Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

34465956 .. 34466931

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATGGGTAGTTTGGGTGCATTGCTTGCTTTCATCACCCGTGATGATATTGATTTCTTTGCTCGCCTGGAGATGTATATGAGGCAAGAACATCCCCCCTTGTGTGGAAGAGATCACATGGCTTACAGATCAGCTTATTTTCCAGTTAAGGATGTTATTAATGGTGATCTATTTGAGCAGTATCTAACATTGCCCATGGATCTACAGAGGAAAATTGCAGATGAGTTGGACAGAATTTATAATCTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

83

Amino Acids

9.79

Weight (kDa)

4.8

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF_A	PF03178	2 - 62	1.2e-17	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwI	GGATC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	234
AseI	ATTAAT	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	28, 176
BciT130I	CCWGG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	2 cut(s)	20, 188
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	91, 157
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMI	GCAATG	2 cut(s)	20, 188
BseNI	ACTGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	112, 128, 166, 199
Bsp19I	CCATGG	1 cut(s)	195
BspPI	GGATC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	20, 188
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	112, 128, 166, 199
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	27, 64
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	91, 157
BstKTI	GATC	4 cut(s)	115, 131, 169, 202
BstMBI	GATC	4 cut(s)	112, 128, 166, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	91, 157
Cac8I	GCNNGC	2 cut(s)	27, 64
CviAII	CATG	2 cut(s)	118, 196
CviJI	RGCY	2 cut(s)	122, 134
CviKI_1	RGCY	2 cut(s)	122, 134
DpnI	GATC	4 cut(s)	114, 130, 168, 201
DpnII	GATC	4 cut(s)	112, 128, 166, 199
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	121, 199
FaiI	YATR	5 cut(s)	78, 80, 119, 197, 240
FatI	CATG	2 cut(s)	117, 195
FokI	GGATG	2 cut(s)	78, 164
GsuI	CTGGAG	1 cut(s)	89
Hin1II	CATG	2 cut(s)	121, 199
HphI	GGTGA	2 cut(s)	28, 176
Hpy188III	TCNNGA	1 cut(s)	245
HpyCH4V	TGCA	2 cut(s)	20, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	121, 199
Kzo9I	GATC	4 cut(s)	112, 128, 166, 199
LpnPI	CCDG	4 cut(s)	53, 80, 156, 230
MalI	GATC	4 cut(s)	114, 130, 168, 201
MboI	GATC	4 cut(s)	112, 128, 166, 199
MboII	GAAGA	1 cut(s)	120
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	213, 234
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	75, 201
MseI	TTAA	2 cut(s)	147, 159
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	26
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	112, 128, 166, 199
NlaIII	CATG	2 cut(s)	121, 199
PshBI	ATTAAT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	147, 159
Sau3AI	GATC	4 cut(s)	112, 128, 166, 199
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	213, 234
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	195
TasI	AATT	2 cut(s)	213, 234
Tru1I	TTAA	2 cut(s)	147, 159
Tru9I	TTAA	2 cut(s)	147, 159
TspDTI	ATGAA	1 cut(s)	22
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.