Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

2954604 .. 2955140

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGACACACTAGGTGCTCTGGCTCTCGCCACAGAGAAGCCAACGAAAGAGCTCATGAAGAAAATGCCGGTCGGGAGGACAGAGCCTCTGATCACCAACATAATGTGGAGGAACCTTCTGCCTCAAGCACTCTACCAGATTGCAATCCTCCTGACATTGCAGTTCAAAGGAAAATCGATCTTCGGCGTGGATGACAAGGTGAAGGACAGATTGATCTTCAACACATTCGTGCTGTGCCAGGTGTTCAATGAGTTCAATGCAAGGAAACTTGAGAAGAAGAATGTGTTCAGAGGAATCCACACCAACAAGTTGTTTCTGGGGATTATTGGTGTCACTATTTTGCTGCAGGTGGTGATGGTGGAGTTTTTGAAGAAGTTTGCAGATACAGAAAGGTTGAATTGGGGGCAGTGGGGTGCTTGTGTTGGTATTGCAGCAGTATCTTGGCCAATTGGTTGGGTTGTCAAGTCTATTCCTGTTCCTGAGACACTTATTTTCAGCTATCTCAAGTGGAAGAAGTCGAAGAAGAACTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

179

Amino Acids

20.39

Weight (kDa)

9.9

Isoelectric Point (pI)

19.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	1 - 156	3.6e-39	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	443
AdeI	CACNNNGTG	1 cut(s)	14
AgsI	TTSAA	6 cut(s)	166, 220, 247, 256, 370, 397
AjnI	CCWGG	1 cut(s)	237
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	2 cut(s)	52, 498
AluI	AGCT	2 cut(s)	52, 498
Alw21I	GWGCWC	2 cut(s)	19, 54
Alw26I	GTCTC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	343, 431
Asp700I	GAANNNNTTC	1 cut(s)	284
AsuHPI	GGTGA	3 cut(s)	85, 211, 364
BalI	TGGCCA	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	19, 54
BbvI	GCAGC	2 cut(s)	330, 443
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	239
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	344, 432
BlsI	GCNGC	2 cut(s)	345, 433
Bme1390I	CCNGG	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	239
BpuEI	CTTGAG	3 cut(s)	108, 290, 488
Bsa29I	ATCGAT	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	155
Bse8I	GATNNNNATC	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	176
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	330, 443
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	445
BshVI	ATCGAT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	2 cut(s)	19, 54
BsiSI	CCGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	19, 54
Bsp143I	GATC	3 cut(s)	90, 177, 213
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	1 cut(s)	472
BspDI	ATCGAT	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssMI	GATC	3 cut(s)	90, 177, 213
Bst2UI	CCWGG	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	3 cut(s)	93, 180, 216
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	90, 177, 213
BstMCI	CGRYCG	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	2 cut(s)	330, 443
BstXI	CCANNNNNNTGG	1 cut(s)	453
Bsu15I	ATCGAT	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	445
BsuTUI	ATCGAT	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	413
BveI	ACCTGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	67
ClaI	ATCGAT	1 cut(s)	176
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	6 cut(s)	23, 40, 52, 85, 445, 498
CviKI_1	RGCY	6 cut(s)	23, 40, 52, 85, 445, 498
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	3 cut(s)	92, 179, 215
DpnII	GATC	3 cut(s)	90, 177, 213
DraIII	CACNNNGTG	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	58
FaiI	YATR	3 cut(s)	56, 101, 531
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	344, 432
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	344, 432
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	2 cut(s)	344, 432
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	3 cut(s)	85, 211, 364
Hpy188I	TCNGA	2 cut(s)	90, 290
Hpy188III	TCNNGA	4 cut(s)	55, 73, 151, 479
HpyAV	CCTTC	2 cut(s)	125, 196
HpyCH4V	TGCA	6 cut(s)	143, 160, 260, 346, 380, 431
HpyF3I	CTNAG	1 cut(s)	480
Hsp92II	CATG	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 177, 213
Lsp1109I	GCAGC	2 cut(s)	330, 443
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	92, 179, 215
MboI	GATC	3 cut(s)	90, 177, 213
MboII	GAAGA	9 cut(s)	70, 172, 208, 286, 289, 382, 523, 532, 535
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	19, 54
MlsI	TGGCCA	1 cut(s)	445
MluCI	AATT	2 cut(s)	397, 447
MluNI	TGGCCA	1 cut(s)	445
MnlI	CCTC	6 cut(s)	69, 96, 102, 132, 158, 284
Mox20I	TGGCCA	1 cut(s)	445
MroXI	GAANNNNTTC	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	445
MslI	CAYNNNNRTG	1 cut(s)	227
Msp20I	TGGCCA	1 cut(s)	445
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	239
NdeII	GATC	3 cut(s)	90, 177, 213
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	345, 433
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	2 cut(s)	344, 432
Sau3AI	GATC	3 cut(s)	90, 177, 213
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	19, 54
SetI	ASST	8 cut(s)	16, 54, 117, 201, 243, 351, 395, 500
SfcI	CTRYAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	123, 269, 503
SmoI	CTYRAG	3 cut(s)	123, 269, 503
Sse9I	AATT	2 cut(s)	397, 447
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	237
TaqI	TCGA	2 cut(s)	176, 518
TasI	AATT	2 cut(s)	397, 447
TfiI	GAWTC	1 cut(s)	294
TscAI	CASTG	1 cut(s)	413
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	343, 431
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	284
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.