Rh4CG023700

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
4548108 .. 4549025
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG023700.1

Sequence Viewer

Length: 918 bp
ATGAGGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGACAAAACAGGTACCCTGACCATGAACCAGATGAAGGTAACCAAGTTTTGGTTGGGGAAAGAATATGTGGAAGAAGAAGCTTATTCAGCTATTTCTCCTTACGTTCTCAACTTGATCCAAGAAGGAGTTTCTCTCAACACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCTGAAATTGAGATCTCTGGCAGTCCAACGGAAAAAGCTATTCTTTCATGGGCTGTACTTGGGTCGAAAATGGATTTGGAGAAAGTGGTGAAGAGTTGTAGCGTTCTCCATGTTGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTATGGTGAAGAGAAAGGCAGATAACTCGATCCATGTACACTGGAAAGGAGCAGCAGAGATGATACTAGCAATGTGCACAAATTACTACACTGCGTCTGGACTTGTTAAGGATATGGATGAGAATGACAAAAGGAAGTTTGAGCATATTATTCAAGGTTTGGCAGCTAGCAGCCTCAGATGCATAGCATTTGCACATAACCAAGTTCCAGCAGTGGAGCAACTAAATGCAGGCCAGAAAGTTTTGCTTACGGAAGATGGATTAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAACGTCAAAATGATAACCGGAGACAATGTTTTCACCGCAAAAGCCATAGCCACTGAATGTGGGATACTCAGGCCTGGTCAGGACATGCTTGGAGCAGTCATAGAAGCTATCGAATTCCGCAACTACACGCCAGAAGAGAGATCGGAGAAAATTGAGAAAATTTCAGTCATTGCAAGATCTTCTCCGTTTGATAAGCTTCTAATGGTGTAG

Protein Analysis

305

Amino Acids

33.62

Weight (kDa)

6.96

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 65 - 207 4.4e-20 P-type ATPase, cytoplasmic domain N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 33
AciI CCGC 2 cut(s) 744, 826
AclWI GGATC 3 cut(s) 70, 193, 427
AcsI RAATTY 2 cut(s) 821, 867
AfaI GTAC 5 cut(s) 82, 97, 239, 312, 441
AfiI CCNNNNNNNGG 2 cut(s) 118, 132
AgsI TTSAA 3 cut(s) 371, 557, 686
AjnI CCWGG 1 cut(s) 781
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 8 cut(s) 40, 164, 173, 249, 293, 569, 815, 904
AluI AGCT 8 cut(s) 40, 164, 173, 249, 293, 569, 815, 904
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 47, 723
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 3 cut(s) 70, 193, 427
Aor13HI TCCGGA 1 cut(s) 33
AoxI GGCC 3 cut(s) 242, 634, 779
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 3 cut(s) 455, 566, 573
ApoI RAATTY 2 cut(s) 821, 867
Asp718I GGTACC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 4 cut(s) 355, 421, 718, 733
AsuII TTCGAA 1 cut(s) 383
AsuNHI GCTAGC 1 cut(s) 569
AvaII GGWCC 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 467, 578, 585
BccI CCATC 2 cut(s) 7, 653
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 765
BcoDI GTCTC 2 cut(s) 47, 723
BfaI CTAG 3 cut(s) 246, 470, 570
BfuI GTATCC 1 cut(s) 765
BglII AGATCT 2 cut(s) 267, 884
BisI GCNGC 3 cut(s) 456, 567, 574
BlsI GCNGC 3 cut(s) 457, 568, 575
Bme1390I CCNGG 1 cut(s) 783
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 783
BmsI GCATC 1 cut(s) 572
BmtI GCTAGC 1 cut(s) 573
BplI GAGNNNNNCTC 2 cut(s) 201, 233
Bpu14I TTCGAA 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 2 cut(s) 33, 725
BsaXI ACNNNNNCTCC 4 cut(s) 393, 423, 720, 750
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 132
Bse1I ACTGG 2 cut(s) 232, 449
Bse3DI GCAATG 3 cut(s) 33, 480, 876
BseAI TCCGGA 1 cut(s) 33
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 2 cut(s) 118, 132
BseMI GCAATG 3 cut(s) 33, 480, 876
BseMII CTCAG 2 cut(s) 592, 790
BseNI ACTGG 2 cut(s) 232, 449
BseRI GAGGAG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 3 cut(s) 467, 578, 585
BshFI GGCC 3 cut(s) 244, 636, 781
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 482
BsiSI CCGG 2 cut(s) 34, 726
BslI CCNNNNNNNGG 2 cut(s) 118, 132
BsmAI GTCTC 2 cut(s) 47, 723
BsnI GGCC 3 cut(s) 244, 636, 781
Bso31I GGTCTC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 482
Bsp13I TCCGGA 1 cut(s) 33
Bsp1407I TGTACA 2 cut(s) 237, 439
Bsp143I GATC 6 cut(s) 62, 198, 267, 432, 848, 884
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 2 cut(s) 744, 826
BspANI GGCC 3 cut(s) 244, 636, 781
BspCNI CTCAG 2 cut(s) 591, 789
BspEI TCCGGA 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 97
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 3 cut(s) 70, 193, 427
BspT104I TTCGAA 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 3 cut(s) 33, 480, 876
BsrGI TGTACA 2 cut(s) 237, 439
BsrI ACTGG 2 cut(s) 232, 449
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 6 cut(s) 62, 198, 267, 432, 848, 884
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 783
Bst6I CTCTTC 3 cut(s) 341, 407, 837
BstAUI TGTACA 2 cut(s) 237, 439
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 571, 634
BstDEI CTNAG 2 cut(s) 578, 776
BstDSI CCRYGG 1 cut(s) 57
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 6 cut(s) 65, 201, 270, 435, 851, 887
BstMAI GTCTC 2 cut(s) 47, 723
BstMBI GATC 6 cut(s) 62, 198, 267, 432, 848, 884
BstMWI GCNNNNNNNGC 2 cut(s) 170, 582
BstNI CCWGG 1 cut(s) 783
BstNSI RCATGY 1 cut(s) 796
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 781
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 3 cut(s) 467, 578, 585
BstX2I RGATCY 3 cut(s) 62, 267, 884
BstYI RGATCY 3 cut(s) 62, 267, 884
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 3 cut(s) 244, 636, 781
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 526
BtsI GCAGTG 2 cut(s) 492, 621
BtsIMutI CAGTG 4 cut(s) 442, 492, 621, 759
Cac8I GCNNGC 2 cut(s) 571, 634
Cfr13I GGNCC 1 cut(s) 31
CseI GACGC 1 cut(s) 486
Csp6I GTAC 5 cut(s) 81, 96, 238, 311, 440
CviAII CATG 6 cut(s) 58, 106, 303, 365, 437, 793
CviQI GTAC 5 cut(s) 81, 96, 238, 311, 440
DdeI CTNAG 2 cut(s) 578, 776
DpnI GATC 6 cut(s) 64, 200, 269, 434, 850, 886
DpnII GATC 6 cut(s) 62, 198, 267, 432, 848, 884
Eam1104I CTCTTC 3 cut(s) 341, 407, 837
EarI CTCTTC 3 cut(s) 341, 407, 837
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 2 cut(s) 244, 781
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 6 cut(s) 61, 109, 306, 368, 440, 796
FalI AAGNNNNNCTT 4 cut(s) 282, 314, 633, 665
FatI CATG 6 cut(s) 57, 105, 302, 364, 436, 792
Fnu4HI GCNGC 3 cut(s) 456, 567, 574
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 3 cut(s) 456, 567, 574
FspBI CTAG 3 cut(s) 246, 470, 570
GluI GCNGC 3 cut(s) 456, 567, 574
HaeIII GGCC 3 cut(s) 244, 636, 781
HapII CCGG 2 cut(s) 34, 726
HgaI GACGC 1 cut(s) 486
Hin1II CATG 6 cut(s) 61, 109, 306, 368, 440, 796
HindIII AAGCTT 2 cut(s) 162, 902
HinfI GANTC 1 cut(s) 254
HpaII CCGG 2 cut(s) 34, 726
HphI GGTGA 4 cut(s) 355, 421, 718, 733
Hpy166II GTNNAC 4 cut(s) 238, 442, 480, 709
Hpy188I TCNGA 3 cut(s) 259, 581, 853
Hpy188III TCNNGA 3 cut(s) 34, 501, 788
Hpy8I GTNNAC 4 cut(s) 238, 442, 480, 709
HpyAV CCTTC 2 cut(s) 112, 200
HpyCH4IV ACGT 2 cut(s) 186, 711
HpyCH4V TGCA 7 cut(s) 26, 480, 585, 596, 632, 701, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 582
HpyF3I CTNAG 2 cut(s) 578, 776
HpySE526I ACGT 2 cut(s) 186, 711
Hsp92II CATG 6 cut(s) 61, 109, 306, 368, 440, 796
Kpn2I TCCGGA 1 cut(s) 33
KpnI GGTACC 1 cut(s) 99
Kzo9I GATC 6 cut(s) 62, 198, 267, 432, 848, 884
LmnI GCTCC 3 cut(s) 452, 619, 800
Lsp1109I GCAGC 3 cut(s) 467, 578, 585
LweI GCATC 1 cut(s) 572
MaeI CTAG 3 cut(s) 246, 470, 570
MaeII ACGT 2 cut(s) 186, 711
MaeIII GTNAC 1 cut(s) 121
MalI GATC 6 cut(s) 64, 200, 269, 434, 850, 886
MboI GATC 6 cut(s) 62, 198, 267, 432, 848, 884
MflI RGATCY 3 cut(s) 62, 267, 884
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 7 cut(s) 75, 261, 379, 484, 821, 858, 867
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 587
MroI TCCGGA 1 cut(s) 33
MseI TTAA 2 cut(s) 378, 510
MspI CCGG 2 cut(s) 34, 726
MspR9I CCNGG 1 cut(s) 783
MvaI CCWGG 1 cut(s) 783
MwoI GCNNNNNNNGC 2 cut(s) 170, 582
NcoI CCATGG 1 cut(s) 57
NdeII GATC 6 cut(s) 62, 198, 267, 432, 848, 884
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 6 cut(s) 61, 109, 306, 368, 440, 796
NlaIV GGNNCC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 587
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 383
PceI AGGCCT 2 cut(s) 244, 781
PfeI GAWTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 3 cut(s) 457, 568, 575
Psp6I CCWGG 1 cut(s) 781
PspEI GGTNACC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 3 cut(s) 62, 267, 884
RsaI GTAC 5 cut(s) 82, 97, 239, 312, 441
RsaNI GTAC 5 cut(s) 81, 96, 238, 311, 440
SaqAI TTAA 2 cut(s) 378, 510
SatI GCNGC 3 cut(s) 456, 567, 574
Sau3AI GATC 6 cut(s) 62, 198, 267, 432, 848, 884
Sau96I GGNCC 1 cut(s) 31
ScrFI CCNGG 1 cut(s) 783
SduI GDGCHC 1 cut(s) 482
SfaNI GCATC 1 cut(s) 572
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 1 cut(s) 31
Sse9I AATT 7 cut(s) 75, 261, 379, 484, 821, 858, 867
SseBI AGGCCT 2 cut(s) 244, 781
SsiI CCGC 2 cut(s) 744, 826
SspMI CTAG 3 cut(s) 246, 470, 570
StuI AGGCCT 2 cut(s) 244, 781
StyD4I CCNGG 1 cut(s) 781
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 2 cut(s) 189, 714
TaqI TCGA 4 cut(s) 320, 383, 431, 819
TasI AATT 7 cut(s) 75, 261, 379, 484, 821, 858, 867
TatI WGTACW 3 cut(s) 237, 310, 439
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 378, 510
Tru9I TTAA 2 cut(s) 378, 510
TscAI CASTG 4 cut(s) 449, 499, 621, 766
TseI GCWGC 3 cut(s) 455, 566, 573
TspDTI ATGAA 3 cut(s) 122, 131, 291
TspGWI ACGGA 3 cut(s) 299, 668, 882
TspRI CASTG 4 cut(s) 449, 499, 621, 766
Van91I CCANNNNNTGG 1 cut(s) 132
VneI GTGCAC 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 821, 867
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XspI CTAG 3 cut(s) 246, 470, 570
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.