RchiOBHm_Chr4g0388261

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
3431079 .. 3434964
3886 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36149

Sequence Viewer

Length: 2964 bp
ATGACTGAAACGACCAGTGCCATTGTGCCCGCATATTTGGGGTATCTAGTTGTCCCTCTTACCATACACAGAAGGAGATGGCGTTCGGCGTTTGTCACCATTTACTGCTCTAGAGCCTTCCAGTCATTCTTCCAGTCAGTGTCAGTGTCAGACAACAAGGTAGCATCAGCCCTCAAAACTGATGCAGCGCATGGAGTTTGCGGTGACCCTGACGATGTTGCACAGCGACTTGAAGCATTTGGTTCGAATACATACGAGATAGCAGCAGCCAAGAGGTTCCTCCATTTTGTGTGGGAAGCATGCCAAGACCTCACAATTTTTATTCTTATAGGCTGTGCTGCACTTTCACTTGCTTTGGGCATCCTAGAGCATGGATTAAGAGAAGGTTGGAGTGATGGTGGAAGCATATTTCTCGCAGTCATTCTGGTGATTTCAGTGTCTGCCATAAGCAATTACAGGCAGCAAAGAGAGTTTGACAAATTGTCAAAAGTCGGTAGCAATCACCAAATTGAAGCTGTGAGAAATGGCGAGAGAGTGCAGATTTCAATATTCAAAATTGTGGTTGGAGATGTCATTTGCTTAAAGATTGGAGATCAAGTTCCTGCCGATGGGTTGCTCTTGAAGGGATATTCATTGGAAGTAGATGAATCAAGCATGACAGGGGAGAGTGACCATGTCGAAATCAACCAAAGCCAGAACCCCTTCTTGTTTTCTGGCACCAAAGTGGTTAACGGGCATGCTCAGATGCTTGTCACTTCCGTCGGCATGAACACAACATGGGGCGAAATGATGAGCCAAATCAGCAGTGATACAAGTGAACAGACACCTTTACAAGCTCGCATCCGGGGACTAGCCTCATCAATAGGTATAGTTGGTTTGCTAGTAGCTTTGTCAAATCTCATAGTCTCAAAGATACACTACTTCACCGGAAAAACCAAGGACAAACGTGGCAAAAAGGAGTTCAATGGGAGCAGAACCAAAGTTAATCACATAATAATGGCCGTCATTGGGATGGTAGGAACTGCAGTTACAATTGTTGTGGCTGCAATTCCAGAAGGTTTACCAGTTGCCATGACGATTACTCTCTGTTATGCTATGAAGAGAATGATGGCTGATAAAGCAATGGTTAGGAAACTCTCTTCTTGTGAGATTATGGGCTCTGCTACCACCATTTGCACTGATAAAACAGGAACTCTCACGATGAACCAGATGAAGGTGGCCAAGTTCTGGATAGGTGAAAAGCCCGTGGAAGAAGTCTACTCATCAATTTCGTCCCGTCTTCTAATTAGCTTGATTCAAGAAGGGGTTGCTATGAACACAACCGGTTCTAGGCACATTTCAGGATCTGGATTTGTATTTTCAGGCAGTCCTACTGAAAAAGCCATTCTTTCATGGGCATCTTTGGACCTGCATATGGACATGGAGGAATTGAAAAACAATTCTATCATTCAAGATGTTGAAGCCTTCAATTCACACAAGAAAAGAAGTGGTATTTTGATCAAGAGGAAGACAGACAACACAATGCAAGTACATTGGAAAGGAGCTGCGGAGGTGATACTAGCAATGTGCAACAGTTACCACAATGCCTCTGGACATATAAAAGATATGGATGACGATGCAAAGGAAAAACTTGAGCATATTATTCAAGGTATGGCAGCTAGTAGCCTCCGATGCATTGCATTTGCACACAAAGAAGTATCTGCAGAGGAGCAAGTGGATCCAGAACATCATAAGACTTTGCTAAAAGACAATGGCTTGACCCTATTAGGACTTGTGGGTCTTAAAGATCCATGTCGGCCAGGAGTGAAGAAAGCTGTCGAGGACTGTCAACATGCCGGGGTAAACATCAAAATGATCACAGGGGACAACATTTTTACTGCAAAATCGATAGCCACAGAATGTGGGATACTCAAGCCTGAGGAGGACAAGACCAATGATGCTGTGATAGAGGGTGTGCAATTTCGGAACTACACACCAGAAGAGAGAATGCAGAAAGTAGACAATATCCGTGTCATGGCAAGGTCATCCCCTTCTGATAAGCTTCTTATGGTGCAATGCTTGAAGCAGAAAGGTCATGTAGTTGCAGTGACTGGTGATGGCACAAATGATGCTCCTGCATTGAAAGAAGCTGACATAGGTCTCTCTATGGGGATGCAAGGCACTGAAGTTGCGAAAGATAGCTCAGACATTGTGATCATGGATGACGATTTTGCTTCAGTGGCCACAGTTTTGATGTGGGGAAGATGTGTGTACAATAACATCCAAAAGTTCATTCAATTCCAACTCACTGTCAATGTTGCAGCTCTTGTGATCAACTTTGTGGCAGCAGTTTCAGCAAGTAAGGTGCCCTTAACAGCAGTTCAATTATTGTGGGTGAACTTGATTATGGACACACTCGGTGCTCTGGCCCTTGCGACAGACAAACCTACAAAAGAACTCATGGAGAATCCACCTGTGAGAAGAACGGAGCCTCTCATCACCAACATCATGTGGAGGAACCTTTTACCTCAAGCTCTGTACCAGATAGCAGTAGTATTGACCTTACGATTCAGGGGCAACACAATCTTTGGTGTAGATGATAAGGTACAAGATACCTTGATCTTTAACACGTTTGCTCTCTGCCAGGTCTTCAATGAATTCAACGCAAGAAAGCTTGAGAAGAAGAATGTTTTCAAGGGACTGCTCACCAACAAAATCTTTTTGGGGATCATTGCATTAATAATTATTCTGCAGCTTGTGATGGTGGAACTTCTGAACAAATACGCAGATACAGAGAGGTTGAATTGGGAGCAATGGGGTGCATGTCTTGGAATTGCGGCCATCTCTTGGCCACTCGGTTGGGTTGTTAAGTATGATCACCACAGCAGCCTCAGCAATGAGGATGCACATAGGCAATCCTTACCCAAAGGAACTATCTGGAATTCTTCCCCACAAGAGGAGACAACTCGTGCACTGTCTCAATAG

Protein Analysis

987

Amino Acids

108.48

Weight (kDa)

6.79

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 52 - 116 1.5e-09 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 170 - 267 2.2e-22 P-type ATPase actuator domain
Hydrolase PF00702 390 - 711 3.2e-14 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 429 - 600 5.3e-28 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 782 - 951 5e-48 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1776
Acc36I ACCTGC 1 cut(s) 1416
AccB1I GGYRCC 2 cut(s) 716, 2344
AccB7I CCANNNNNTGG 2 cut(s) 1227, 2826
AccI GTMKAC 2 cut(s) 1257, 1998
AciI CCGC 4 cut(s) 30, 201, 1547, 2816
AclWI GGATC 5 cut(s) 1351, 1712, 1725, 1781, 2714
AcoI YGGCCR 6 cut(s) 999, 1218, 1796, 2220, 2817, 2828
AcsI RAATTY 2 cut(s) 2636, 2920
AcuI CTGAAG 2 cut(s) 2184, 2199
AdeI CACNNNGTG 1 cut(s) 2399
AfaI GTAC 4 cut(s) 1530, 2252, 2519, 2586
AfiI CCNNNNNNNGG 9 cut(s) 608, 1008, 1213, 1227, 1329, 1414, 2014, 2826, 2935
AflIII ACRYGT 1 cut(s) 2607
AgeI ACCGGT 1 cut(s) 1322
AhdI GACNNNNNGTC 1 cut(s) 481
AjnI CCWGG 2 cut(s) 1798, 2622
AjuI GAANNNNNNNTTGG 2 cut(s) 2256, 2288
AleI CACNNNNGTG 1 cut(s) 722
AloI GAACNNNNNNTCC 4 cut(s) 67, 99, 582, 614
Alw21I GWGCWC 2 cut(s) 2404, 2953
Alw26I GTCTC 3 cut(s) 910, 2144, 2933
Alw44I GTGCAC 1 cut(s) 2949
AlwI GGATC 5 cut(s) 1351, 1712, 1725, 1781, 2714
AlwNI CAGNNNCTG 3 cut(s) 440, 1346, 2090
AoxI GGCC 7 cut(s) 999, 1218, 1796, 2220, 2406, 2817, 2828
ApaLI GTGCAC 1 cut(s) 2949
ApoI RAATTY 2 cut(s) 2636, 2920
AseI ATTAAT 1 cut(s) 2717
AsiGI ACCGGT 1 cut(s) 1322
Asp700I GAANNNNTTC 2 cut(s) 701, 2669
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 2 cut(s) 1405, 2407
AsuC2I CCSGG 2 cut(s) 845, 1837
AsuII TTCGAA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 1405
AxyI CCTNAGG 1 cut(s) 1917
BaeGI GKGCMC 3 cut(s) 30, 2349, 2953
BalI TGGCCA 3 cut(s) 1220, 2222, 2830
BamHI GGATCC 1 cut(s) 1717
BanI GGYRCC 2 cut(s) 716, 2344
BanII GRGCYC 1 cut(s) 1160
BauI CACGAG 1 cut(s) 2946
BbsI GAAGAC 3 cut(s) 1271, 1514, 2620
Bbv12I GWGCWC 2 cut(s) 2404, 2953
BbvCI CCTCAGC 1 cut(s) 2870
BccI CCATC 8 cut(s) 72, 389, 602, 1006, 1102, 2090, 2734, 2828
BceAI ACGGC 1 cut(s) 986
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 394, 428
BciT130I CCWGG 2 cut(s) 1800, 2624
BciVI GTATCC 1 cut(s) 1899
BclI TGATCA 5 cut(s) 1497, 1854, 2193, 2310, 2854
BcnI CCSGG 2 cut(s) 845, 1837
BcoDI GTCTC 3 cut(s) 910, 2144, 2933
BfaI CTAG 8 cut(s) 47, 111, 365, 851, 881, 1329, 1559, 1659
BfmI CTRYAG 3 cut(s) 1023, 1701, 2729
BfuAI ACCTGC 1 cut(s) 1416
BfuI GTATCC 1 cut(s) 1899
Bme1390I CCNGG 4 cut(s) 845, 1800, 1837, 2624
Bme18I GGWCC 1 cut(s) 1405
BmeRI GACNNNNNGTC 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 1405, 2407
BmiI GGNNCC 6 cut(s) 278, 718, 1719, 2346, 2469, 2498
BmrFI CCNGG 4 cut(s) 845, 1800, 1837, 2624
BoxI GACNNNNGTC 1 cut(s) 2136
BpiI GAAGAC 3 cut(s) 1271, 1514, 2620
Bpu10I CCTNAGC 1 cut(s) 2870
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 4 cut(s) 1652, 1895, 2493, 2675
BpuMI CCSGG 2 cut(s) 845, 1837
Bsa29I ATCGAT 1 cut(s) 1886
BsaI GGTCTC 1 cut(s) 2144
BsaJI CCNNGG 4 cut(s) 844, 936, 1245, 1836
BsaWI WCCGGW 2 cut(s) 926, 1322
BsaXI ACNNNNNCTCC 6 cut(s) 67, 97, 382, 412, 582, 612
Bsc4I CCNNNNNNNGG 9 cut(s) 608, 1008, 1213, 1227, 1329, 1414, 2014, 2826, 2935
Bse118I RCCGGY 1 cut(s) 1322
Bse1I ACTGG 5 cut(s) 15, 121, 133, 1064, 2095
Bse21I CCTNAGG 1 cut(s) 1917
Bse3DI GCAATG 7 cut(s) 1128, 1569, 1674, 2060, 2709, 2798, 2881
BseBI CCWGG 2 cut(s) 1800, 2624
BseCI ATCGAT 1 cut(s) 1886
BseDI CCNNGG 4 cut(s) 844, 936, 1245, 1836
BseGI GGATG 9 cut(s) 360, 840, 1017, 1615, 2024, 2157, 2206, 2259, 2887
BseLI CCNNNNNNNGG 9 cut(s) 608, 1008, 1213, 1227, 1329, 1414, 2014, 2826, 2935
BseMI GCAATG 7 cut(s) 1128, 1569, 1674, 2060, 2709, 2798, 2881
BseMII CTCAG 4 cut(s) 755, 1908, 2196, 2884
BseNI ACTGG 5 cut(s) 15, 121, 133, 1064, 2095
BseRI GAGGAG 3 cut(s) 1721, 1934, 2951
BseSI GKGCMC 3 cut(s) 30, 2349, 2953
BsgI GTGCAG 2 cut(s) 324, 557
BshFI GGCC 7 cut(s) 1001, 1220, 1798, 2222, 2408, 2819, 2830
BshNI GGYRCC 2 cut(s) 716, 2344
BshTI ACCGGT 1 cut(s) 1322
BshVI ATCGAT 1 cut(s) 1886
BsiHKAI GWGCWC 2 cut(s) 2404, 2953
BsiSI CCGG 4 cut(s) 844, 927, 1323, 1836
BslFI GGGAC 5 cut(s) 38, 861, 1258, 1877, 2691
BslI CCNNNNNNNGG 9 cut(s) 608, 1008, 1213, 1227, 1329, 1414, 2014, 2826, 2935
BsmAI GTCTC 3 cut(s) 910, 2144, 2933
BsmFI GGGAC 5 cut(s) 38, 861, 1258, 1877, 2691
BsmI GAATGC 1 cut(s) 1992
BsnI GGCC 7 cut(s) 1001, 1220, 1798, 2222, 2408, 2819, 2830
Bso31I GGTCTC 1 cut(s) 2144
Bsp119I TTCGAA 1 cut(s) 245
Bsp1286I GDGCHC 5 cut(s) 30, 1160, 2349, 2404, 2953
Bsp1407I TGTACA 1 cut(s) 2250
BspACI CCGC 4 cut(s) 30, 201, 1547, 2816
BspANI GGCC 7 cut(s) 1001, 1220, 1798, 2222, 2408, 2819, 2830
BspCNI CTCAG 4 cut(s) 754, 1909, 2195, 2883
BspDI ATCGAT 1 cut(s) 1886
BspLI GGNNCC 6 cut(s) 278, 718, 1719, 2346, 2469, 2498
BspMAI CTGCAG 3 cut(s) 1027, 1705, 2733
BspMI ACCTGC 1 cut(s) 1416
BspPI GGATC 5 cut(s) 1351, 1712, 1725, 1781, 2714
BspT104I TTCGAA 1 cut(s) 245
BspT107I GGYRCC 2 cut(s) 716, 2344
BspTNI GGTCTC 1 cut(s) 2144
BsrDI GCAATG 7 cut(s) 1128, 1569, 1674, 2060, 2709, 2798, 2881
BsrFI RCCGGY 1 cut(s) 1322
BsrGI TGTACA 1 cut(s) 2250
BsrI ACTGG 5 cut(s) 15, 121, 133, 1064, 2095
BssAI RCCGGY 1 cut(s) 1322
BssECI CCNNGG 4 cut(s) 844, 936, 1245, 1836
BssSI CACGAG 1 cut(s) 2946
BssT1I CCWWGG 1 cut(s) 936
Bst2BI CACGAG 1 cut(s) 2946
Bst2UI CCWGG 2 cut(s) 1800, 2624
Bst4CI ACNGT 5 cut(s) 1574, 1826, 2227, 2290, 2955
Bst6I CTCTTC 3 cut(s) 1094, 1144, 1974
BstAUI TGTACA 1 cut(s) 2250
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 4 cut(s) 30, 301, 738, 838
BstDEI CTNAG 4 cut(s) 741, 1917, 2182, 2870
BstDSI CCRYGG 1 cut(s) 1245
BstEII GGTNACC 1 cut(s) 203
BstF5I GGATG 9 cut(s) 360, 840, 1017, 1615, 2024, 2157, 2206, 2259, 2887
BstHHI GCGC 1 cut(s) 190
BstMAI GTCTC 3 cut(s) 910, 2144, 2933
BstMWI GCNNNNNNNGC 6 cut(s) 801, 1118, 1671, 2219, 2333, 2871
BstNI CCWGG 2 cut(s) 1800, 2624
BstNSI RCATGY 4 cut(s) 303, 740, 1835, 2805
BstPAI GACNNNNGTC 1 cut(s) 2136
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 4 cut(s) 843, 1798, 1835, 2622
BstSFI CTRYAG 3 cut(s) 1023, 1701, 2729
BstSLI GKGCMC 3 cut(s) 30, 2349, 2953
BstV2I GAAGAC 3 cut(s) 1271, 1514, 2620
BstX2I RGATCY 3 cut(s) 1343, 1717, 1786
BstXI CCANNNNNNTGG 1 cut(s) 2838
BstYI RGATCY 3 cut(s) 1343, 1717, 1786
Bsu15I ATCGAT 1 cut(s) 1886
Bsu36I CCTNAGG 1 cut(s) 1917
BsuI GTATCC 1 cut(s) 1899
BsuRI GGCC 7 cut(s) 1001, 1220, 1798, 2222, 2408, 2819, 2830
BsuTUI ATCGAT 1 cut(s) 1886
BtgI CCRYGG 1 cut(s) 1245
BtsCI GGATG 9 cut(s) 360, 840, 1017, 1615, 2024, 2157, 2206, 2259, 2887
BtsI GCAGTG 2 cut(s) 811, 2091
BveI ACCTGC 1 cut(s) 1416
Cac8I GCNNGC 4 cut(s) 30, 301, 738, 838
CaiI CAGNNNCTG 3 cut(s) 440, 1346, 2090
CfoI GCGC 1 cut(s) 190
Cfr10I RCCGGY 1 cut(s) 1322
Cfr13I GGNCC 2 cut(s) 1405, 2407
ClaI ATCGAT 1 cut(s) 1886
Csp6I GTAC 4 cut(s) 1529, 2251, 2518, 2585
CspAI ACCGGT 1 cut(s) 1322
CspCI CAANNNNNGTGG 4 cut(s) 1020, 1055, 2351, 2386
CviQI GTAC 4 cut(s) 1529, 2251, 2518, 2585
DdeI CTNAG 4 cut(s) 741, 1917, 2182, 2870
DraIII CACNNNGTG 1 cut(s) 2399
DrdI GACNNNNNNGTC 1 cut(s) 1776
DriI GACNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 1776
EaeI YGGCCR 6 cut(s) 999, 1218, 1796, 2220, 2817, 2828
Eam1104I CTCTTC 3 cut(s) 1094, 1144, 1974
Eam1105I GACNNNNNGTC 1 cut(s) 481
EarI CTCTTC 3 cut(s) 1094, 1144, 1974
Eco130I CCWWGG 1 cut(s) 936
Eco24I GRGCYC 1 cut(s) 1160
Eco31I GGTCTC 1 cut(s) 2144
Eco47I GGWCC 1 cut(s) 1405
Eco57I CTGAAG 2 cut(s) 2184, 2199
Eco81I CCTNAGG 1 cut(s) 1917
Eco91I GGTNACC 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 203
EcoRI GAATTC 2 cut(s) 2636, 2920
EcoRII CCWGG 2 cut(s) 1798, 2622
EcoT14I CCWWGG 1 cut(s) 936
EcoT22I ATGCAT 1 cut(s) 1676
EcoT38I GRGCYC 1 cut(s) 1160
ErhI CCWWGG 1 cut(s) 936
FalI AAGNNNNNCTT 4 cut(s) 1371, 1403, 2333, 2365
FaqI GGGAC 5 cut(s) 38, 861, 1258, 1877, 2691
FauI CCCGC 1 cut(s) 37
FauNDI CATATG 1 cut(s) 1413
FbaI TGATCA 5 cut(s) 1497, 1854, 2193, 2310, 2854
FblI GTMKAC 2 cut(s) 1257, 1998
FokI GGATG 9 cut(s) 347, 827, 1024, 1622, 2011, 2164, 2213, 2246, 2894
FriOI GRGCYC 1 cut(s) 1160
FspBI CTAG 8 cut(s) 47, 111, 365, 851, 881, 1329, 1559, 1659
GlaI GCGC 1 cut(s) 189
HaeIII GGCC 7 cut(s) 1001, 1220, 1798, 2222, 2408, 2819, 2830
HapII CCGG 4 cut(s) 844, 927, 1323, 1836
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 2 cut(s) 730, 1829
HindII GTYRAC 2 cut(s) 730, 1829
HindIII AAGCTT 2 cut(s) 2039, 2651
HinfI GANTC 4 cut(s) 647, 1294, 2446, 2547
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 4 cut(s) 844, 927, 1323, 1836
Hpy188I TCNGA 7 cut(s) 151, 744, 1670, 1965, 2035, 2185, 2754
Hpy99I CGWCG 1 cut(s) 764
HpyCH4III ACNGT 5 cut(s) 1574, 1826, 2227, 2290, 2955
HpyCH4IV ACGT 2 cut(s) 946, 2609
HpyF10VI GCNNNNNNNGC 6 cut(s) 801, 1118, 1671, 2219, 2333, 2871
HpyF3I CTNAG 4 cut(s) 741, 1917, 2182, 2870
HpySE526I ACGT 2 cut(s) 946, 2609
HspAI GCGC 1 cut(s) 188
Ksp22I TGATCA 5 cut(s) 1497, 1854, 2193, 2310, 2854
KspAI GTTAAC 1 cut(s) 730
LmnI GCTCC 6 cut(s) 969, 1541, 1708, 2116, 2467, 2788
MaeI CTAG 8 cut(s) 47, 111, 365, 851, 881, 1329, 1559, 1659
MaeII ACGT 2 cut(s) 946, 2609
MaeIII GTNAC 7 cut(s) 94, 203, 668, 751, 1027, 1574, 2086
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 3 cut(s) 1343, 1717, 1786
MhlI GDGCHC 5 cut(s) 30, 1160, 2349, 2404, 2953
MlsI TGGCCA 3 cut(s) 1220, 2222, 2830
MluNI TGGCCA 3 cut(s) 1220, 2222, 2830
MmeI TCCRAC 3 cut(s) 368, 544, 2305
Mox20I TGGCCA 3 cut(s) 1220, 2222, 2830
Mph1103I ATGCAT 1 cut(s) 1676
MroXI GAANNNNTTC 2 cut(s) 701, 2669
MscI TGGCCA 3 cut(s) 1220, 2222, 2830
MseI TTAA 9 cut(s) 377, 581, 729, 984, 1782, 2351, 2604, 2717, 2847
MslI CAYNNNNRTG 5 cut(s) 425, 722, 995, 1010, 1850
Msp20I TGGCCA 3 cut(s) 1220, 2222, 2830
MspI CCGG 4 cut(s) 844, 927, 1323, 1836
MspR9I CCNGG 4 cut(s) 845, 1800, 1837, 2624
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 1 cut(s) 1992
MvaI CCWGG 2 cut(s) 1800, 2624
MwoI GCNNNNNNNGC 6 cut(s) 801, 1118, 1671, 2219, 2333, 2871
NciI CCSGG 2 cut(s) 845, 1837
NdeI CATATG 1 cut(s) 1413
NlaIV GGNNCC 6 cut(s) 278, 718, 1719, 2346, 2469, 2498
NmuCI GTSAC 5 cut(s) 94, 203, 668, 751, 2086
NsiI ATGCAT 1 cut(s) 1676
NspI RCATGY 4 cut(s) 303, 740, 1835, 2805
NspV TTCGAA 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 722
PaeI GCATGC 2 cut(s) 303, 740
PctI GAATGC 1 cut(s) 1992
PdmI GAANNNNTTC 2 cut(s) 701, 2669
PfeI GAWTC 4 cut(s) 647, 1294, 2446, 2547
PflFI GACNNNGTC 1 cut(s) 674
PflMI CCANNNNNTGG 2 cut(s) 1227, 2826
PinAI ACCGGT 1 cut(s) 1322
PshAI GACNNNNGTC 1 cut(s) 2136
PshBI ATTAAT 1 cut(s) 2717
Psp6I CCWGG 2 cut(s) 1798, 2622
PspEI GGTNACC 1 cut(s) 203
PspGI CCWGG 2 cut(s) 1798, 2622
PspN4I GGNNCC 6 cut(s) 278, 718, 1719, 2346, 2469, 2498
PspPI GGNCC 2 cut(s) 1405, 2407
PsrI GAACNNNNNNTAC 2 cut(s) 1012, 1044
PstI CTGCAG 3 cut(s) 1027, 1705, 2733
PstNI CAGNNNCTG 3 cut(s) 440, 1346, 2090
PsuI RGATCY 3 cut(s) 1343, 1717, 1786
PsyI GACNNNGTC 1 cut(s) 674
RsaI GTAC 4 cut(s) 1530, 2252, 2519, 2586
RsaNI GTAC 4 cut(s) 1529, 2251, 2518, 2585
RseI CAYNNNNRTG 5 cut(s) 425, 722, 995, 1010, 1850
SaqAI TTAA 9 cut(s) 377, 581, 729, 984, 1782, 2351, 2604, 2717, 2847
Sau96I GGNCC 2 cut(s) 1405, 2407
ScrFI CCNGG 4 cut(s) 845, 1800, 1837, 2624
SduI GDGCHC 5 cut(s) 30, 1160, 2349, 2404, 2953
SfcI CTRYAG 3 cut(s) 1023, 1701, 2729
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 1405
SmiMI CAYNNNNRTG 5 cut(s) 425, 722, 995, 1010, 1850
SmlI CTYRAG 4 cut(s) 1631, 1910, 2508, 2654
SmoI CTYRAG 4 cut(s) 1631, 1910, 2508, 2654
SphI GCATGC 2 cut(s) 303, 740
SsiI CCGC 4 cut(s) 30, 201, 1547, 2816
SspI AATATT 1 cut(s) 549
SspMI CTAG 8 cut(s) 47, 111, 365, 851, 881, 1329, 1559, 1659
StyD4I CCNGG 4 cut(s) 843, 1798, 1835, 2622
StyI CCWWGG 1 cut(s) 936
TaaI ACNGT 5 cut(s) 1574, 1826, 2227, 2290, 2955
TaiI ACGT 2 cut(s) 949, 2612
TaqI TCGA 4 cut(s) 245, 678, 1818, 1886
TatI WGTACW 2 cut(s) 1528, 2250
TauI GCSGC 1 cut(s) 2819
TfiI GAWTC 4 cut(s) 647, 1294, 2446, 2547
Tru1I TTAA 9 cut(s) 377, 581, 729, 984, 1782, 2351, 2604, 2717, 2847
Tru9I TTAA 9 cut(s) 377, 581, 729, 984, 1782, 2351, 2604, 2717, 2847
TseFI GTSAC 5 cut(s) 94, 203, 668, 751, 2086
Tsp45I GTSAC 5 cut(s) 94, 203, 668, 751, 2086
TspGWI ACGGA 3 cut(s) 748, 1997, 2480
Tth111I GACNNNGTC 1 cut(s) 674
Van91I CCANNNNNTGG 2 cut(s) 1227, 2826
VneI GTGCAC 1 cut(s) 2949
VpaK11BI GGWCC 1 cut(s) 1405
VspI ATTAAT 1 cut(s) 2717
XapI RAATTY 2 cut(s) 2636, 2920
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 4 cut(s) 303, 740, 1835, 2805
XcmI CCANNNNNNNNNTGG 1 cut(s) 1586
XmiI GTMKAC 2 cut(s) 1257, 1998
XmnI GAANNNNTTC 2 cut(s) 701, 2669
XspI CTAG 8 cut(s) 47, 111, 365, 851, 881, 1329, 1559, 1659
Zsp2I ATGCAT 1 cut(s) 1676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.