Rw4G001650

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
3102450 .. 3105554
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001650.1

Sequence Viewer

Length: 3105 bp
ATGTCCAAAGTTACCAGCCTGCATGCAAAATTTGGGAGCATTGAGTTGCTGCTTGATGTTCCCAGCAGTGGTCCAGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCCTCACCATATACTGCTCTAGAGCCTTCCTGTCTTTACCACCTTCTTCTCAACCCAAAGGCACCAAAGCCACAAGAGCCACATTCTTATCGCGCACAGTCTCATACTCCATTGTTAGTGTTGAATCAGTTTCAGTGCCCGCCATTAATGGCTTCAAAGTTGATCAAAAAAGCCTCACTAAGCTAGTGAAGAAGAAAAATCTCAACCAGCTTCTGGAGCTGGGAGGGGTTGAAGAAGTGGCGTCAGTTCTCAAAACTGATGCAGTGCACGGAATTAATGGTGATGATGCTGACGACATTGCCTCCAGGCACGAAGCATTTGGTTCCAACACATACAAGAAACCTCCAACGCAAGGATTCCTCCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAATCCTAATCCTCTTGGGTTGTGCGGTGCTTTCTCTTGGATTCGGCATCAAAGAGCATGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTCGCGGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGTTGTCCAAAGTCAGCAACAATCTCCAAATTGAGGCTGTGAGAAATGGAAGGCGCCAACTCATTTCAATTTTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGATCAAGTTCCAGCTGATGGATTACTTCTAGAAGGCCACTCTTTATCAGTAGACGAATCAAGCATGACAGGAGAGAGCGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATAGCTGATGGTTATGGTCGAATGCTTGTCACATCAGTCGGGATGAACACGAATTGGGGTGAAATGATGAGCCAAATTAGCCAAGACACCAGTGAAAAGACACCCCTGCAAGCACGTCTAGACAAGCTAACTTCTTCGATAGGTAAGGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCAGATACTTCACAGGGAACACCGAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACCAAATCTGATGACATAATAAACGCTGTCATTGGGATTGTAGCAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCATATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACTGACAAAACAGGCACTCTGACCATGAACCAGATGAAGGTAACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCGTATGTTCTCAACTTGATCCAAGAAGGGGTTTCTCTCAACACAACTGGCAGTGTGTACAGGCCTAGCTTGGATTCCGAAATTGAGATCTCTGGCAGTCCCACTGAAAAGGCTATTCTTTCATGGGTAGTACATGGGTTGAAGATAAATATGGAGGAAGTGGTGAAGAGCTGTAGCATTCTCCACGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAGGCAGACAACTCAATCCATGTACACAGGAAAGGAGCAGCAGAAATGATACTAGCAATGTGTACAAGTTACTATGATGCCTCTGGAATTGTTAAGGACATGGATTACAATGAAAAAATGAACTTTGAGCAGATTATTCAAGGTATGGCAGCCAGCAGCCTCAGATGCATTGCGTTCGCACATAAAGAAGTTCCAGCAGAGGAGCAAGTTGAAGGAGACCAGAAAGTTGTGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGTCGTCCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCCAAAGCCATAGCCACTGAGTGTGGGATACTCAAGCCTGGTCAGGCCATGCTTGGAGCAGTAATAGAAGGTGTCGAATTTCGCAACTACACGGCAGAAGAGAGAATGGAGAAAGTTGAGAAAATTTCCGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACGGGTGATGGCACCAATGATGCACCGGCATTAAAAGAAGCTGATATAGGACTTTCTATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCGGCAGTTTCAGCAGGTCAAGTTCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAACCCACAAGAGAACTGATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTGTACCAGATAACAGTTCTCTTGATCTTACAATTCAGGGGCAAAGCAATCTTTGGTGTCAGTGATAAGGTAAAGGACACATTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCAAGGAAGCTTGAGAAGAAGAATGTGTTCAAGGGAATACATACCAATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAATTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATCTCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCAGAGAAACCCATTTTCAGCTATCTGAAGACGAAGAAAAATAAGCACCCCAGATGA

Protein Analysis

1034

Amino Acids

112.98

Weight (kDa)

8.35

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 109 - 178 1e-13 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 234 - 329 1.1e-20 P-type ATPase actuator domain
Hydrolase PF00702 452 - 773 1.1e-13 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 492 - 663 1.2e-27 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 844 - 1013 4.3e-48 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2513
AccB1I GGYRCC 3 cut(s) 167, 717, 2285
AccB7I CCANNNNNTGG 2 cut(s) 319, 794
AccI GTMKAC 2 cut(s) 828, 1246
AccII CGCG 2 cut(s) 199, 602
AccIII TCCGGA 1 cut(s) 1314
AciI CCGC 5 cut(s) 246, 524, 602, 2067, 2510
AclWI GGATC 4 cut(s) 1351, 1474, 1970, 2900
AcoI YGGCCR 1 cut(s) 3014
AcsI RAATTY 5 cut(s) 29, 2144, 2190, 2933, 2945
AcuI CTGAAG 3 cut(s) 2385, 2900, 3095
AcyI GRCGYC 2 cut(s) 347, 718
AdeI CACNNNGTG 1 cut(s) 2088
AfaI GTAC 8 cut(s) 1148, 1363, 1520, 1593, 1722, 1762, 2438, 2705
AfiI CCNNNNNNNGG 8 cut(s) 68, 319, 458, 697, 794, 1399, 1489, 2642
AhdI GACNNNNNGTC 1 cut(s) 667
AjiI CACGTC 2 cut(s) 1025, 1648
AjnI CCWGG 5 cut(s) 73, 410, 1987, 2104, 2808
AjuI GAANNNNNNNTTGG 2 cut(s) 2867, 2899
AleI CACNNNNGTG 1 cut(s) 2798
AloI GAACNNNNNNTCC 2 cut(s) 768, 800
Alw21I GWGCWC 3 cut(s) 375, 2369, 2590
Alw26I GTCTC 5 cut(s) 211, 602, 1328, 1908, 2046
Alw44I GTGCAC 1 cut(s) 371
AlwI GGATC 4 cut(s) 1351, 1474, 1970, 2900
AlwNI CAGNNNCTG 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 1314
AoxI GGCC 5 cut(s) 811, 1523, 1966, 2112, 3014
ApaLI GTGCAC 1 cut(s) 371
ApeKI GCWGC 8 cut(s) 49, 1155, 1205, 1208, 1736, 1847, 1854, 2486
ApoI RAATTY 5 cut(s) 29, 2144, 2190, 2933, 2945
AseI ATTAAT 2 cut(s) 252, 381
Asp700I GAANNNNTTC 2 cut(s) 887, 2855
AspLEI GCGC 3 cut(s) 201, 720, 2656
AspS9I GGNCC 3 cut(s) 71, 1312, 1966
AsuII TTCGAA 2 cut(s) 738, 1664
AvaII GGWCC 2 cut(s) 71, 1312
BaeGI GKGCMC 2 cut(s) 246, 375
BalI TGGCCA 1 cut(s) 3016
BanI GGYRCC 3 cut(s) 167, 717, 2285
BanII GRGCYC 2 cut(s) 2369, 2590
BbsI GAAGAC 2 cut(s) 2202, 3083
Bbv12I GWGCWC 3 cut(s) 375, 2369, 2590
BbvI GCAGC 8 cut(s) 36, 1167, 1217, 1220, 1748, 1859, 1866, 2498
BccI CCATC 8 cut(s) 788, 911, 1288, 1934, 2194, 2276, 2620, 2920
BceAI ACGGC 1 cut(s) 2175
BcgI CGANNNNNNTGC 4 cut(s) 580, 614, 1855, 1889
BciT130I CCWGG 5 cut(s) 75, 412, 1989, 2106, 2810
BciVI GTATCC 1 cut(s) 2088
BclI TGATCA 4 cut(s) 268, 2379, 2496, 2568
BcoDI GTCTC 5 cut(s) 211, 602, 1328, 1908, 2046
BfaI CTAG 7 cut(s) 126, 290, 806, 1028, 1527, 1751, 3029
BfmI CTRYAG 2 cut(s) 640, 1633
BfoI RGCGCY 2 cut(s) 721, 2657
BfuAI ACCTGC 1 cut(s) 2513
BfuI GTATCC 1 cut(s) 2088
BglII AGATCT 1 cut(s) 1548
BisI GCNGC 9 cut(s) 50, 1156, 1206, 1209, 1737, 1848, 1855, 2487, 2511
BlsI GCNGC 9 cut(s) 51, 1157, 1207, 1210, 1738, 1849, 1856, 2488, 2512
Bme1390I CCNGG 5 cut(s) 75, 412, 1989, 2106, 2810
Bme18I GGWCC 2 cut(s) 71, 1312
BmeRI GACNNNNNGTC 1 cut(s) 667
BmgBI CACGTC 2 cut(s) 1025, 1648
BmgT120I GGNCC 3 cut(s) 71, 1312, 1966
BmiI GGNNCC 5 cut(s) 169, 430, 719, 2287, 2684
BmrFI CCNGG 5 cut(s) 75, 412, 1989, 2106, 2810
BmsI GCATC 6 cut(s) 355, 382, 555, 1765, 1853, 2284
BpiI GAAGAC 2 cut(s) 2202, 3083
BpmI CTGGAG 2 cut(s) 341, 394
Bpu14I TTCGAA 2 cut(s) 738, 1664
BpuEI CTTGAG 4 cut(s) 2084, 2679, 2861, 2924
BsaHI GRCGYC 2 cut(s) 347, 718
BsaI GGTCTC 2 cut(s) 1328, 1908
BsaJI CCNNGG 2 cut(s) 1122, 1338
BsaWI WCCGGW 2 cut(s) 1314, 2048
BsaXI ACNNNNNCTCC 8 cut(s) 392, 422, 768, 798, 1674, 1704, 2043, 2073
Bsc4I CCNNNNNNNGG 8 cut(s) 68, 319, 458, 697, 794, 1399, 1489, 2642
Bse118I RCCGGY 1 cut(s) 2299
Bse1I ACTGG 3 cut(s) 999, 1513, 2639
Bse3DI GCAATG 6 cut(s) 402, 1314, 1761, 1866, 2246, 2895
BseAI TCCGGA 1 cut(s) 1314
BseBI CCWGG 5 cut(s) 75, 412, 1989, 2106, 2810
BseDI CCNNGG 2 cut(s) 1122, 1338
BseGI GGATG 3 cut(s) 957, 1132, 2392
BseLI CCNNNNNNNGG 8 cut(s) 68, 319, 458, 697, 794, 1399, 1489, 2642
BseMI GCAATG 6 cut(s) 402, 1314, 1761, 1866, 2246, 2895
BseMII CTCAG 4 cut(s) 870, 1873, 2076, 2382
BseNI ACTGG 3 cut(s) 999, 1513, 2639
BseRI GAGGAG 1 cut(s) 1913
BseSI GKGCMC 2 cut(s) 246, 375
BseXI GCAGC 8 cut(s) 36, 1167, 1217, 1220, 1748, 1859, 1866, 2498
BseYI CCCAGC 2 cut(s) 62, 325
Bsh1236I CGCG 2 cut(s) 199, 602
BshFI GGCC 5 cut(s) 813, 1525, 1968, 2114, 3016
BshNI GGYRCC 3 cut(s) 167, 717, 2285
BsiHKAI GWGCWC 3 cut(s) 375, 2369, 2590
BsiSI CCGG 3 cut(s) 1315, 2049, 2300
BslFI GGGAC 4 cut(s) 916, 1545, 1971, 2988
BslI CCNNNNNNNGG 8 cut(s) 68, 319, 458, 697, 794, 1399, 1489, 2642
BsmAI GTCTC 5 cut(s) 211, 602, 1328, 1908, 2046
BsmFI GGGAC 4 cut(s) 916, 1545, 1971, 2988
BsmI GAATGC 3 cut(s) 97, 936, 1638
BsnI GGCC 5 cut(s) 813, 1525, 1968, 2114, 3016
Bso31I GGTCTC 2 cut(s) 1328, 1908
Bsp119I TTCGAA 2 cut(s) 738, 1664
Bsp1286I GDGCHC 4 cut(s) 246, 375, 2369, 2590
Bsp13I TCCGGA 1 cut(s) 1314
Bsp1407I TGTACA 4 cut(s) 1518, 1720, 1760, 2436
Bsp19I CCATGG 1 cut(s) 1338
BspACI CCGC 5 cut(s) 246, 524, 602, 2067, 2510
BspANI GGCC 5 cut(s) 813, 1525, 1968, 2114, 3016
BspCNI CTCAG 4 cut(s) 871, 1872, 2077, 2381
BspEI TCCGGA 1 cut(s) 1314
BspFNI CGCG 2 cut(s) 199, 602
BspLI GGNNCC 5 cut(s) 169, 430, 719, 2287, 2684
BspMI ACCTGC 1 cut(s) 2513
BspPI GGATC 4 cut(s) 1351, 1474, 1970, 2900
BspQI GCTCTTC 1 cut(s) 1622
BspT104I TTCGAA 2 cut(s) 738, 1664
BspT107I GGYRCC 3 cut(s) 167, 717, 2285
BspTNI GGTCTC 2 cut(s) 1328, 1908
BsrDI GCAATG 6 cut(s) 402, 1314, 1761, 1866, 2246, 2895
BsrFI RCCGGY 1 cut(s) 2299
BsrGI TGTACA 4 cut(s) 1518, 1720, 1760, 2436
BsrI ACTGG 3 cut(s) 999, 1513, 2639
BssAI RCCGGY 1 cut(s) 2299
BssECI CCNNGG 2 cut(s) 1122, 1338
BssNI GRCGYC 2 cut(s) 347, 718
BssT1I CCWWGG 1 cut(s) 1338
Bst2UI CCWGG 5 cut(s) 75, 412, 1989, 2106, 2810
Bst4CI ACNGT 7 cut(s) 205, 584, 657, 2413, 2476, 2703, 2716
Bst6I CTCTTC 4 cut(s) 1280, 1622, 1688, 2160
BstACI GRCGYC 2 cut(s) 347, 718
BstAUI TGTACA 4 cut(s) 1518, 1720, 1760, 2436
BstBI TTCGAA 2 cut(s) 738, 1664
BstC8I GCNNGC 5 cut(s) 20, 24, 246, 1020, 1852
BstDEI CTNAG 6 cut(s) 285, 879, 1407, 1859, 2085, 2368
BstDSI CCRYGG 1 cut(s) 1338
BstF5I GGATG 3 cut(s) 957, 1132, 2392
BstFNI CGCG 2 cut(s) 199, 602
BstH2I RGCGCY 2 cut(s) 721, 2657
BstHHI GCGC 3 cut(s) 201, 720, 2656
BstMAI GTCTC 5 cut(s) 211, 602, 1328, 1908, 2046
BstMWI GCNNNNNNNGC 6 cut(s) 182, 322, 987, 1863, 2405, 2519
BstNI CCWGG 5 cut(s) 75, 412, 1989, 2106, 2810
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 5 cut(s) 73, 410, 1987, 2104, 2808
BstSFI CTRYAG 2 cut(s) 640, 1633
BstSLI GKGCMC 2 cut(s) 246, 375
BstUI CGCG 2 cut(s) 199, 602
BstV1I GCAGC 8 cut(s) 36, 1167, 1217, 1220, 1748, 1859, 1866, 2498
BstV2I GAAGAC 2 cut(s) 2202, 3083
BstX2I RGATCY 3 cut(s) 1343, 1548, 1975
BstXI CCANNNNNNTGG 1 cut(s) 3024
BstYI RGATCY 3 cut(s) 1343, 1548, 1975
BsuI GTATCC 1 cut(s) 2088
BsuRI GGCC 5 cut(s) 813, 1525, 1968, 2114, 3016
BtgI CCRYGG 1 cut(s) 1338
BtrI CACGTC 2 cut(s) 1025, 1648
BtsCI GGATG 3 cut(s) 957, 1132, 2392
BtsI GCAGTG 5 cut(s) 73, 375, 1519, 2277, 2907
BveI ACCTGC 1 cut(s) 2513
Cac8I GCNNGC 5 cut(s) 20, 24, 246, 1020, 1852
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 3 cut(s) 201, 720, 2656
Cfr10I RCCGGY 1 cut(s) 2299
Cfr13I GGNCC 3 cut(s) 71, 1312, 1966
CseI GACGC 1 cut(s) 336
Csp6I GTAC 8 cut(s) 1147, 1362, 1519, 1592, 1721, 1761, 2437, 2704
CspCI CAANNNNNGTGG 2 cut(s) 1206, 1241
CviQI GTAC 8 cut(s) 1147, 1362, 1519, 1592, 1721, 1761, 2437, 2704
DdeI CTNAG 6 cut(s) 285, 879, 1407, 1859, 2085, 2368
DinI GGCGCC 1 cut(s) 719
DraIII CACNNNGTG 1 cut(s) 2088
DriI GACNNNNNGTC 1 cut(s) 667
EaeI YGGCCR 1 cut(s) 3014
Eam1104I CTCTTC 4 cut(s) 1280, 1622, 1688, 2160
Eam1105I GACNNNNNGTC 1 cut(s) 667
EarI CTCTTC 4 cut(s) 1280, 1622, 1688, 2160
Ecl136II GAGCTC 2 cut(s) 2367, 2588
Eco130I CCWWGG 1 cut(s) 1338
Eco147I AGGCCT 1 cut(s) 1525
Eco24I GRGCYC 2 cut(s) 2369, 2590
Eco31I GGTCTC 2 cut(s) 1328, 1908
Eco47I GGWCC 2 cut(s) 71, 1312
Eco53kI GAGCTC 2 cut(s) 2367, 2588
Eco57I CTGAAG 3 cut(s) 2385, 2900, 3095
EcoICRI GAGCTC 2 cut(s) 2367, 2588
EcoRII CCWGG 5 cut(s) 73, 410, 1987, 2104, 2808
EcoT14I CCWWGG 1 cut(s) 1338
EcoT22I ATGCAT 2 cut(s) 1868, 2993
EcoT38I GRGCYC 2 cut(s) 2369, 2590
EgeI GGCGCC 1 cut(s) 719
EheI GGCGCC 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 1338
FaqI GGGAC 4 cut(s) 916, 1545, 1971, 2988
FauI CCCGC 1 cut(s) 253
FbaI TGATCA 4 cut(s) 268, 2379, 2496, 2568
FblI GTMKAC 2 cut(s) 828, 1246
Fnu4HI GCNGC 9 cut(s) 50, 1156, 1206, 1209, 1737, 1848, 1855, 2487, 2511
FokI GGATG 3 cut(s) 964, 1139, 2399
FriOI GRGCYC 2 cut(s) 2369, 2590
Fsp4HI GCNGC 9 cut(s) 50, 1156, 1206, 1209, 1737, 1848, 1855, 2487, 2511
FspBI CTAG 7 cut(s) 126, 290, 806, 1028, 1527, 1751, 3029
GlaI GCGC 3 cut(s) 200, 719, 2655
GluI GCNGC 9 cut(s) 50, 1156, 1206, 1209, 1737, 1848, 1855, 2487, 2511
GsaI CCCAGC 2 cut(s) 66, 329
GsuI CTGGAG 2 cut(s) 341, 394
HaeII RGCGCY 2 cut(s) 721, 2657
HaeIII GGCC 5 cut(s) 813, 1525, 1968, 2114, 3016
HapII CCGG 3 cut(s) 1315, 2049, 2300
HgaI GACGC 1 cut(s) 336
HhaI GCGC 3 cut(s) 201, 720, 2656
Hin1I GRCGYC 2 cut(s) 347, 718
Hin6I GCGC 3 cut(s) 199, 718, 2654
HinP1I GCGC 3 cut(s) 199, 718, 2654
HincII GTYRAC 1 cut(s) 2563
HindII GTYRAC 1 cut(s) 2563
HindIII AAGCTT 3 cut(s) 1443, 2225, 2837
HinfI GANTC 9 cut(s) 230, 462, 540, 833, 883, 1261, 1427, 1535, 2338
HpaII CCGG 3 cut(s) 1315, 2049, 2300
Hpy166II GTNNAC 9 cut(s) 373, 829, 1247, 1519, 1723, 1761, 2032, 2437, 2563
Hpy188I TCNGA 7 cut(s) 1103, 1171, 1383, 1540, 1862, 2371, 3075
Hpy8I GTNNAC 9 cut(s) 373, 829, 1247, 1519, 1723, 1761, 2032, 2437, 2563
Hpy99I CGWCG 1 cut(s) 1652
HpyCH4III ACNGT 7 cut(s) 205, 584, 657, 2413, 2476, 2703, 2716
HpyCH4IV ACGT 3 cut(s) 1024, 1647, 2034
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 322, 987, 1863, 2405, 2519
HpyF3I CTNAG 6 cut(s) 285, 879, 1407, 1859, 2085, 2368
HpySE526I ACGT 3 cut(s) 1024, 1647, 2034
Hsp92I GRCGYC 2 cut(s) 347, 718
HspAI GCGC 3 cut(s) 199, 718, 2654
KasI GGCGCC 1 cut(s) 717
Kpn2I TCCGGA 1 cut(s) 1314
Ksp22I TGATCA 4 cut(s) 268, 2379, 2496, 2568
LguI GCTCTTC 1 cut(s) 1622
LmnI GCTCC 6 cut(s) 36, 322, 1733, 1900, 2123, 2585
Lsp1109I GCAGC 8 cut(s) 36, 1167, 1217, 1220, 1748, 1859, 1866, 2498
LweI GCATC 6 cut(s) 355, 382, 555, 1765, 1853, 2284
MaeI CTAG 7 cut(s) 126, 290, 806, 1028, 1527, 1751, 3029
MaeII ACGT 3 cut(s) 1024, 1647, 2034
MaeIII GTNAC 9 cut(s) 10, 874, 937, 1213, 1258, 1402, 1766, 2272, 2902
MfeI CAATTG 3 cut(s) 1218, 2907, 3018
MflI RGATCY 3 cut(s) 1343, 1548, 1975
MhlI GDGCHC 4 cut(s) 246, 375, 2369, 2590
MlsI TGGCCA 1 cut(s) 3016
MluNI TGGCCA 1 cut(s) 3016
Mly113I GGCGCC 1 cut(s) 718
MlyI GAGTC 1 cut(s) 1255
MmeI TCCRAC 4 cut(s) 456, 476, 554, 2491
Mox20I TGGCCA 1 cut(s) 3016
Mph1103I ATGCAT 2 cut(s) 1868, 2993
MroI TCCGGA 1 cut(s) 1314
MroXI GAANNNNTTC 2 cut(s) 887, 2855
MscI TGGCCA 1 cut(s) 3016
MseI TTAA 7 cut(s) 252, 381, 1659, 1791, 1971, 2306, 2537
MslI CAYNNNNRTG 2 cut(s) 2798, 2900
Msp20I TGGCCA 1 cut(s) 3016
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 3 cut(s) 1315, 2049, 2300
MspR9I CCNGG 5 cut(s) 75, 412, 1989, 2106, 2810
MunI CAATTG 3 cut(s) 1218, 2907, 3018
Mva1269I GAATGC 3 cut(s) 97, 936, 1638
MvaI CCWGG 5 cut(s) 75, 412, 1989, 2106, 2810
MvnI CGCG 2 cut(s) 199, 602
MwoI GCNNNNNNNGC 6 cut(s) 182, 322, 987, 1863, 2405, 2519
NarI GGCGCC 1 cut(s) 718
NcoI CCATGG 1 cut(s) 1338
NlaIV GGNNCC 5 cut(s) 169, 430, 719, 2287, 2684
NmuCI GTSAC 5 cut(s) 874, 937, 1258, 2272, 2902
NsiI ATGCAT 2 cut(s) 1868, 2993
NspI RCATGY 1 cut(s) 26
NspV TTCGAA 2 cut(s) 738, 1664
OliI CACNNNNGTG 1 cut(s) 2798
PaeI GCATGC 1 cut(s) 26
PceI AGGCCT 1 cut(s) 1525
PciSI GCTCTTC 1 cut(s) 1622
PctI GAATGC 3 cut(s) 97, 936, 1638
PdmI GAANNNNTTC 2 cut(s) 887, 2855
PfeI GAWTC 8 cut(s) 230, 462, 540, 833, 883, 1427, 1535, 2338
PflMI CCANNNNNTGG 2 cut(s) 319, 794
PkrI GCNGC 9 cut(s) 51, 1157, 1207, 1210, 1738, 1849, 1856, 2488, 2512
PleI GAGTC 1 cut(s) 1255
PluTI GGCGCC 1 cut(s) 721
PpsI GAGTC 1 cut(s) 1255
PshBI ATTAAT 2 cut(s) 252, 381
Psp124BI GAGCTC 2 cut(s) 2369, 2590
Psp6I CCWGG 5 cut(s) 73, 410, 1987, 2104, 2808
PspFI CCCAGC 2 cut(s) 62, 325
PspGI CCWGG 5 cut(s) 73, 410, 1987, 2104, 2808
PspN4I GGNNCC 5 cut(s) 169, 430, 719, 2287, 2684
PspPI GGNCC 3 cut(s) 71, 1312, 1966
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 3 cut(s) 1343, 1548, 1975
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 8 cut(s) 1148, 1363, 1520, 1593, 1722, 1762, 2438, 2705
RsaNI GTAC 8 cut(s) 1147, 1362, 1519, 1592, 1721, 1761, 2437, 2704
RseI CAYNNNNRTG 2 cut(s) 2798, 2900
SacI GAGCTC 2 cut(s) 2369, 2590
SapI GCTCTTC 1 cut(s) 1622
SaqAI TTAA 7 cut(s) 252, 381, 1659, 1791, 1971, 2306, 2537
SatI GCNGC 9 cut(s) 50, 1156, 1206, 1209, 1737, 1848, 1855, 2487, 2511
Sau96I GGNCC 3 cut(s) 71, 1312, 1966
SchI GAGTC 1 cut(s) 1255
ScrFI CCNGG 5 cut(s) 75, 412, 1989, 2106, 2810
SduI GDGCHC 4 cut(s) 246, 375, 2369, 2590
SfaNI GCATC 6 cut(s) 355, 382, 555, 1765, 1853, 2284
SfcI CTRYAG 2 cut(s) 640, 1633
SfoI GGCGCC 1 cut(s) 719
SfuI TTCGAA 2 cut(s) 738, 1664
SinI GGWCC 2 cut(s) 71, 1312
SmiMI CAYNNNNRTG 2 cut(s) 2798, 2900
SmlI CTYRAG 4 cut(s) 2099, 2694, 2840, 2939
SmoI CTYRAG 4 cut(s) 2099, 2694, 2840, 2939
SphI GCATGC 1 cut(s) 26
SseBI AGGCCT 1 cut(s) 1525
SsiI CCGC 5 cut(s) 246, 524, 602, 2067, 2510
SspDI GGCGCC 1 cut(s) 717
SspMI CTAG 7 cut(s) 126, 290, 806, 1028, 1527, 1751, 3029
SstI GAGCTC 2 cut(s) 2369, 2590
StuI AGGCCT 1 cut(s) 1525
StyD4I CCNGG 5 cut(s) 73, 410, 1987, 2104, 2808
StyI CCWWGG 1 cut(s) 1338
TaaI ACNGT 7 cut(s) 205, 584, 657, 2413, 2476, 2703, 2716
TaiI ACGT 3 cut(s) 1027, 1650, 2037
TaqI TCGA 6 cut(s) 738, 928, 1046, 1650, 1664, 2142
TatI WGTACW 7 cut(s) 1146, 1361, 1518, 1591, 1720, 1760, 2436
TauI GCSGC 1 cut(s) 2513
TfiI GAWTC 8 cut(s) 230, 462, 540, 833, 883, 1427, 1535, 2338
Tru1I TTAA 7 cut(s) 252, 381, 1659, 1791, 1971, 2306, 2537
Tru9I TTAA 7 cut(s) 252, 381, 1659, 1791, 1971, 2306, 2537
TseFI GTSAC 5 cut(s) 874, 937, 1258, 2272, 2902
TseI GCWGC 8 cut(s) 49, 1155, 1205, 1208, 1736, 1847, 1854, 2486
Tsp45I GTSAC 5 cut(s) 874, 937, 1258, 2272, 2902
TspGWI ACGGA 4 cut(s) 390, 1452, 2185, 2205
Van91I CCANNNNNTGG 2 cut(s) 319, 794
VneI GTGCAC 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 71, 1312
VspI ATTAAT 2 cut(s) 252, 381
XapI RAATTY 5 cut(s) 29, 2144, 2190, 2933, 2945
XbaI TCTAGA 3 cut(s) 125, 805, 1027
XceI RCATGY 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 828, 1246
XmnI GAANNNNTTC 2 cut(s) 887, 2855
XspI CTAG 7 cut(s) 126, 290, 806, 1028, 1527, 1751, 3029
Zsp2I ATGCAT 2 cut(s) 1868, 2993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.