RLG00000010039

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
61986769 .. 61990364
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010039

Sequence Viewer

Length: 3231 bp
ATGGTGGACGAATATGGCGAAAATACCGGTTCAACTGCATCTATTCGATTCATAGTTCATGCAGAAAATACCGGACAGAAAATTACCAAGAAATTACAAGTGCGTAAATTGCTACTTGCACAAAGCATGTCAAAAGCTACCAGGCTGCATGCAAAATTTGGGAGAATTGAATTGCTGCTTGATGTTCCCAGCAGTAGTCTAGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCCTCACCATATACTGCTCTAGAGCCTTCCTGTCTTTACCACCTTCTTCTCAACCCAAAGACACCAAAGCCACAAAAGCCACATTCTTATCGCGCACAGTCTCATACTCCATTGTTAGTGTTGAATCAGTTTCTGTGCCATCCATTAATGGCTTCAAAGCTGATCAAAAATGCCTCACTGAGCTAGTGAAGGAGAAAAAACTCAACCAGCTTCTGGAGCGGGGAGGGGTTGAAGAAGTGGCATCAGCTCTCAAAACTGATGCAGTGTACGGAATTAATGGTGATGACGCTGACGACATTGCCTCCAGGCATGAAGCATTTGGTTCCAATACATACAAGAAACCTCCAACGCAAGGATTCCTCCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAATCCTAATCCTCTTGGGATGTGCTGCGCTTTCTCTTGGTTTCGGGATCAAAGAGCATGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTCGCGGTCATTCTGGTCATTTCTGTATCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGCTGTCGAAAGTCAGCAACAATCTCCAGATTGAGGCTGTGAGAAATGGAAGGCGCCAACTGATTTCAATATTCGAAATTGTAGTGGGTGACGTCATCTGCTTGAAAATTGGAGATCAAGTTCCAGCTGATGGATTACTTCTAGAAGGCCACTCTTTATCAGTAGACGAATCAAGCATGACAGGGGAGAGCGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATAGCTGATGGTTATGGTCGCATGCTTGTCACATCAGTTGGGATGAACACGAATTGGGGTGAAATGATGAGCCAAATTAGCCATGACACCAGTGAAAAGACACCCCTGCAAGCACGTCTAGACAAGCTAACTTCTTCGATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCAGATACTTCACAGGGAACACCGTGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACCAAATCTGATGACATAATAAACGCTGTCATTGGGATTGTAGCAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCGTATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGACAAAACAGGTACTCTGACCATGAACCAGATGAAGGTAACCAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTATGTTCTCAACTTGATCCAAGAAGGGGTTTCTCTCAACACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCTGAAATTGAGATCTCTGGCAGTCCAACTGAAAAGGCTATTCTTTCATGGGCTGTACATGGGTCGAAGATGGATATGGAGAAAATGGGGAAGAGTTGTAGCATTCTCCACGTCGAAGCTTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAAGCAGATAATTCAATCCATGTACACTGGAAAGGAGCAGCAGAGATGGTACTAGCAATGTGCAAAAGTTACTACAGCGCCACTGGAGTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAACAAATTATTCAAGGTATGGCAGCTAGCAGTCTCAGATGCATAGCATTTGCACATAAACAAGTTCCAGCAGAGGAGCAACTAAATGCAGACCAGAAAGTTTTGCTGAAGGAAGATGGCTTGACCCTACTGGGACTTGTGGGCCTTAAAGATCCATGTCGTCCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTCGGAGCAGTGATAGAAGGTGTCGAATTTCGCAACTACACTCCAGAACAGAGAATGGAGAAAGTTGAGAAAATTTCTGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACTGGTGATGGCACCAATGATGCACCGGCATTGAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCATCGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAACCCACAAGAGAACTTATGGAGAAGCCACCAGTGGGAAGGACAGCACCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAAATAACAGTCCTATTGATCTTACAATTCAGAGGCAAAGCAATCTTTGATGTCAGTGATAAGGTAAAGGACACATTGATATTCAACACTTTTGTGCTTTGCCAGGTTTTCAATGAGTTCAATGCAAGGAAGCTAGAGAAGAAGAATGTCTTCAAGGGAATACATACCAATAAGTTGTTTATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCACAGAAAACCATTTTCAGCTATCTGAAGATGAAGAAAAATAAGCACCCCAGATGA

Protein Analysis

1077

Amino Acids

117.96

Weight (kDa)

8.76

Isoelectric Point (pI)

28.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 151 - 220 6.9e-13 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 276 - 371 1.2e-20 P-type ATPase actuator domain
Cation_ATPase PF13246 534 - 705 3.4e-28 P-type ATPase, cytoplasmic domain N
Hydrolase PF00702 670 - 815 4.7e-12 haloacid dehalogenase-like hydrolase
Cation_ATPase_C PF00689 886 - 1055 4.4e-48 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 885
Acc36I ACCTGC 1 cut(s) 2639
AccB1I GGYRCC 2 cut(s) 843, 2411
AccB7I CCANNNNNTGG 3 cut(s) 445, 920, 1539
AccBSI CCGCTC 1 cut(s) 451
AccI GTMKAC 2 cut(s) 954, 1372
AccII CGCG 2 cut(s) 325, 728
AccIII TCCGGA 1 cut(s) 1440
AciI CCGC 4 cut(s) 451, 728, 2193, 2636
AclWI GGATC 5 cut(s) 680, 1477, 1600, 2096, 3026
AcoI YGGCCR 1 cut(s) 3140
AcsI RAATTY 4 cut(s) 155, 2270, 2316, 3071
AcuI CTGAAG 4 cut(s) 2078, 2511, 3026, 3221
AcyI GRCGYC 2 cut(s) 844, 882
AfiI CCNNNNNNNGG 8 cut(s) 445, 584, 823, 920, 1525, 1539, 1615, 2768
AgeI ACCGGT 1 cut(s) 26
AhdI GACNNNNNGTC 1 cut(s) 793
AjiI CACGTC 2 cut(s) 1151, 1774
AjnI CCWGG 5 cut(s) 140, 536, 2113, 2230, 2934
AleI CACNNNNGTG 1 cut(s) 2924
AloI GAACNNNNNNTCC 2 cut(s) 894, 926
Alw21I GWGCWC 2 cut(s) 2495, 2716
Alw26I GTCTC 5 cut(s) 337, 728, 1454, 1988, 2172
AlwI GGATC 5 cut(s) 680, 1477, 1600, 2096, 3026
AlwNI CAGNNNCTG 3 cut(s) 365, 445, 2402
Aor13HI TCCGGA 1 cut(s) 1440
AoxI GGCC 5 cut(s) 937, 1649, 2092, 2228, 3140
ApeKI GCWGC 9 cut(s) 145, 175, 650, 1281, 1331, 1334, 1862, 1973, 2612
ApoI RAATTY 4 cut(s) 155, 2270, 2316, 3071
AseI ATTAAT 2 cut(s) 378, 507
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 2 cut(s) 1013, 2981
AspLEI GCGC 4 cut(s) 327, 655, 846, 1904
AspS9I GGNCC 2 cut(s) 1438, 2092
AsuHPI GGTGA 9 cut(s) 229, 524, 890, 1106, 1828, 2167, 2182, 2417, 2590
AsuII TTCGAA 2 cut(s) 864, 1790
AsuNHI GCTAGC 1 cut(s) 1976
AvaII GGWCC 1 cut(s) 1438
BalI TGGCCA 1 cut(s) 3142
BanI GGYRCC 2 cut(s) 843, 2411
BanII GRGCYC 2 cut(s) 2495, 2716
BbsI GAAGAC 2 cut(s) 2328, 2974
Bbv12I GWGCWC 2 cut(s) 2495, 2716
BbvI GCAGC 9 cut(s) 132, 162, 637, 1293, 1343, 1346, 1874, 1985, 2624
BcgI CGANNNNNNTGC 2 cut(s) 706, 740
BciT130I CCWGG 5 cut(s) 142, 538, 2115, 2232, 2936
BciVI GTATCC 1 cut(s) 2214
BclI TGATCA 4 cut(s) 394, 2505, 2622, 2694
BcoDI GTCTC 5 cut(s) 337, 728, 1454, 1988, 2172
BfmI CTRYAG 2 cut(s) 766, 1897
BfoI RGCGCY 2 cut(s) 847, 1905
BfuAI ACCTGC 1 cut(s) 2639
BfuI GTATCC 1 cut(s) 2214
BglII AGATCT 1 cut(s) 1674
Bme1390I CCNGG 5 cut(s) 142, 538, 2115, 2232, 2936
Bme18I GGWCC 1 cut(s) 1438
BmeRI GACNNNNNGTC 1 cut(s) 793
BmgBI CACGTC 2 cut(s) 1151, 1774
BmgT120I GGNCC 2 cut(s) 1438, 2092
BmiI GGNNCC 4 cut(s) 556, 845, 2413, 2810
BmrFI CCNGG 5 cut(s) 142, 538, 2115, 2232, 2936
BmrI ACTGGG 1 cut(s) 2090
BmsI GCATC 5 cut(s) 47, 481, 482, 1979, 2410
BmtI GCTAGC 1 cut(s) 1980
BmuI ACTGGG 1 cut(s) 2090
BpiI GAAGAC 2 cut(s) 2328, 2974
BpmI CTGGAG 5 cut(s) 467, 520, 800, 1929, 2271
Bpu14I TTCGAA 2 cut(s) 864, 1790
BpuEI CTTGAG 2 cut(s) 2805, 3050
Bsa29I ATCGAT 1 cut(s) 2511
BsaHI GRCGYC 2 cut(s) 844, 882
BsaI GGTCTC 1 cut(s) 1454
BsaJI CCNNGG 2 cut(s) 1248, 1464
BsaWI WCCGGW 4 cut(s) 26, 71, 1440, 2174
BsaXI ACNNNNNCTCC 8 cut(s) 518, 548, 894, 924, 1800, 1830, 2169, 2199
Bsc4I CCNNNNNNNGG 8 cut(s) 445, 584, 823, 920, 1525, 1539, 1615, 2768
Bse118I RCCGGY 2 cut(s) 26, 2425
Bse1I ACTGG 7 cut(s) 1125, 1639, 1856, 1912, 2085, 2407, 2765
Bse3DI GCAATG 5 cut(s) 528, 1440, 1887, 2372, 3021
BseAI TCCGGA 1 cut(s) 1440
BseBI CCWGG 5 cut(s) 142, 538, 2115, 2232, 2936
BseCI ATCGAT 1 cut(s) 2511
BseDI CCNNGG 2 cut(s) 1248, 1464
BseGI GGATG 5 cut(s) 371, 650, 1083, 1258, 1933
BseLI CCNNNNNNNGG 8 cut(s) 445, 584, 823, 920, 1525, 1539, 1615, 2768
BseMI GCAATG 5 cut(s) 528, 1440, 1887, 2372, 3021
BseMII CTCAG 5 cut(s) 402, 996, 1999, 2239, 2508
BseNI ACTGG 7 cut(s) 1125, 1639, 1856, 1912, 2085, 2407, 2765
BseRI GAGGAG 1 cut(s) 2039
BseXI GCAGC 9 cut(s) 132, 162, 637, 1293, 1343, 1346, 1874, 1985, 2624
BseYI CCCAGC 1 cut(s) 188
Bsh1236I CGCG 2 cut(s) 325, 728
BshFI GGCC 5 cut(s) 939, 1651, 2094, 2230, 3142
BshNI GGYRCC 2 cut(s) 843, 2411
BshTI ACCGGT 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 2511
BsiHKAI GWGCWC 2 cut(s) 2495, 2716
BsiSI CCGG 5 cut(s) 27, 72, 1441, 2175, 2426
BslFI GGGAC 4 cut(s) 1042, 2097, 2642, 3114
BslI CCNNNNNNNGG 8 cut(s) 445, 584, 823, 920, 1525, 1539, 1615, 2768
BsmAI GTCTC 5 cut(s) 337, 728, 1454, 1988, 2172
BsmFI GGGAC 4 cut(s) 1042, 2097, 2642, 3114
BsmI GAATGC 2 cut(s) 223, 1764
BsnI GGCC 5 cut(s) 939, 1651, 2094, 2230, 3142
Bso31I GGTCTC 1 cut(s) 1454
Bsp119I TTCGAA 2 cut(s) 864, 1790
Bsp1286I GDGCHC 2 cut(s) 2495, 2716
Bsp13I TCCGGA 1 cut(s) 1440
Bsp1407I TGTACA 4 cut(s) 1644, 1717, 1846, 2562
Bsp19I CCATGG 1 cut(s) 1464
BspACI CCGC 4 cut(s) 451, 728, 2193, 2636
BspANI GGCC 5 cut(s) 939, 1651, 2094, 2230, 3142
BspCNI CTCAG 5 cut(s) 403, 997, 1998, 2238, 2507
BspDI ATCGAT 1 cut(s) 2511
BspEI TCCGGA 1 cut(s) 1440
BspFNI CGCG 2 cut(s) 325, 728
BspLI GGNNCC 4 cut(s) 556, 845, 2413, 2810
BspMI ACCTGC 1 cut(s) 2639
BspOI GCTAGC 1 cut(s) 1980
BspPI GGATC 5 cut(s) 680, 1477, 1600, 2096, 3026
BspT104I TTCGAA 2 cut(s) 864, 1790
BspT107I GGYRCC 2 cut(s) 843, 2411
BspTNI GGTCTC 1 cut(s) 1454
BsrBI CCGCTC 1 cut(s) 451
BsrDI GCAATG 5 cut(s) 528, 1440, 1887, 2372, 3021
BsrFI RCCGGY 2 cut(s) 26, 2425
BsrGI TGTACA 4 cut(s) 1644, 1717, 1846, 2562
BsrI ACTGG 7 cut(s) 1125, 1639, 1856, 1912, 2085, 2407, 2765
BssAI RCCGGY 2 cut(s) 26, 2425
BssECI CCNNGG 2 cut(s) 1248, 1464
BssNI GRCGYC 2 cut(s) 844, 882
BssT1I CCWWGG 1 cut(s) 1464
Bst2UI CCWGG 5 cut(s) 142, 538, 2115, 2232, 2936
Bst4CI ACNGT 8 cut(s) 331, 710, 783, 1249, 2539, 2602, 2829, 2842
Bst6I CTCTTC 3 cut(s) 1406, 1748, 1814
BstACI GRCGYC 2 cut(s) 844, 882
BstAUI TGTACA 4 cut(s) 1644, 1717, 1846, 2562
BstBI TTCGAA 2 cut(s) 864, 1790
BstC8I GCNNGC 4 cut(s) 150, 1058, 1146, 1978
BstDEI CTNAG 5 cut(s) 411, 1005, 1985, 2225, 2494
BstDSI CCRYGG 2 cut(s) 1248, 1464
BstEII GGTNACC 1 cut(s) 1528
BstF5I GGATG 5 cut(s) 371, 650, 1083, 1258, 1933
BstFNI CGCG 2 cut(s) 325, 728
BstH2I RGCGCY 2 cut(s) 847, 1905
BstHHI GCGC 4 cut(s) 327, 655, 846, 1904
BstMAI GTCTC 5 cut(s) 337, 728, 1454, 1988, 2172
BstMWI GCNNNNNNNGC 6 cut(s) 109, 308, 448, 1113, 2531, 2645
BstNI CCWGG 5 cut(s) 142, 538, 2115, 2232, 2936
BstNSI RCATGY 4 cut(s) 130, 152, 1060, 2245
BstPI GGTNACC 1 cut(s) 1528
BstSCI CCNGG 5 cut(s) 140, 536, 2113, 2230, 2934
BstSFI CTRYAG 2 cut(s) 766, 1897
BstUI CGCG 2 cut(s) 325, 728
BstV1I GCAGC 9 cut(s) 132, 162, 637, 1293, 1343, 1346, 1874, 1985, 2624
BstV2I GAAGAC 2 cut(s) 2328, 2974
BstX2I RGATCY 3 cut(s) 1469, 1674, 2101
BstXI CCANNNNNNTGG 1 cut(s) 3150
BstYI RGATCY 3 cut(s) 1469, 1674, 2101
Bsu15I ATCGAT 1 cut(s) 2511
BsuI GTATCC 1 cut(s) 2214
BsuRI GGCC 5 cut(s) 939, 1651, 2094, 2230, 3142
BsuTUI ATCGAT 1 cut(s) 2511
BtgI CCRYGG 2 cut(s) 1248, 1464
BtrI CACGTC 2 cut(s) 1151, 1774
BtsCI GGATG 5 cut(s) 371, 650, 1083, 1258, 1933
BtsI GCAGTG 4 cut(s) 501, 2259, 2403, 3033
BveI ACCTGC 1 cut(s) 2639
Cac8I GCNNGC 4 cut(s) 150, 1058, 1146, 1978
CaiI CAGNNNCTG 3 cut(s) 365, 445, 2402
CfoI GCGC 4 cut(s) 327, 655, 846, 1904
Cfr10I RCCGGY 2 cut(s) 26, 2425
Cfr13I GGNCC 2 cut(s) 1438, 2092
ClaI ATCGAT 1 cut(s) 2511
CseI GACGC 1 cut(s) 527
CspAI ACCGGT 1 cut(s) 26
CspCI CAANNNNNGTGG 4 cut(s) 1332, 1367, 1894, 1929
DdeI CTNAG 5 cut(s) 411, 1005, 1985, 2225, 2494
DinI GGCGCC 1 cut(s) 845
DriI GACNNNNNGTC 1 cut(s) 793
EaeI YGGCCR 1 cut(s) 3140
Eam1104I CTCTTC 3 cut(s) 1406, 1748, 1814
Eam1105I GACNNNNNGTC 1 cut(s) 793
EarI CTCTTC 3 cut(s) 1406, 1748, 1814
Ecl136II GAGCTC 2 cut(s) 2493, 2714
Eco130I CCWWGG 1 cut(s) 1464
Eco147I AGGCCT 2 cut(s) 1651, 2230
Eco24I GRGCYC 2 cut(s) 2495, 2716
Eco31I GGTCTC 1 cut(s) 1454
Eco47I GGWCC 1 cut(s) 1438
Eco53kI GAGCTC 2 cut(s) 2493, 2714
Eco57I CTGAAG 4 cut(s) 2078, 2511, 3026, 3221
Eco91I GGTNACC 1 cut(s) 1528
EcoICRI GAGCTC 2 cut(s) 2493, 2714
EcoO65I GGTNACC 1 cut(s) 1528
EcoRII CCWGG 5 cut(s) 140, 536, 2113, 2230, 2934
EcoT14I CCWWGG 1 cut(s) 1464
EcoT22I ATGCAT 2 cut(s) 1994, 3119
EcoT38I GRGCYC 2 cut(s) 2495, 2716
EgeI GGCGCC 1 cut(s) 845
EheI GGCGCC 1 cut(s) 845
ErhI CCWWGG 1 cut(s) 1464
FalI AAGNNNNNCTT 2 cut(s) 2966, 2998
FaqI GGGAC 4 cut(s) 1042, 2097, 2642, 3114
FauI CCCGC 1 cut(s) 444
FbaI TGATCA 4 cut(s) 394, 2505, 2622, 2694
FblI GTMKAC 2 cut(s) 954, 1372
FokI GGATG 5 cut(s) 358, 657, 1090, 1265, 1940
FriOI GRGCYC 2 cut(s) 2495, 2716
GlaI GCGC 4 cut(s) 326, 654, 845, 1903
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 5 cut(s) 467, 520, 800, 1929, 2271
HaeII RGCGCY 2 cut(s) 847, 1905
HaeIII GGCC 5 cut(s) 939, 1651, 2094, 2230, 3142
HapII CCGG 5 cut(s) 27, 72, 1441, 2175, 2426
HgaI GACGC 1 cut(s) 527
HhaI GCGC 4 cut(s) 327, 655, 846, 1904
Hin1I GRCGYC 2 cut(s) 844, 882
Hin6I GCGC 4 cut(s) 325, 653, 844, 1902
HinP1I GCGC 4 cut(s) 325, 653, 844, 1902
HincII GTYRAC 1 cut(s) 2689
HindII GTYRAC 1 cut(s) 2689
HindIII AAGCTT 3 cut(s) 1569, 1779, 2351
HinfI GANTC 9 cut(s) 48, 356, 588, 959, 1009, 1387, 1553, 1661, 2464
HpaII CCGG 5 cut(s) 27, 72, 1441, 2175, 2426
HphI GGTGA 9 cut(s) 229, 524, 890, 1106, 1828, 2167, 2182, 2417, 2590
Hpy166II GTNNAC 9 cut(s) 7, 499, 955, 1373, 1645, 1849, 2158, 2563, 2689
Hpy188I TCNGA 9 cut(s) 1229, 1297, 1509, 1666, 1988, 2249, 2497, 2864, 3201
Hpy8I GTNNAC 9 cut(s) 7, 499, 955, 1373, 1645, 1849, 2158, 2563, 2689
Hpy99I CGWCG 1 cut(s) 1778
HpyCH4III ACNGT 8 cut(s) 331, 710, 783, 1249, 2539, 2602, 2829, 2842
HpyCH4IV ACGT 4 cut(s) 882, 1150, 1773, 2160
HpyF10VI GCNNNNNNNGC 6 cut(s) 109, 308, 448, 1113, 2531, 2645
HpyF3I CTNAG 5 cut(s) 411, 1005, 1985, 2225, 2494
HpySE526I ACGT 4 cut(s) 882, 1150, 1773, 2160
Hsp92I GRCGYC 2 cut(s) 844, 882
HspAI GCGC 4 cut(s) 325, 653, 844, 1902
KasI GGCGCC 1 cut(s) 843
Kpn2I TCCGGA 1 cut(s) 1440
Ksp22I TGATCA 4 cut(s) 394, 2505, 2622, 2694
LmnI GCTCC 5 cut(s) 448, 1859, 2026, 2249, 2711
Lsp1109I GCAGC 9 cut(s) 132, 162, 637, 1293, 1343, 1346, 1874, 1985, 2624
LweI GCATC 5 cut(s) 47, 481, 482, 1979, 2410
MaeII ACGT 4 cut(s) 882, 1150, 1773, 2160
MaeIII GTNAC 9 cut(s) 878, 1000, 1063, 1339, 1384, 1528, 1892, 2398, 3028
MbiI CCGCTC 1 cut(s) 451
MfeI CAATTG 3 cut(s) 1344, 3033, 3144
MflI RGATCY 3 cut(s) 1469, 1674, 2101
MhlI GDGCHC 2 cut(s) 2495, 2716
MlsI TGGCCA 1 cut(s) 3142
MluNI TGGCCA 1 cut(s) 3142
Mly113I GGCGCC 1 cut(s) 844
MlyI GAGTC 1 cut(s) 1381
MmeI TCCRAC 4 cut(s) 602, 680, 1712, 2617
Mox20I TGGCCA 1 cut(s) 3142
Mph1103I ATGCAT 2 cut(s) 1994, 3119
MroI TCCGGA 1 cut(s) 1440
MroXI GAANNNNTTC 2 cut(s) 1013, 2981
MscI TGGCCA 1 cut(s) 3142
MseI TTAA 6 cut(s) 378, 507, 1785, 1917, 2097, 2663
MslI CAYNNNNRTG 2 cut(s) 2924, 3026
Msp20I TGGCCA 1 cut(s) 3142
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 5 cut(s) 27, 72, 1441, 2175, 2426
MspR9I CCNGG 5 cut(s) 142, 538, 2115, 2232, 2936
MunI CAATTG 3 cut(s) 1344, 3033, 3144
Mva1269I GAATGC 2 cut(s) 223, 1764
MvaI CCWGG 5 cut(s) 142, 538, 2115, 2232, 2936
MvnI CGCG 2 cut(s) 325, 728
MwoI GCNNNNNNNGC 6 cut(s) 109, 308, 448, 1113, 2531, 2645
NarI GGCGCC 1 cut(s) 844
NcoI CCATGG 1 cut(s) 1464
NheI GCTAGC 1 cut(s) 1976
NlaIV GGNNCC 4 cut(s) 556, 845, 2413, 2810
NmuCI GTSAC 6 cut(s) 878, 1000, 1063, 1384, 2398, 3028
NsiI ATGCAT 2 cut(s) 1994, 3119
NspI RCATGY 4 cut(s) 130, 152, 1060, 2245
NspV TTCGAA 2 cut(s) 864, 1790
OliI CACNNNNGTG 1 cut(s) 2924
PaeI GCATGC 2 cut(s) 152, 1060
PceI AGGCCT 2 cut(s) 1651, 2230
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PctI GAATGC 2 cut(s) 223, 1764
PdmI GAANNNNTTC 2 cut(s) 1013, 2981
PfeI GAWTC 8 cut(s) 48, 356, 588, 959, 1009, 1553, 1661, 2464
PflMI CCANNNNNTGG 3 cut(s) 445, 920, 1539
PinAI ACCGGT 1 cut(s) 26
PleI GAGTC 1 cut(s) 1381
PluTI GGCGCC 1 cut(s) 847
PpsI GAGTC 1 cut(s) 1381
PshBI ATTAAT 2 cut(s) 378, 507
Psp124BI GAGCTC 2 cut(s) 2495, 2716
Psp6I CCWGG 5 cut(s) 140, 536, 2113, 2230, 2934
PspEI GGTNACC 1 cut(s) 1528
PspFI CCCAGC 1 cut(s) 188
PspGI CCWGG 5 cut(s) 140, 536, 2113, 2230, 2934
PspN4I GGNNCC 4 cut(s) 556, 845, 2413, 2810
PspPI GGNCC 2 cut(s) 1438, 2092
PstNI CAGNNNCTG 3 cut(s) 365, 445, 2402
PsuI RGATCY 3 cut(s) 1469, 1674, 2101
PvuII CAGCTG 1 cut(s) 917
RseI CAYNNNNRTG 2 cut(s) 2924, 3026
SacI GAGCTC 2 cut(s) 2495, 2716
SaqAI TTAA 6 cut(s) 378, 507, 1785, 1917, 2097, 2663
Sau96I GGNCC 2 cut(s) 1438, 2092
SchI GAGTC 1 cut(s) 1381
ScrFI CCNGG 5 cut(s) 142, 538, 2115, 2232, 2936
SduI GDGCHC 2 cut(s) 2495, 2716
SfaNI GCATC 5 cut(s) 47, 481, 482, 1979, 2410
SfcI CTRYAG 2 cut(s) 766, 1897
SfoI GGCGCC 1 cut(s) 845
SfuI TTCGAA 2 cut(s) 864, 1790
SinI GGWCC 1 cut(s) 1438
SmiMI CAYNNNNRTG 2 cut(s) 2924, 3026
SmlI CTYRAG 2 cut(s) 2820, 3065
SmoI CTYRAG 2 cut(s) 2820, 3065
SphI GCATGC 2 cut(s) 152, 1060
SseBI AGGCCT 2 cut(s) 1651, 2230
SsiI CCGC 4 cut(s) 451, 728, 2193, 2636
SspDI GGCGCC 1 cut(s) 843
SspI AATATT 1 cut(s) 861
SstI GAGCTC 2 cut(s) 2495, 2716
StuI AGGCCT 2 cut(s) 1651, 2230
StyD4I CCNGG 5 cut(s) 140, 536, 2113, 2230, 2934
StyI CCWWGG 1 cut(s) 1464
TaaI ACNGT 8 cut(s) 331, 710, 783, 1249, 2539, 2602, 2829, 2842
TaiI ACGT 4 cut(s) 885, 1153, 1776, 2163
TaqI TCGA 9 cut(s) 46, 797, 864, 1172, 1727, 1776, 1790, 2268, 2511
TatI WGTACW 5 cut(s) 1272, 1644, 1717, 1846, 2562
TauI GCSGC 1 cut(s) 2639
TfiI GAWTC 8 cut(s) 48, 356, 588, 959, 1009, 1553, 1661, 2464
Tru1I TTAA 6 cut(s) 378, 507, 1785, 1917, 2097, 2663
Tru9I TTAA 6 cut(s) 378, 507, 1785, 1917, 2097, 2663
TseFI GTSAC 6 cut(s) 878, 1000, 1063, 1384, 2398, 3028
TseI GCWGC 9 cut(s) 145, 175, 650, 1281, 1331, 1334, 1862, 1973, 2612
Tsp45I GTSAC 6 cut(s) 878, 1000, 1063, 1384, 2398, 3028
TspGWI ACGGA 2 cut(s) 516, 2331
Van91I CCANNNNNTGG 3 cut(s) 445, 920, 1539
VpaK11BI GGWCC 1 cut(s) 1438
VspI ATTAAT 2 cut(s) 378, 507
XapI RAATTY 4 cut(s) 155, 2270, 2316, 3071
XbaI TCTAGA 3 cut(s) 251, 931, 1153
XceI RCATGY 4 cut(s) 130, 152, 1060, 2245
XcmI CCANNNNNNNNNTGG 1 cut(s) 1540
XmiI GTMKAC 2 cut(s) 954, 1372
XmnI GAANNNNTTC 2 cut(s) 1013, 2981
ZraI GACGTC 1 cut(s) 883
Zsp2I ATGCAT 2 cut(s) 1994, 3119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.