Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000174

Physical Location & Seq

Genomic Coordinates Reverse (-)

2486709 .. 2489794

Gene Structure 3086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGTCCAAAGCTACCAGCCTGCATGCAAAATTTGGGAGCATTGAGTTGCTACTTGATGTTCCCAGCAGTTGTCTAGGCATAAGCAAAAGAAAATGGCATTCTGCTTTCCTCACCATATATTGCTCTAGAGCCTTCCTGTCTTTACCACCTTCTTCTCAACCCCAAGACACCAAAGCCACAAAAGCCACATTCTTATCGCGCACAGTCTCATACTCCATTGTTAGTGTTGAATCAGTTTCCGTGCCAGCCATTAATGGCTTCAAAGTTGATCAAAAAAGCCTCACTAAGCTAGTGAAGGAGAAAAATCTCAACCAGCTTCTGGAGCTGGGAGGCATTGAAGAAGTGGCGTCAGTTCTCAAAACTGATGCAGTGCACGGAATTTCTGGTGATGATGCTGACGACATTGCCTCCAGGCACGAAGCATTTGGTTCCAATACATACAAGAAACCTCCAACGCAAGGATTCCTCCATTTTGTGTGGGAAGCCTTCAAAGACCTCACAATCCTAATCCTCTTGGGTTGTGCTGTGCTTTCTCTTGGATTCGGCATCAAAGAGCATGGATTGAAAGAAGGTTGGATTGACGGTGGAAGCATTTGTCTCGCGGTCATTCTGGTCATTTCTGTTTCAGCCATAAGCAACTACAGACAGAGCAGACAGTTTGACAAGTTGTCCAAAGTCAGCAACAATCTCCAAATTGAGGCTGTGAGAAATGGAAGGCGCCAACTGATTTCAATATTCGAAATTGTGGTGGGTGATGTCATCTGCTTGAAAATTGGAGATCAAGTTCCAGCTGATGGATTACTTCTAGAAGGCCACTCTTTATCAGTAGACGAATCAAGCATGACAGGGGAGAGCGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGGACTAAAATAGCTGATGGTTATGGTCGCATGCTTGTCACATCAGTCGGGATGAACACGAATTGGGGTGAAATGATGAGCCAAATTAGCCAAGACACCAGTGAAAAGACACCCCTGCAAGCACGTCTAGACAAGCTAACTTCTTCGATAGGTAAAGTTGGTTTGGCAGTTGCTTTCTTTGTTCTTGTAGTCATGTTGGTCAGATACTTCACAGGGAACACCAAGGATGAGAATGGAAACAAAGAGTACAATGGCAGCAAGACCAAATCTGACGACATAATAAATGCTGTCATTGGGATTGTAGCAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCATATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTCTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGACAAAACAGGCACTCTGACCATGAATCAGATGAAGGTAACTAAGTTTTGGTTGGGGAAAGAATCTGTGGAAGAAGAAGCTTATTCATCTATTTCTCCTTGTGTTCTCAACTTGATCCAAGAAGGGGTTTATCTCAACACAACTGGTAGTGTGTACAGGCCTAGATTGGATTCTGAAATTGAGATCTCTGGCAGTCCCACTGAAAAGGCTATTCTTTCATGGGTAGTACATGGGTCGAAGATAAATATGGAGGAAGTGGTGAAGAGCTGTAGCATTCTCCACGTCGAAGCCTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAGGCAGACAACTCAATCCATGTACACAGGAAAGGAGCAGCAGAAATGATACTAGCAATGTGTACAAGTTACTATGATGCCTCTGGAATTGTTAAGGATATGGATTACAATGAAAAAATGAACTTTGAGCAGATTATTCAAGGTATGGCAGCCAGCAGTCTCAGATGCATCGCGTTCGCGCATAAAGAAGTTCCAGCAGAGGAGCAAGTTGAAGGAGACCAGAAAGTTGTGCTAAAGGAAGATGGATTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGTCGTCCAGGTGTGAGAAAAGCAGTTGAAGATTGCCAATATGCAGGGGTGAATGTCAAAATGATTACCGGAGACAATGTTTTCACCGCCAAAGCCATAGCCACTGAGTGTGGGATACTCAGGCCTGGTCAGGCCATCCTTGGAGCAGTGATAGAAGGTGTCGAATTTCGCAACTACACGCCAGAAGAGAGAATGGAGAAAGTTGAGAAAATTTCCGTGATGGCAAGGTCTTCTCCGTTTGATAAGCTTCTAATGGTGCAATGCTTGAAACAGAAAGGTCATGTAGTTGCAGTGACGGGTGATGGCACCAATGATGCACCAGCATTAAAAGAAGCTGATATAGGACTTTCCATGGGGATTCAAGGAACAGAAGTGGCTAAAGAGAGCTCAGATATTGTGATCATGGATGATAACTTTGCTTCAGTTGCGACAGTTTTGATGTGGGGAAGATGTGTGTACAATAATATCCAGAAGTTCATACAATTCCAACTCACCGTCAATGTTGCAGCTCTTGTGATCAACTTTGTTGCAGCAGTTTCAGCAGGTCAAGTCCCATTAACAGCAGTTCAGTTATTGTGGGTCAACTTGATCATGGACACACTTGGAGCTCTTGCTCTTGCCACAGAAAAACCCACAAGAGAACTGATGGAGAAGCCACCAGTGGGAAGGACAGCGCCTCTCATCACAAACATCATGTGGAGGAACCTCTTGCCTCAAGCACTTGATAAGGTAAAGGACACGTTGATCTTCAACACTTTTGTGCTTTGCCAGGTGTTCAATGAGTTCAATGCGAGGAAGCTAGAGAAGAAGAATGTGTTCAAGGGAATACATACGAATAAGTTGTTCATGGGGATCATTGCAGTGACAATTGTTCTTCAGGTCGTGATGGTGGAGGTTCTCAAGAAATTTGCAGATACAGAGAGGTTGAATTGGGGACAATGGGGTGTATGCATAGGGATTGCAGTCATATCTTGGCCAATTGGTTGGCTAGTCAAGTCTATACCTGTTCCAGAGAAACCCATTTTCAGCTATCTGAAGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1008

Amino Acids

110.1

Weight (kDa)

7.19

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	109 - 178	1.1e-13	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	234 - 329	1.1e-20	P-type ATPase actuator domain
Hydrolase	PF00702	452 - 773	4.9e-14	haloacid dehalogenase-like hydrolase
Cation_ATPase	PF13246	492 - 663	1.3e-27	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	844 - 900	2.7e-17	Cation transporting ATPase, C-terminus
Cation_ATPase_C	PF00689	906 - 993	9.5e-21	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22910
fragaria_vesca	FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica	MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica	Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis	pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis	RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata	RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora	Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa	Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha	Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana	Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2513
AccB1I	GGYRCC	2 cut(s)	717, 2285
AccB7I	CCANNNNNTGG	2 cut(s)	319, 794
AccI	GTMKAC	2 cut(s)	828, 1246
AccII	CGCG	4 cut(s)	199, 602, 1871, 1877
AccIII	TCCGGA	1 cut(s)	1314
AciI	CCGC	2 cut(s)	602, 2067
AclWI	GGATC	4 cut(s)	1351, 1474, 1970, 2840
AcoI	YGGCCR	1 cut(s)	2954
AcsI	RAATTY	5 cut(s)	29, 378, 2144, 2190, 2885
AcuI	CTGAAG	2 cut(s)	2385, 2840
AcyI	GRCGYC	2 cut(s)	347, 718
AdeI	CACNNNGTG	1 cut(s)	2088
AfaI	GTAC	7 cut(s)	1148, 1363, 1520, 1593, 1722, 1762, 2438
AfiI	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1489, 2642
AflIII	ACRYGT	1 cut(s)	2718
AhdI	GACNNNNNGTC	1 cut(s)	667
AjiI	CACGTC	2 cut(s)	1025, 1648
AjnI	CCWGG	4 cut(s)	410, 1987, 2104, 2748
AleI	CACNNNNGTG	1 cut(s)	2738
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
Alw21I	GWGCWC	3 cut(s)	375, 2369, 2590
Alw26I	GTCTC	6 cut(s)	211, 602, 1328, 1862, 1908, 2046
Alw44I	GTGCAC	1 cut(s)	371
AlwI	GGATC	4 cut(s)	1351, 1474, 1970, 2840
AlwNI	CAGNNNCTG	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	1314
AoxI	GGCC	6 cut(s)	811, 1523, 1966, 2102, 2112, 2954
ApaLI	GTGCAC	1 cut(s)	371
ApeKI	GCWGC	7 cut(s)	1155, 1205, 1208, 1736, 1847, 2486, 2510
ApoI	RAATTY	5 cut(s)	29, 378, 2144, 2190, 2885
AseI	ATTAAT	1 cut(s)	252
Asp700I	GAANNNNTTC	2 cut(s)	887, 2795
AspLEI	GCGC	4 cut(s)	201, 720, 1879, 2656
AspS9I	GGNCC	2 cut(s)	1312, 1966
AsuII	TTCGAA	2 cut(s)	738, 1664
AvaII	GGWCC	1 cut(s)	1312
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	2956
BanI	GGYRCC	2 cut(s)	717, 2285
BanII	GRGCYC	2 cut(s)	2369, 2590
BbsI	GAAGAC	1 cut(s)	2202
Bbv12I	GWGCWC	3 cut(s)	375, 2369, 2590
BbvI	GCAGC	7 cut(s)	1167, 1217, 1220, 1748, 1859, 2498, 2522
BccI	CCATC	9 cut(s)	788, 911, 1288, 1934, 2123, 2194, 2276, 2620, 2860
BcgI	CGANNNNNNTGC	4 cut(s)	580, 614, 1855, 1889
BciT130I	CCWGG	4 cut(s)	412, 1989, 2106, 2750
BciVI	GTATCC	1 cut(s)	2088
BclI	TGATCA	4 cut(s)	268, 2379, 2496, 2568
BcoDI	GTCTC	6 cut(s)	211, 602, 1328, 1862, 1908, 2046
BfaI	CTAG	9 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 2780, 2969
BfmI	CTRYAG	2 cut(s)	640, 1633
BfoI	RGCGCY	2 cut(s)	721, 2657
BfuAI	ACCTGC	1 cut(s)	2513
BfuI	GTATCC	1 cut(s)	2088
BglII	AGATCT	1 cut(s)	1548
BisI	GCNGC	7 cut(s)	1156, 1206, 1209, 1737, 1848, 2487, 2511
BlsI	GCNGC	7 cut(s)	1157, 1207, 1210, 1738, 1849, 2488, 2512
Bme1390I	CCNGG	4 cut(s)	412, 1989, 2106, 2750
Bme18I	GGWCC	1 cut(s)	1312
BmeRI	GACNNNNNGTC	1 cut(s)	667
BmgBI	CACGTC	2 cut(s)	1025, 1648
BmgT120I	GGNCC	2 cut(s)	1312, 1966
BmiI	GGNNCC	4 cut(s)	430, 719, 2287, 2684
BmrFI	CCNGG	4 cut(s)	412, 1989, 2106, 2750
BmsI	GCATC	7 cut(s)	355, 382, 555, 1765, 1853, 1875, 2284
BpiI	GAAGAC	1 cut(s)	2202
BpmI	CTGGAG	2 cut(s)	341, 394
Bpu14I	TTCGAA	2 cut(s)	738, 1664
BpuEI	CTTGAG	2 cut(s)	2679, 2864
BsaHI	GRCGYC	2 cut(s)	347, 718
BsaI	GGTCTC	2 cut(s)	1328, 1908
BsaJI	CCNNGG	4 cut(s)	1122, 1338, 2119, 2331
BsaWI	WCCGGW	2 cut(s)	1314, 2048
BsaXI	ACNNNNNCTCC	8 cut(s)	392, 422, 768, 798, 1674, 1704, 2043, 2073
Bsc4I	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1489, 2642
Bse1I	ACTGG	3 cut(s)	999, 1513, 2639
Bse3DI	GCAATG	5 cut(s)	402, 1314, 1761, 2246, 2835
BseAI	TCCGGA	1 cut(s)	1314
BseBI	CCWGG	4 cut(s)	412, 1989, 2106, 2750
BseDI	CCNNGG	4 cut(s)	1122, 1338, 2119, 2331
BseGI	GGATG	4 cut(s)	957, 1132, 2115, 2392
BseLI	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1489, 2642
BseMI	GCAATG	5 cut(s)	402, 1314, 1761, 2246, 2835
BseMII	CTCAG	5 cut(s)	870, 1873, 2076, 2113, 2382
BseNI	ACTGG	3 cut(s)	999, 1513, 2639
BseRI	GAGGAG	1 cut(s)	1913
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	7 cut(s)	1167, 1217, 1220, 1748, 1859, 2498, 2522
BseYI	CCCAGC	2 cut(s)	62, 325
Bsh1236I	CGCG	4 cut(s)	199, 602, 1871, 1877
BshFI	GGCC	6 cut(s)	813, 1525, 1968, 2104, 2114, 2956
BshNI	GGYRCC	2 cut(s)	717, 2285
BsiHKAI	GWGCWC	3 cut(s)	375, 2369, 2590
BsiSI	CCGG	2 cut(s)	1315, 2049
BslFI	GGGAC	5 cut(s)	916, 1545, 1971, 2516, 2928
BslI	CCNNNNNNNGG	6 cut(s)	319, 458, 697, 794, 1489, 2642
BsmAI	GTCTC	6 cut(s)	211, 602, 1328, 1862, 1908, 2046
BsmFI	GGGAC	5 cut(s)	916, 1545, 1971, 2516, 2928
BsmI	GAATGC	2 cut(s)	97, 1638
BsnI	GGCC	6 cut(s)	813, 1525, 1968, 2104, 2114, 2956
Bso31I	GGTCTC	2 cut(s)	1328, 1908
Bsp119I	TTCGAA	2 cut(s)	738, 1664
Bsp1286I	GDGCHC	3 cut(s)	375, 2369, 2590
Bsp13I	TCCGGA	1 cut(s)	1314
Bsp1407I	TGTACA	4 cut(s)	1518, 1720, 1760, 2436
Bsp19I	CCATGG	2 cut(s)	1338, 2331
BspACI	CCGC	2 cut(s)	602, 2067
BspANI	GGCC	6 cut(s)	813, 1525, 1968, 2104, 2114, 2956
BspCNI	CTCAG	5 cut(s)	871, 1872, 2077, 2112, 2381
BspEI	TCCGGA	1 cut(s)	1314
BspFNI	CGCG	4 cut(s)	199, 602, 1871, 1877
BspLI	GGNNCC	4 cut(s)	430, 719, 2287, 2684
BspMI	ACCTGC	1 cut(s)	2513
BspPI	GGATC	4 cut(s)	1351, 1474, 1970, 2840
BspQI	GCTCTTC	1 cut(s)	1622
BspT104I	TTCGAA	2 cut(s)	738, 1664
BspT107I	GGYRCC	2 cut(s)	717, 2285
BspTNI	GGTCTC	2 cut(s)	1328, 1908
BsrDI	GCAATG	5 cut(s)	402, 1314, 1761, 2246, 2835
BsrGI	TGTACA	4 cut(s)	1518, 1720, 1760, 2436
BsrI	ACTGG	3 cut(s)	999, 1513, 2639
BssECI	CCNNGG	4 cut(s)	1122, 1338, 2119, 2331
BssNI	GRCGYC	2 cut(s)	347, 718
BssT1I	CCWWGG	4 cut(s)	1122, 1338, 2119, 2331
Bst2UI	CCWGG	4 cut(s)	412, 1989, 2106, 2750
Bst4CI	ACNGT	5 cut(s)	205, 584, 657, 2413, 2476
Bst6I	CTCTTC	4 cut(s)	1280, 1622, 1688, 2160
BstACI	GRCGYC	2 cut(s)	347, 718
BstAUI	TGTACA	4 cut(s)	1518, 1720, 1760, 2436
BstBI	TTCGAA	2 cut(s)	738, 1664
BstC8I	GCNNGC	6 cut(s)	20, 24, 246, 932, 1020, 1852
BstDEI	CTNAG	7 cut(s)	285, 879, 1407, 1859, 2085, 2099, 2368
BstDSI	CCRYGG	2 cut(s)	1338, 2331
BstF5I	GGATG	4 cut(s)	957, 1132, 2115, 2392
BstFNI	CGCG	4 cut(s)	199, 602, 1871, 1877
BstH2I	RGCGCY	2 cut(s)	721, 2657
BstHHI	GCGC	4 cut(s)	201, 720, 1879, 2656
BstMAI	GTCTC	6 cut(s)	211, 602, 1328, 1862, 1908, 2046
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 322, 987, 2405, 2519
BstNI	CCWGG	4 cut(s)	412, 1989, 2106, 2750
BstNSI	RCATGY	2 cut(s)	26, 934
BstSCI	CCNGG	4 cut(s)	410, 1987, 2104, 2748
BstSFI	CTRYAG	2 cut(s)	640, 1633
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	4 cut(s)	199, 602, 1871, 1877
BstV1I	GCAGC	7 cut(s)	1167, 1217, 1220, 1748, 1859, 2498, 2522
BstV2I	GAAGAC	1 cut(s)	2202
BstX2I	RGATCY	3 cut(s)	1343, 1548, 1975
BstXI	CCANNNNNNTGG	1 cut(s)	2964
BstYI	RGATCY	3 cut(s)	1343, 1548, 1975
BsuI	GTATCC	1 cut(s)	2088
BsuRI	GGCC	6 cut(s)	813, 1525, 1968, 2104, 2114, 2956
BtgI	CCRYGG	2 cut(s)	1338, 2331
BtgZI	GCGATG	1 cut(s)	1852
BtrI	CACGTC	2 cut(s)	1025, 1648
BtsCI	GGATG	4 cut(s)	957, 1132, 2115, 2392
BtsI	GCAGTG	4 cut(s)	375, 2133, 2277, 2847
BtsIMutI	CAGTG	9 cut(s)	375, 876, 1006, 1563, 2082, 2133, 2277, 2646, 2847
BveI	ACCTGC	1 cut(s)	2513
Cac8I	GCNNGC	6 cut(s)	20, 24, 246, 932, 1020, 1852
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	4 cut(s)	201, 720, 1879, 2656
Cfr13I	GGNCC	2 cut(s)	1312, 1966
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	7 cut(s)	1147, 1362, 1519, 1592, 1721, 1761, 2437
CspCI	CAANNNNNGTGG	2 cut(s)	1206, 1241
CviQI	GTAC	7 cut(s)	1147, 1362, 1519, 1592, 1721, 1761, 2437
DdeI	CTNAG	7 cut(s)	285, 879, 1407, 1859, 2085, 2099, 2368
DinI	GGCGCC	1 cut(s)	719
DraIII	CACNNNGTG	1 cut(s)	2088
DriI	GACNNNNNGTC	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	2954
Eam1104I	CTCTTC	4 cut(s)	1280, 1622, 1688, 2160
Eam1105I	GACNNNNNGTC	1 cut(s)	667
EarI	CTCTTC	4 cut(s)	1280, 1622, 1688, 2160
Ecl136II	GAGCTC	2 cut(s)	2367, 2588
Eco130I	CCWWGG	4 cut(s)	1122, 1338, 2119, 2331
Eco147I	AGGCCT	2 cut(s)	1525, 2104
Eco24I	GRGCYC	2 cut(s)	2369, 2590
Eco31I	GGTCTC	2 cut(s)	1328, 1908
Eco47I	GGWCC	1 cut(s)	1312
Eco53kI	GAGCTC	2 cut(s)	2367, 2588
Eco57I	CTGAAG	2 cut(s)	2385, 2840
EcoICRI	GAGCTC	2 cut(s)	2367, 2588
EcoRII	CCWGG	4 cut(s)	410, 1987, 2104, 2748
EcoT14I	CCWWGG	4 cut(s)	1122, 1338, 2119, 2331
EcoT22I	ATGCAT	2 cut(s)	1868, 2933
EcoT38I	GRGCYC	2 cut(s)	2369, 2590
EgeI	GGCGCC	1 cut(s)	719
EheI	GGCGCC	1 cut(s)	719
ErhI	CCWWGG	4 cut(s)	1122, 1338, 2119, 2331
FaqI	GGGAC	5 cut(s)	916, 1545, 1971, 2516, 2928
FbaI	TGATCA	4 cut(s)	268, 2379, 2496, 2568
FblI	GTMKAC	2 cut(s)	828, 1246
Fnu4HI	GCNGC	7 cut(s)	1156, 1206, 1209, 1737, 1848, 2487, 2511
FokI	GGATG	4 cut(s)	964, 1139, 2102, 2399
FriOI	GRGCYC	2 cut(s)	2369, 2590
Fsp4HI	GCNGC	7 cut(s)	1156, 1206, 1209, 1737, 1848, 2487, 2511
FspBI	CTAG	9 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 2780, 2969
GlaI	GCGC	4 cut(s)	200, 719, 1878, 2655
GluI	GCNGC	7 cut(s)	1156, 1206, 1209, 1737, 1848, 2487, 2511
GsaI	CCCAGC	2 cut(s)	66, 329
GsuI	CTGGAG	2 cut(s)	341, 394
HaeII	RGCGCY	2 cut(s)	721, 2657
HaeIII	GGCC	6 cut(s)	813, 1525, 1968, 2104, 2114, 2956
HapII	CCGG	2 cut(s)	1315, 2049
HgaI	GACGC	1 cut(s)	336
HhaI	GCGC	4 cut(s)	201, 720, 1879, 2656
Hin1I	GRCGYC	2 cut(s)	347, 718
Hin6I	GCGC	4 cut(s)	199, 718, 1877, 2654
HinP1I	GCGC	4 cut(s)	199, 718, 1877, 2654
HincII	GTYRAC	1 cut(s)	2563
HindII	GTYRAC	1 cut(s)	2563
HindIII	AAGCTT	2 cut(s)	1443, 2225
HpaII	CCGG	2 cut(s)	1315, 2049
Hpy166II	GTNNAC	8 cut(s)	373, 829, 1247, 1519, 1723, 1761, 2437, 2563
Hpy188I	TCNGA	8 cut(s)	1103, 1171, 1383, 1395, 1540, 1862, 2371, 3015
Hpy8I	GTNNAC	8 cut(s)	373, 829, 1247, 1519, 1723, 1761, 2437, 2563
Hpy99I	CGWCG	1 cut(s)	1652
HpyCH4III	ACNGT	5 cut(s)	205, 584, 657, 2413, 2476
HpyCH4IV	ACGT	3 cut(s)	1024, 1647, 2720
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 322, 987, 2405, 2519
HpyF3I	CTNAG	7 cut(s)	285, 879, 1407, 1859, 2085, 2099, 2368
HpySE526I	ACGT	3 cut(s)	1024, 1647, 2720
Hsp92I	GRCGYC	2 cut(s)	347, 718
HspAI	GCGC	4 cut(s)	199, 718, 1877, 2654
KasI	GGCGCC	1 cut(s)	717
Kpn2I	TCCGGA	1 cut(s)	1314
Ksp22I	TGATCA	4 cut(s)	268, 2379, 2496, 2568
LguI	GCTCTTC	1 cut(s)	1622
LmnI	GCTCC	6 cut(s)	36, 322, 1733, 1900, 2123, 2585
Lsp1109I	GCAGC	7 cut(s)	1167, 1217, 1220, 1748, 1859, 2498, 2522
LweI	GCATC	7 cut(s)	355, 382, 555, 1765, 1853, 1875, 2284
MaeI	CTAG	9 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 2780, 2969
MaeII	ACGT	3 cut(s)	1024, 1647, 2720
MaeIII	GTNAC	8 cut(s)	874, 937, 1213, 1258, 1402, 1766, 2272, 2842
MfeI	CAATTG	3 cut(s)	1218, 2847, 2958
MflI	RGATCY	3 cut(s)	1343, 1548, 1975
MhlI	GDGCHC	3 cut(s)	375, 2369, 2590
MlsI	TGGCCA	1 cut(s)	2956
MluNI	TGGCCA	1 cut(s)	2956
Mly113I	GGCGCC	1 cut(s)	718
MlyI	GAGTC	1 cut(s)	1255
MmeI	TCCRAC	3 cut(s)	476, 554, 2491
Mox20I	TGGCCA	1 cut(s)	2956
Mph1103I	ATGCAT	2 cut(s)	1868, 2933
MroI	TCCGGA	1 cut(s)	1314
MroXI	GAANNNNTTC	2 cut(s)	887, 2795
MscI	TGGCCA	1 cut(s)	2956
MseI	TTAA	6 cut(s)	252, 1659, 1791, 1971, 2306, 2537
MslI	CAYNNNNRTG	2 cut(s)	2738, 2840
Msp20I	TGGCCA	1 cut(s)	2956
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	2 cut(s)	1315, 2049
MspR9I	CCNGG	4 cut(s)	412, 1989, 2106, 2750
MunI	CAATTG	3 cut(s)	1218, 2847, 2958
Mva1269I	GAATGC	2 cut(s)	97, 1638
MvaI	CCWGG	4 cut(s)	412, 1989, 2106, 2750
MvnI	CGCG	4 cut(s)	199, 602, 1871, 1877
MwoI	GCNNNNNNNGC	5 cut(s)	182, 322, 987, 2405, 2519
NarI	GGCGCC	1 cut(s)	718
NcoI	CCATGG	2 cut(s)	1338, 2331
NlaIV	GGNNCC	4 cut(s)	430, 719, 2287, 2684
NmuCI	GTSAC	5 cut(s)	874, 937, 1258, 2272, 2842
NsiI	ATGCAT	2 cut(s)	1868, 2933
NspI	RCATGY	2 cut(s)	26, 934
NspV	TTCGAA	2 cut(s)	738, 1664
OliI	CACNNNNGTG	1 cut(s)	2738
PaeI	GCATGC	2 cut(s)	26, 934
PceI	AGGCCT	2 cut(s)	1525, 2104
PciSI	GCTCTTC	1 cut(s)	1622
PctI	GAATGC	2 cut(s)	97, 1638
PdmI	GAANNNNTTC	2 cut(s)	887, 2795
PfeI	GAWTC	9 cut(s)	230, 462, 540, 833, 883, 1390, 1427, 1535, 2338
PflMI	CCANNNNNTGG	2 cut(s)	319, 794
PkrI	GCNGC	7 cut(s)	1157, 1207, 1210, 1738, 1849, 2488, 2512
PleI	GAGTC	1 cut(s)	1255
PluTI	GGCGCC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	1255
PshBI	ATTAAT	1 cut(s)	252
Psp124BI	GAGCTC	2 cut(s)	2369, 2590
Psp6I	CCWGG	4 cut(s)	410, 1987, 2104, 2748
PspFI	CCCAGC	2 cut(s)	62, 325
PspGI	CCWGG	4 cut(s)	410, 1987, 2104, 2748
PspN4I	GGNNCC	4 cut(s)	430, 719, 2287, 2684
PspPI	GGNCC	2 cut(s)	1312, 1966
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	3 cut(s)	1343, 1548, 1975
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	7 cut(s)	1148, 1363, 1520, 1593, 1722, 1762, 2438
RsaNI	GTAC	7 cut(s)	1147, 1362, 1519, 1592, 1721, 1761, 2437
RseI	CAYNNNNRTG	2 cut(s)	2738, 2840
SacI	GAGCTC	2 cut(s)	2369, 2590
SapI	GCTCTTC	1 cut(s)	1622
SaqAI	TTAA	6 cut(s)	252, 1659, 1791, 1971, 2306, 2537
SatI	GCNGC	7 cut(s)	1156, 1206, 1209, 1737, 1848, 2487, 2511
Sau96I	GGNCC	2 cut(s)	1312, 1966
SchI	GAGTC	1 cut(s)	1255
ScrFI	CCNGG	4 cut(s)	412, 1989, 2106, 2750
SduI	GDGCHC	3 cut(s)	375, 2369, 2590
SfaNI	GCATC	7 cut(s)	355, 382, 555, 1765, 1853, 1875, 2284
SfcI	CTRYAG	2 cut(s)	640, 1633
SfoI	GGCGCC	1 cut(s)	719
SfuI	TTCGAA	2 cut(s)	738, 1664
SinI	GGWCC	1 cut(s)	1312
SmiMI	CAYNNNNRTG	2 cut(s)	2738, 2840
SmlI	CTYRAG	2 cut(s)	2694, 2879
SmoI	CTYRAG	2 cut(s)	2694, 2879
SphI	GCATGC	2 cut(s)	26, 934
SseBI	AGGCCT	2 cut(s)	1525, 2104
SsiI	CCGC	2 cut(s)	602, 2067
SspDI	GGCGCC	1 cut(s)	717
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	9 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 2780, 2969
SstI	GAGCTC	2 cut(s)	2369, 2590
StuI	AGGCCT	2 cut(s)	1525, 2104
StyD4I	CCNGG	4 cut(s)	410, 1987, 2104, 2748
StyI	CCWWGG	4 cut(s)	1122, 1338, 2119, 2331
TaaI	ACNGT	5 cut(s)	205, 584, 657, 2413, 2476
TaiI	ACGT	3 cut(s)	1027, 1650, 2723
TaqI	TCGA	6 cut(s)	738, 1046, 1601, 1650, 1664, 2142
TatI	WGTACW	6 cut(s)	1146, 1518, 1591, 1720, 1760, 2436
TfiI	GAWTC	9 cut(s)	230, 462, 540, 833, 883, 1390, 1427, 1535, 2338
Tru1I	TTAA	6 cut(s)	252, 1659, 1791, 1971, 2306, 2537
Tru9I	TTAA	6 cut(s)	252, 1659, 1791, 1971, 2306, 2537
TscAI	CASTG	9 cut(s)	375, 883, 1006, 1570, 2089, 2133, 2277, 2646, 2847
TseFI	GTSAC	5 cut(s)	874, 937, 1258, 2272, 2842
TseI	GCWGC	7 cut(s)	1155, 1205, 1208, 1736, 1847, 2486, 2510
Tsp45I	GTSAC	5 cut(s)	874, 937, 1258, 2272, 2842
TspGWI	ACGGA	4 cut(s)	229, 390, 2185, 2205
TspRI	CASTG	9 cut(s)	375, 883, 1006, 1570, 2089, 2133, 2277, 2646, 2847
Van91I	CCANNNNNTGG	2 cut(s)	319, 794
VneI	GTGCAC	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	1312
VspI	ATTAAT	1 cut(s)	252
XapI	RAATTY	5 cut(s)	29, 378, 2144, 2190, 2885
XbaI	TCTAGA	3 cut(s)	125, 805, 1027
XceI	RCATGY	2 cut(s)	26, 934
XmiI	GTMKAC	2 cut(s)	828, 1246
XmnI	GAANNNNTTC	2 cut(s)	887, 2795
XspI	CTAG	9 cut(s)	74, 126, 290, 806, 1028, 1527, 1751, 2780, 2969
Zsp2I	ATGCAT	2 cut(s)	1868, 2933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.