759
AlwI GGATC 5 cut(s) 1351, 1474, 1970, 1983, 2900
Ama87I CYCGRG 1 cut(s) 2099
AoxI GGCC 6 cut(s) 699, 811, 925, 1523, 3014, 3114
ApaLI GTGCAC 1 cut(s) 1759
ApeKI GCWGC 9 cut(s) 404, 524, 1155, 1208, 1736, 1847, 1854, 2486, 2510
ApoI RAATTY 4 cut(s) 1922, 2144, 2190, 2945
ArsI GACNNNNNNTTYG 2 cut(s) 1907, 1939
AseI ATTAAT 1 cut(s) 252
AsiGI ACCGGT 1 cut(s) 2276
Asp700I GAANNNNTTC 2 cut(s) 887, 2855
AspLEI GCGC 3 cut(s) 409, 411, 720
AspS9I GGNCC 2 cut(s) 241, 3115
AsuC2I CCSGG 1 cut(s) 1989
AsuII TTCGAA 1 cut(s) 1664
AsuNHI GCTAGC 1 cut(s) 1850
AvaI CYCGRG 1 cut(s) 2099
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 2 cut(s) 25, 1763
BaeI ACNNNNGTAYC 2 cut(s) 1583, 1616
BalI TGGCCA 2 cut(s) 813, 3016
BamHI GGATCC 1 cut(s) 1975
BanI GGYRCC 2 cut(s) 717, 2285
BanII GRGCYC 2 cut(s) 318, 2590
BbsI GAAGAC 5 cut(s) 405, 776, 1634, 2202, 2848
Bbv12I GWGCWC 3 cut(s) 318, 1763, 2590
BbvI GCAGC 9 cut(s) 391, 511, 1167, 1195, 1748, 1859, 1866, 2498, 2522
BceAI ACGGC 4 cut(s) 686, 1196, 1968, 2299
BciVI GTATCC 2 cut(s) 2088, 3050
BclI TGATCA 3 cut(s) 2379, 2496, 2568
BcnI CCSGG 1 cut(s) 1989
BcoDI GTCTC 3 cut(s) 86, 1328, 2164
BfaI CTAG 9 cut(s) 806, 1527, 1688, 1751, 1851, 2106, 2597, 2840, 3029
BfmI CTRYAG 2 cut(s) 640, 2409
BfoI RGCGCY 1 cut(s) 721
BfrI CTTAAG 1 cut(s) 1970
BfuAI ACCTGC 1 cut(s) 2513
BfuI GTATCC 2 cut(s) 2088, 3050
BglII AGATCT 2 cut(s) 1548, 2811
Bme1390I CCNGG 1 cut(s) 1989
Bme18I GGWCC 1 cut(s) 241
BmeRI GACNNNNNGTC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 2099
BmgT120I GGNCC 2 cut(s) 241, 3115
BmiI GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
BmrFI CCNGG 1 cut(s) 1989
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 6 cut(s) 355, 356, 921, 1853, 2284, 2420
BmtI GCTAGC 1 cut(s) 1854
BmuI ACTGGG 1 cut(s) 973
BpiI GAAGAC 5 cut(s) 405, 776, 1634, 2202, 2848
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BpmI CTGGAG 3 cut(s) 795, 1696, 2195
Bpu14I TTCGAA 1 cut(s) 1664
BpuEI CTTGAG 2 cut(s) 2679, 2924
BpuMI CCSGG 1 cut(s) 1989
BsaHI GRCGYC 1 cut(s) 718
BsaI GGTCTC 1 cut(s) 1328
BsaJI CCNNGG 4 cut(s) 237, 672, 1338, 2358
BsaWI WCCGGW 1 cut(s) 2276
BsaXI ACNNNNNCTCC 4 cut(s) 768, 798, 1674, 1704
Bsc4I CCNNNNNNNGG 8 cut(s) 458, 697, 794, 865, 1194, 1399, 1489, 2642
Bse118I RCCGGY 2 cut(s) 2276, 2299
Bse1I ACTGG 8 cut(s) 778, 968, 1513, 1730, 2053, 2178, 2639, 3117
Bse3DI GCAATG 3 cut(s) 1314, 1761, 2246
BseDI CCNNGG 4 cut(s) 237, 672, 1338, 2358
BseGI GGATG 6 cut(s) 936, 957, 1132, 1807, 2392, 2457
BseLI CCNNNNNNNGG 8 cut(s) 458, 697, 794, 865, 1194, 1399, 1489, 2642
BseMI GCAATG 3 cut(s) 1314, 1761, 2246
BseMII CTCAG 3 cut(s) 276, 870, 1873
BseNI ACTGG 8 cut(s) 778, 968, 1513, 1730, 2053, 2178, 2639, 3117
BsePI GCGCGC 1 cut(s) 407
BseSI GKGCMC 2 cut(s) 25, 1763
BseXI GCAGC 9 cut(s) 391, 511, 1167, 1195, 1748, 1859, 1866, 2498, 2522
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 3 cut(s) 409, 2069, 2900
BshFI GGCC 6 cut(s) 701, 813, 927, 1525, 3016, 3116
BshNI GGYRCC 2 cut(s) 717, 2285
BshTI ACCGGT 1 cut(s) 2276
BsiHKAI GWGCWC 3 cut(s) 318, 1763, 2590
BsiHKCI CYCGRG 1 cut(s) 2099
BsiSI CCGG 4 cut(s) 928, 1988, 2277, 2300
BslFI GGGAC 5 cut(s) 227, 916, 1971, 2516, 2988
BslI CCNNNNNNNGG 8 cut(s) 458, 697, 794, 865, 1194, 1399, 1489, 2642
BsmAI GTCTC 3 cut(s) 86, 1328, 2164
BsmFI GGGAC 5 cut(s) 227, 916, 1971, 2516, 2988
BsmI GAATGC 3 cut(s) 106, 1638, 3094
BsnI GGCC 6 cut(s) 701, 813, 927, 1525, 3016, 3116
Bso31I GGTCTC 1 cut(s) 1328
BsoBI CYCGRG 1 cut(s) 2099
Bsp119I TTCGAA 1 cut(s) 1664
Bsp1286I GDGCHC 4 cut(s) 25, 318, 1763, 2590
Bsp1407I TGTACA 3 cut(s) 1518, 1720, 2436
Bsp19I CCATGG 1 cut(s) 1338
BspACI CCGC 8 cut(s) 449, 602, 1205, 1315, 1589, 2067, 2149, 2900
BspANI GGCC 6 cut(s) 701, 813, 927, 1525, 3016, 3116
BspCNI CTCAG 3 cut(s) 277, 871, 1872
BspFNI CGCG 3 cut(s) 409, 2069, 2900
BspLI GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
BspMI ACCTGC 1 cut(s) 2513
BspOI GCTAGC 1 cut(s) 1854
BspPI GGATC 5 cut(s) 1351, 1474, 1970, 1983, 2900
BspQI GCTCTTC 1 cut(s) 1893
BspT104I TTCGAA 1 cut(s) 1664
BspT107I GGYRCC 2 cut(s) 717, 2285
BspTI CTTAAG 1 cut(s) 1970
BspTNI GGTCTC 1 cut(s) 1328
BsrDI GCAATG 3 cut(s) 1314, 1761, 2246
BsrFI RCCGGY 2 cut(s) 2276, 2299
BsrGI TGTACA 3 cut(s) 1518, 1720, 2436
BsrI ACTGG 8 cut(s) 778, 968, 1513, 1730, 2053, 2178, 2639, 3117
BssAI RCCGGY 2 cut(s) 2276, 2299
BssECI CCNNGG 4 cut(s) 237, 672, 1338, 2358
BssHII GCGCGC 1 cut(s) 407
BssNI GRCGYC 1 cut(s) 718
BssT1I CCWWGG 4 cut(s) 237, 672, 1338, 2358
Bst4CI ACNGT 4 cut(s) 2413, 2476, 2703, 2716
Bst6I CTCTTC 5 cut(s) 171, 1280, 1688, 1893, 2160
BstACI GRCGYC 1 cut(s) 718
BstAFI CTTAAG 1 cut(s) 1970
BstAUI TGTACA 3 cut(s) 1518, 1720, 2436
BstBI TTCGAA 1 cut(s) 1664
BstC8I GCNNGC 3 cut(s) 234, 409, 1852
BstDEI CTNAG 4 cut(s) 285, 879, 1407, 1859
BstDSI CCRYGG 1 cut(s) 1338
BstF5I GGATG 6 cut(s) 936, 957, 1132, 1807, 2392, 2457
BstFNI CGCG 3 cut(s) 409, 2069, 2900
BstH2I RGCGCY 1 cut(s) 721
BstHHI GCGC 3 cut(s) 409, 411, 720
BstMAI GTCTC 3 cut(s) 86, 1328, 2164
BstMWI GCNNNNNNNGC 5 cut(s) 322, 987, 1863, 2405, 2519
BstNSI RCATGY 2 cut(s) 2119, 2161
BstSCI CCNGG 1 cut(s) 1987
BstSFI CTRYAG 2 cut(s) 640, 2409
BstSLI GKGCMC 2 cut(s) 25, 1763
BstUI CGCG 3 cut(s) 409, 2069, 2900
BstV1I GCAGC 9 cut(s) 391, 511, 1167, 1195, 1748, 1859, 1866, 2498, 2522
BstV2I GAAGAC 5 cut(s) 405, 776, 1634, 2202, 2848
BstX2I RGATCY 4 cut(s) 1343, 1548, 1975, 2811
BstXI CCANNNNNNTGG 1 cut(s) 3024
BstYI RGATCY 4 cut(s) 1343, 1548, 1975, 2811
BsuI GTATCC 2 cut(s) 2088, 3050
BsuRI GGCC 6 cut(s) 701, 813, 927, 1525, 3016, 3116
BtgI CCRYGG 1 cut(s) 1338
BtgZI GCGATG 1 cut(s) 2881
BtsCI GGATG 6 cut(s) 936, 957, 1132, 1807, 2392, 2457
BtsI GCAGTG 1 cut(s) 2133
BveI ACCTGC 1 cut(s) 2513
Cac8I GCNNGC 3 cut(s) 234, 409, 1852
CfoI GCGC 3 cut(s) 409, 411, 720
Cfr10I RCCGGY 2 cut(s) 2276, 2299
Cfr13I GGNCC 2 cut(s) 241, 3115
CseI GACGC 2 cut(s) 410, 1767
Csp6I GTAC 9 cut(s) 785, 1147, 1362, 1377, 1519, 1592, 1721, 2437, 2704
CspAI ACCGGT 1 cut(s) 2276
CspCI CAANNNNNGTGG 2 cut(s) 1206, 1241
CviQI GTAC 9 cut(s) 785, 1147, 1362, 1377, 1519, 1592, 1721, 2437, 2704
DdeI CTNAG 4 cut(s) 285, 879, 1407, 1859
DinI GGCGCC 1 cut(s) 719
DrdI GACNNNNNNGTC 1 cut(s) 1965
DriI GACNNNNNGTC 1 cut(s) 667
DseDI GACNNNNNNGTC 1 cut(s) 1965
EaeI YGGCCR 3 cut(s) 811, 925, 3014
Eam1104I CTCTTC 5 cut(s) 171, 1280, 1688, 1893, 2160
Eam1105I GACNNNNNGTC 1 cut(s) 667
EarI CTCTTC 5 cut(s) 171, 1280, 1688, 1893, 2160
Ecl136II GAGCTC 2 cut(s) 316, 2588
Eco130I CCWWGG 4 cut(s) 237, 672, 1338, 2358
Eco147I AGGCCT 1 cut(s) 1525
Eco24I GRGCYC 2 cut(s) 318, 2590
Eco31I GGTCTC 1 cut(s) 1328
Eco47I GGWCC 1 cut(s) 241
Eco53kI GAGCTC 2 cut(s) 316, 2588
Eco57I CTGAAG 3 cut(s) 417, 2385, 2900
Eco88I CYCGRG 1 cut(s) 2099
EcoICRI GAGCTC 2 cut(s) 316, 2588
EcoRI GAATTC 1 cut(s) 2144
EcoT14I CCWWGG 4 cut(s) 237, 672, 1338, 2358
EcoT22I ATGCAT 2 cut(s) 1868, 2993
EcoT38I GRGCYC 2 cut(s) 318, 2590
EgeI GGCGCC 1 cut(s) 719
EheI GGCGCC 1 cut(s) 719
ErhI CCWWGG 4 cut(s) 237, 672, 1338, 2358
FalI AAGNNNNNCTT 6 cut(s) 450, 482, 1563, 1595, 2840, 2872
FaqI GGGAC 5 cut(s) 227, 916, 1971, 2516, 2988
FbaI TGATCA 3 cut(s) 2379, 2496, 2568
FblI GTMKAC 1 cut(s) 1246
FokI GGATG 6 cut(s) 943, 964, 1139, 1814, 2399, 2444
FriOI GRGCYC 2 cut(s) 318, 2590
FspBI CTAG 9 cut(s) 806, 1527, 1688, 1751, 1851, 2106, 2597, 2840, 3029
GlaI GCGC 3 cut(s) 408, 410, 719
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 3 cut(s) 795, 1696, 2195
HaeII RGCGCY 1 cut(s) 721
HaeIII GGCC 6 cut(s) 701, 813, 927, 1525, 3016, 3116
HapII CCGG 4 cut(s) 928, 1988, 2277, 2300
HgaI GACGC 2 cut(s) 410, 1767
HhaI GCGC 3 cut(s) 409, 411, 720
Hin1I GRCGYC 1 cut(s) 718
Hin6I GCGC 3 cut(s) 407, 409, 718
HinP1I GCGC 3 cut(s) 407, 409, 718
HincII GTYRAC 3 cut(s) 12, 2008, 2185
HindII GTYRAC 3 cut(s) 12, 2008, 2185
HindIII AAGCTT 2 cut(s) 1443, 2225
HpaII CCGG 4 cut(s) 928, 1988, 2277, 2300
Hpy166II GTNNAC 9 cut(s) 12, 1247, 1519, 1723, 1761, 2008, 2185, 2437, 2563
Hpy188I TCNGA 9 cut(s) 72, 1103, 1171, 1383, 1540, 1862, 2123, 2371, 3075
Hpy8I GTNNAC 9 cut(s) 12, 1247, 1519, 1723, 1761, 2008, 2185, 2437, 2563
HpyCH4III ACNGT 4 cut(s) 2413, 2476, 2703, 2716
HpyCH4IV ACGT 1 cut(s) 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 987, 1863, 2405, 2519
HpyF3I CTNAG 4 cut(s) 285, 879, 1407, 1859
HpySE526I ACGT 1 cut(s) 1024
Hsp92I GRCGYC 1 cut(s) 718
HspAI GCGC 3 cut(s) 407, 409, 718
KasI GGCGCC 1 cut(s) 717
Ksp22I TGATCA 3 cut(s) 2379, 2496, 2568
LguI GCTCTTC 1 cut(s) 1893
LmnI GCTCC 4 cut(s) 322, 1733, 2123, 2585
Lsp1109I GCAGC 9 cut(s) 391, 511, 1167, 1195, 1748, 1859, 1866, 2498, 2522
LweI GCATC 6 cut(s) 355, 356, 921, 1853, 2284, 2420
MaeI CTAG 9 cut(s) 806, 1527, 1688, 1751, 1851, 2106, 2597, 2840, 3029
MaeII ACGT 1 cut(s) 1024
MaeIII GTNAC 9 cut(s) 937, 1213, 1258, 1402, 1766, 2051, 2272, 2279, 2902
MfeI CAATTG 3 cut(s) 1218, 2907, 3018
MflI RGATCY 4 cut(s) 1343, 1548, 1975, 2811
MhlI GDGCHC 4 cut(s) 25, 318, 1763, 2590
MlsI TGGCCA 2 cut(s) 813, 3016
MluNI TGGCCA 2 cut(s) 813, 3016
Mly113I GGCGCC 1 cut(s) 718
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 3 cut(s) 456, 554, 1586
Mox20I TGGCCA 2 cut(s) 813, 3016
Mph1103I ATGCAT 2 cut(s) 1868, 2993
MroXI GAANNNNTTC 2 cut(s) 887, 2855
MscI TGGCCA 2 cut(s) 813, 3016
MseI TTAA 9 cut(s) 252, 563, 1659, 1791, 1931, 1946, 1971, 2537, 2817
MslI CAYNNNNRTG 3 cut(s) 611, 2798, 2900
Msp20I TGGCCA 2 cut(s) 813, 3016
MspCI CTTAAG 1 cut(s) 1970
MspI CCGG 4 cut(s) 928, 1988, 2277, 2300
MspR9I CCNGG 1 cut(s) 1989
MunI CAATTG 3 cut(s) 1218, 2907, 3018
Mva1269I GAATGC 3 cut(s) 106, 1638, 3094
MvnI CGCG 3 cut(s) 409, 2069, 2900
MwoI GCNNNNNNNGC 5 cut(s) 322, 987, 1863, 2405, 2519
NarI GGCGCC 1 cut(s) 718
NciI CCSGG 1 cut(s) 1989
NcoI CCATGG 1 cut(s) 1338
NheI GCTAGC 1 cut(s) 1850
NlaIV GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 6 cut(s) 937, 1258, 1402, 2051, 2279, 2902
NsiI ATGCAT 2 cut(s) 1868, 2993
NspI RCATGY 2 cut(s) 2119, 2161
NspV TTCGAA 1 cut(s) 1664
OliI CACNNNNGTG 1 cut(s) 2798
PauI GCGCGC 1 cut(s) 407
PceI AGGCCT 1 cut(s) 1525
PciI ACATGT 1 cut(s) 2115
PciSI GCTCTTC 1 cut(s) 1893
PctI GAATGC 3 cut(s) 106, 1638, 3094
PdmI GAANNNNTTC 2 cut(s) 887, 2855
PfeI GAWTC 9 cut(s) 58, 258, 378, 462, 833, 883, 1427, 1535, 2338
PflMI CCANNNNNTGG 1 cut(s) 794
PinAI ACCGGT 1 cut(s) 2276
PleI GAGTC 1 cut(s) 233
PluTI GGCGCC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 233
PscI ACATGT 1 cut(s) 2115
PshBI ATTAAT 1 cut(s) 252
Psp124BI GAGCTC 2 cut(s) 318, 2590
Psp1406I AACGTT 1 cut(s) 1024
PspFI CCCAGC 1 cut(s) 244
PspN4I GGNNCC 6 cut(s) 243, 430, 719, 1977, 2287, 2684
PspPI GGNCC 2 cut(s) 241, 3115
PsuI RGATCY 4 cut(s) 1343, 1548, 1975, 2811
PteI GCGCGC 1 cut(s) 407
RsaI GTAC 9 cut(s) 786, 1148, 1363, 1378, 1520, 1593, 1722, 2438, 2705
RsaNI GTAC 9 cut(s) 785, 1147, 1362, 1377, 1519, 1592, 1721, 2437, 2704
RseI CAYNNNNRTG 3 cut(s) 611, 2798, 2900
SacI GAGCTC 2 cut(s) 318, 2590
SapI GCTCTTC 1 cut(s) 1893
SaqAI TTAA 9 cut(s) 252, 563, 1659, 1791, 1931, 1946, 1971, 2537, 2817
Sau96I GGNCC 2 cut(s) 241, 3115
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 1989
SduI GDGCHC 4 cut(s) 25, 318, 1763, 2590
SfaNI GCATC 6 cut(s) 355, 356, 921, 1853, 2284, 2420
SfcI CTRYAG 2 cut(s) 640, 2409
SfoI GGCGCC 1 cut(s) 719
SfuI TTCGAA 1 cut(s) 1664
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 3 cut(s) 611, 2798, 2900
SmlI CTYRAG 3 cut(s) 1970, 2694, 2939
SmoI CTYRAG 3 cut(s) 1970, 2694, 2939
SseBI AGGCCT 1 cut(s) 1525
SsiI CCGC 8 cut(s) 449, 602, 1205, 1315, 1589, 2067, 2149, 2900
SspDI GGCGCC 1 cut(s) 717
SspI AATATT 2 cut(s) 49, 735
SspMI CTAG 9 cut(s) 806, 1527, 1688, 1751, 1851, 2106, 2597, 2840, 3029
SstI GAGCTC 2 cut(s) 318, 2590
StuI AGGCCT 1 cut(s) 1525
StyD4I CCNGG 1 cut(s) 1987
StyI CCWWGG 4 cut(s) 237, 672, 1338, 2358
TaaI ACNGT 4 cut(s) 2413, 2476, 2703, 2716
TaiI ACGT 1 cut(s) 1027
TaqI TCGA 5 cut(s) 228, 1299, 1473, 1650, 1664
TatI WGTACW 4 cut(s) 1146, 1518, 1720, 2436
TauI GCSGC 1 cut(s) 1208
TfiI GAWTC 9 cut(s) 58, 258, 378, 462, 833, 883, 1427, 1535, 2338
Tru1I TTAA 9 cut(s) 252, 563, 1659, 1791, 1931, 1946, 1971, 2537, 2817
Tru9I TTAA 9 cut(s) 252, 563, 1659, 1791, 1931, 1946, 1971, 2537, 2817
TseFI GTSAC 6 cut(s) 937, 1258, 1402, 2051, 2279, 2902
TseI GCWGC 9 cut(s) 404, 524, 1155, 1208, 1736, 1847, 1854, 2486, 2510
Tsp45I GTSAC 6 cut(s) 937, 1258, 1402, 2051, 2279, 2902
Van91I CCANNNNNTGG 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 1970
VneI GTGCAC 1 cut(s) 1759
VpaK11BI GGWCC 1 cut(s) 241
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 4 cut(s) 1922, 2144, 2190, 2945
XbaI TCTAGA 1 cut(s) 805
XceI RCATGY 2 cut(s) 2119, 2161
XmiI GTMKAC 1 cut(s) 1246
XmnI GAANNNNTTC 2 cut(s) 887, 2855
XspI CTAG 9 cut(s) 806, 1527, 1688, 1751, 1851, 2106, 2597, 2840, 3029
Zsp2I ATGCAT 2 cut(s) 1868, 2993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.