pycom03g20400

This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
20889583 .. 20889996
414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20400.1

Sequence Viewer

Length: 255 bp
ATGGTAAGCAGCAGCGACACGGCCTACAATTGTGGCCCATCGCTCCTTGACGACCTTGACACCGCCCTCCGAGCTAAGAGGAGGTGGCGGATGGCCTTTTTGGCGTTACGTGTTGTCCGTGTCATGCTTGAGCGTCCCAGAGAGATAGTATCCAATCACTACAGTTTAGTGTCCGACGTTGATGATCGTGAAGATGCTGGTCTTGCAGAAACTGTGAAGGAAAAGAACTTGGCTGCTGCAAAAAGAAATGAATAA

Protein Analysis

85

Amino Acids

9.51

Weight (kDa)

6.58

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 88
AflIII ACRYGT 1 cut(s) 109
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 3 cut(s) 21, 34, 93
ApeKI GCWGC 4 cut(s) 9, 12, 233, 236
AspS9I GGNCC 1 cut(s) 35
BbvI GCAGC 4 cut(s) 21, 24, 220, 223
BccI CCATC 2 cut(s) 46, 85
BceAI ACGGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 160
BfuI GTATCC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 10, 13, 234, 237
BlsI GCNGC 4 cut(s) 11, 14, 235, 238
BmgT120I GGNCC 1 cut(s) 35
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 110
BseGI GGATG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 21, 24, 220, 223
BshFI GGCC 3 cut(s) 23, 36, 95
BslFI GGGAC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 120
BsnI GGCC 3 cut(s) 23, 36, 95
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 63, 88
BspANI GGCC 3 cut(s) 23, 36, 95
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 164, 214
BstBAI YACGTR 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 96
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 71, 101, 203
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 4 cut(s) 21, 24, 220, 223
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 3 cut(s) 23, 36, 95
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 35
CseI GACGC 1 cut(s) 122
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 23, 36, 74, 95, 233
CviKI_1 RGCY 5 cut(s) 23, 36, 74, 95, 233
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 103
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 10, 13, 234, 237
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 10, 13, 234, 237
GluI GCNGC 4 cut(s) 10, 13, 234, 237
HaeIII GGCC 3 cut(s) 23, 36, 95
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 71, 175
Hpy188III TCNNGA 1 cut(s) 188
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 164, 214
HpyCH4IV ACGT 2 cut(s) 109, 177
HpyCH4V TGCA 2 cut(s) 206, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 101, 203
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 2 cut(s) 109, 177
Hsp92II CATG 1 cut(s) 127
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 151, 183
Lsp1109I GCAGC 4 cut(s) 21, 24, 220, 223
LweI GCATC 1 cut(s) 184
MaeII ACGT 2 cut(s) 109, 177
MaeIII GTNAC 1 cut(s) 105
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 203
MfeI CAATTG 1 cut(s) 28
MluCI AATT 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 72, 75, 77
MunI CAATTG 1 cut(s) 28
MwoI GCNNNNNNNGC 3 cut(s) 71, 101, 203
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PkrI GCNGC 4 cut(s) 11, 14, 235, 238
Ppu21I YACGTR 1 cut(s) 110
PspPI GGNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 212
SatI GCNGC 4 cut(s) 10, 13, 234, 237
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 35
SetI ASST 5 cut(s) 57, 76, 86, 112, 180
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 28
SsiI CCGC 2 cut(s) 63, 88
TaaI ACNGT 2 cut(s) 164, 214
TaiI ACGT 2 cut(s) 112, 180
TasI AATT 1 cut(s) 28
TseI GCWGC 4 cut(s) 9, 12, 233, 236
TspGWI ACGGA 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.