RLG00000010043

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
62054065 .. 62058212
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010043

Sequence Viewer

Length: 1158 bp
ATGAAAGGGGACAGCGACCATGTTGAGATTAGTGTCACTGAGAATCCTTTCTTGTTCTCTGGAACTAAAATAGCTGATGGTTATGGTCGCATGCTTGTCACATCAGTTGGGATGAACACGAATTCGGTTGAAATGATGAGCCAAATTAGCCAAGACAACAGTGAAAAGACACCCCTGCAAGCACGTCTAGACAAGCTAACTTCTTCGATAGCAGCAGTTACAATTGTTGTGGTAGCAATTCCAGAAGGTCTACCATTAGCTGTGACTCTCACTCTTGCTTATTCCATGAAGAGAATGATGGTTGATAATGCAATGGTCCGGAAGCTCTTTGCTTGTGAGACCATGGGATCTGCTACAACAATTTGTACCGAAAAAACAGGGGTTTCTCTCAACACAACTGGTAGTGTGTACAGGCCTAGCTTGGATTCTGAAATTGAGATCTCTGGCAGTCCAACTGAAAAGGCTATTCTTTCATGGGCTGTACATGGGTCGAAGATGGATATGGAGAAAGTGGGGAAGAGTTGTAGCATTCTCCACGTCGAAGCTTTTAATTCGAAGAAGAAACAAAGTGGAGTTCTGGTGAAGAGAAAGGCAGATAACTCAATCCATTTACACTGGAAAGGAGCAGCAGAGATGATACTGGCAATGTGCAAAAGTTACTACAATGCCACTGGAGTTGTTAAGGATATGGATGAGAATGAAAAAAGGAAGTTTGAGCATATTATTCAAGGTATGGCAGCTAGCAGTCTCAGATGCATAGCGTTTGCACATAAACAAGTTCCAGCAGAGGAGCAACTAACTGCAGACCAGAAAGTTTTGCTAAAGGAAGATGGCTTGACCCTATTGGGACTTGTGGGCCTTAAAGATCCATGTCGTCCAAGTGTCAGAAAAGCAGTTGAAGATTGCCAATATGCAAGGGTGAACGTCAAAATGATTACCGGAGACAATGTTTTCACCGCACAAGCCATAGCCACTGAGTGTGGGATACTCTGGCCTGGTCAAGACATGCTCGGAGCAATGATAGAAGGTGTTGAATTTCGCAACTACAGGCCAGAAGAGAGAGTGGAGAAAGTTGAGAAAATTTCCGTGATGGCAAGGTCTTTTATTACGCCCCAAACCAAAATATCATTTGTTTACTTGTGGAAAAACGAAAGTTAA

Protein Analysis

386

Amino Acids

42.37

Weight (kDa)

7.56

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase PF13246 142 - 293 5e-28 P-type ATPase, cytoplasmic domain N
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 1 cut(s) 957
AclWI GGATC 2 cut(s) 355, 860
AcsI RAATTY 3 cut(s) 121, 1034, 1080
AdeI CACNNNGTG 1 cut(s) 978
AfaI GTAC 3 cut(s) 367, 410, 483
AgsI TTSAA 4 cut(s) 131, 728, 899, 1034
AjiI CACGTC 2 cut(s) 185, 538
AjnI CCWGG 1 cut(s) 994
AluBI AGCT 7 cut(s) 74, 196, 260, 325, 420, 545, 740
AluI AGCT 7 cut(s) 74, 196, 260, 325, 420, 545, 740
Alw26I GTCTC 3 cut(s) 332, 752, 936
AlwI GGATC 2 cut(s) 355, 860
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 4 cut(s) 413, 856, 992, 1049
ApeKI GCWGC 3 cut(s) 212, 626, 737
ApoI RAATTY 3 cut(s) 121, 1034, 1080
Asp700I GAANNNNTTC 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 316, 856
AsuHPI GGTGA 3 cut(s) 592, 931, 946
AsuII TTCGAA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 740
AvaII GGWCC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 224, 638, 749
BccI CCATC 5 cut(s) 71, 292, 490, 824, 1084
BciT130I CCWGG 1 cut(s) 996
BciVI GTATCC 1 cut(s) 978
BcoDI GTCTC 3 cut(s) 332, 752, 936
BfaI CTAG 3 cut(s) 188, 417, 741
BfmI CTRYAG 2 cut(s) 801, 1045
BfuI GTATCC 1 cut(s) 978
BglII AGATCT 1 cut(s) 438
BisI GCNGC 3 cut(s) 213, 627, 738
BlsI GCNGC 3 cut(s) 214, 628, 739
Bme1390I CCNGG 1 cut(s) 996
Bme18I GGWCC 1 cut(s) 316
BmgBI CACGTC 2 cut(s) 185, 538
BmgT120I GGNCC 2 cut(s) 316, 856
BmrFI CCNGG 1 cut(s) 996
BmsI GCATC 1 cut(s) 743
BmtI GCTAGC 1 cut(s) 744
BpmI CTGGAG 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 2 cut(s) 318, 938
BsaXI ACNNNNNCTCC 4 cut(s) 564, 594, 933, 963
Bse1I ACTGG 4 cut(s) 403, 620, 645, 676
Bse3DI GCAATG 3 cut(s) 318, 651, 1023
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 1 cut(s) 996
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 117, 697
BseMI GCAATG 3 cut(s) 318, 651, 1023
BseMII CTCAG 3 cut(s) 30, 763, 966
BseNI ACTGG 4 cut(s) 403, 620, 645, 676
BseRI GAGGAG 1 cut(s) 803
BseXI GCAGC 3 cut(s) 224, 638, 749
BshFI GGCC 4 cut(s) 415, 858, 994, 1051
BsiSI CCGG 2 cut(s) 319, 939
BslFI GGGAC 2 cut(s) 23, 861
BsmAI GTCTC 3 cut(s) 332, 752, 936
BsmFI GGGAC 2 cut(s) 23, 861
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 4 cut(s) 415, 858, 994, 1051
Bso31I GGTCTC 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 554
Bsp13I TCCGGA 1 cut(s) 318
Bsp1407I TGTACA 2 cut(s) 408, 481
Bsp143I GATC 3 cut(s) 347, 438, 865
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 1 cut(s) 957
BspANI GGCC 4 cut(s) 415, 858, 994, 1051
BspCNI CTCAG 3 cut(s) 31, 762, 967
BspEI TCCGGA 1 cut(s) 318
BspMAI CTGCAG 1 cut(s) 805
BspOI GCTAGC 1 cut(s) 744
BspPI GGATC 2 cut(s) 355, 860
BspT104I TTCGAA 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 3 cut(s) 318, 651, 1023
BsrGI TGTACA 2 cut(s) 408, 481
BsrI ACTGG 4 cut(s) 403, 620, 645, 676
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 3 cut(s) 347, 438, 865
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 996
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 4 cut(s) 284, 512, 578, 1050
BstAUI TGTACA 2 cut(s) 408, 481
BstBI TTCGAA 1 cut(s) 554
BstC8I GCNNGC 3 cut(s) 92, 180, 742
BstDEI CTNAG 3 cut(s) 39, 749, 975
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 117, 697
BstKTI GATC 3 cut(s) 350, 441, 868
BstMAI GTCTC 3 cut(s) 332, 752, 936
BstMBI GATC 3 cut(s) 347, 438, 865
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 1 cut(s) 996
BstNSI RCATGY 2 cut(s) 94, 1009
BstSCI CCNGG 1 cut(s) 994
BstSFI CTRYAG 2 cut(s) 801, 1045
BstV1I GCAGC 3 cut(s) 224, 638, 749
BstX2I RGATCY 3 cut(s) 347, 438, 865
BstYI RGATCY 3 cut(s) 347, 438, 865
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 4 cut(s) 415, 858, 994, 1051
BtgI CCRYGG 1 cut(s) 342
BtrI CACGTC 2 cut(s) 185, 538
BtsCI GGATG 2 cut(s) 117, 697
BtsIMutI CAGTG 5 cut(s) 36, 166, 613, 669, 972
Cac8I GCNNGC 3 cut(s) 92, 180, 742
Cfr13I GGNCC 2 cut(s) 316, 856
Csp6I GTAC 3 cut(s) 366, 409, 482
CspCI CAANNNNNGTGG 4 cut(s) 210, 245, 658, 693
CviAII CATG 8 cut(s) 20, 91, 286, 343, 474, 485, 870, 1006
CviQI GTAC 3 cut(s) 366, 409, 482
DdeI CTNAG 3 cut(s) 39, 749, 975
DpnI GATC 3 cut(s) 349, 440, 867
DpnII GATC 3 cut(s) 347, 438, 865
DraIII CACNNNGTG 1 cut(s) 978
Eam1104I CTCTTC 4 cut(s) 284, 512, 578, 1050
EarI CTCTTC 4 cut(s) 284, 512, 578, 1050
Eco130I CCWWGG 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 994
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 8 cut(s) 23, 94, 289, 346, 477, 488, 873, 1009
FaqI GGGAC 2 cut(s) 23, 861
FatI CATG 8 cut(s) 19, 90, 285, 342, 473, 484, 869, 1005
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 213, 627, 738
FokI GGATG 2 cut(s) 124, 704
Fsp4HI GCNGC 3 cut(s) 213, 627, 738
FspBI CTAG 3 cut(s) 188, 417, 741
GluI GCNGC 3 cut(s) 213, 627, 738
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 4 cut(s) 415, 858, 994, 1051
HapII CCGG 2 cut(s) 319, 939
Hin1II CATG 8 cut(s) 23, 94, 289, 346, 477, 488, 873, 1009
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 3 cut(s) 43, 265, 425
HpaII CCGG 2 cut(s) 319, 939
HphI GGTGA 3 cut(s) 592, 931, 946
Hpy166II GTNNAC 4 cut(s) 251, 409, 922, 1135
Hpy188I TCNGA 4 cut(s) 430, 752, 887, 1013
Hpy188III TCNNGA 5 cut(s) 60, 188, 242, 319, 1001
Hpy8I GTNNAC 4 cut(s) 251, 409, 922, 1135
Hpy99I CGWCG 1 cut(s) 542
HpyAV CCTTC 2 cut(s) 239, 1019
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 3 cut(s) 184, 537, 924
HpyCH4V TGCA 7 cut(s) 178, 311, 651, 756, 767, 803, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 3 cut(s) 39, 749, 975
HpySE526I ACGT 3 cut(s) 184, 537, 924
Hsp92II CATG 8 cut(s) 23, 94, 289, 346, 477, 488, 873, 1009
Kpn2I TCCGGA 1 cut(s) 318
Kzo9I GATC 3 cut(s) 347, 438, 865
LmnI GCTCC 3 cut(s) 623, 790, 1013
Lsp1109I GCAGC 3 cut(s) 224, 638, 749
LweI GCATC 1 cut(s) 743
MaeI CTAG 3 cut(s) 188, 417, 741
MaeII ACGT 3 cut(s) 184, 537, 924
MaeIII GTNAC 5 cut(s) 34, 97, 217, 262, 656
MalI GATC 3 cut(s) 349, 440, 867
MboI GATC 3 cut(s) 347, 438, 865
MfeI CAATTG 1 cut(s) 222
MflI RGATCY 3 cut(s) 347, 438, 865
MluCI AATT 9 cut(s) 121, 144, 222, 237, 360, 432, 550, 1034, 1080
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 1 cut(s) 781
Mph1103I ATGCAT 1 cut(s) 758
MroI TCCGGA 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 4 cut(s) 549, 681, 861, 1156
MspI CCGG 2 cut(s) 319, 939
MspR9I CCNGG 1 cut(s) 996
MunI CAATTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 528
MvaI CCWGG 1 cut(s) 996
MwoI GCNNNNNNNGC 1 cut(s) 147
NcoI CCATGG 1 cut(s) 342
NdeII GATC 3 cut(s) 347, 438, 865
NheI GCTAGC 1 cut(s) 740
NlaIII CATG 8 cut(s) 23, 94, 289, 346, 477, 488, 873, 1009
NmuCI GTSAC 3 cut(s) 34, 97, 262
NsiI ATGCAT 1 cut(s) 758
NspI RCATGY 2 cut(s) 94, 1009
NspV TTCGAA 1 cut(s) 554
PaeI GCATGC 1 cut(s) 94
PceI AGGCCT 1 cut(s) 415
PctI GAATGC 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 43, 425
PkrI GCNGC 3 cut(s) 214, 628, 739
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 994
PspGI CCWGG 1 cut(s) 994
PspPI GGNCC 2 cut(s) 316, 856
PstI CTGCAG 1 cut(s) 805
PsuI RGATCY 3 cut(s) 347, 438, 865
RsaI GTAC 3 cut(s) 367, 410, 483
RsaNI GTAC 3 cut(s) 366, 409, 482
SaqAI TTAA 4 cut(s) 549, 681, 861, 1156
SatI GCNGC 3 cut(s) 213, 627, 738
Sau3AI GATC 3 cut(s) 347, 438, 865
Sau96I GGNCC 2 cut(s) 316, 856
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 996
SfaNI GCATC 1 cut(s) 743
SfcI CTRYAG 2 cut(s) 801, 1045
SfuI TTCGAA 1 cut(s) 554
SinI GGWCC 1 cut(s) 316
SphI GCATGC 1 cut(s) 94
Sse9I AATT 9 cut(s) 121, 144, 222, 237, 360, 432, 550, 1034, 1080
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 1 cut(s) 957
SspMI CTAG 3 cut(s) 188, 417, 741
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 994
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 3 cut(s) 187, 540, 927
TaqI TCGA 4 cut(s) 206, 491, 540, 554
TasI AATT 9 cut(s) 121, 144, 222, 237, 360, 432, 550, 1034, 1080
TatI WGTACW 2 cut(s) 408, 481
TfiI GAWTC 2 cut(s) 43, 425
Tru1I TTAA 4 cut(s) 549, 681, 861, 1156
Tru9I TTAA 4 cut(s) 549, 681, 861, 1156
TscAI CASTG 5 cut(s) 43, 166, 620, 676, 979
TseFI GTSAC 3 cut(s) 34, 97, 262
TseI GCWGC 3 cut(s) 212, 626, 737
Tsp45I GTSAC 3 cut(s) 34, 97, 262
TspDTI ATGAA 5 cut(s) 17, 128, 302, 462, 714
TspGWI ACGGA 1 cut(s) 1075
TspRI CASTG 5 cut(s) 43, 166, 620, 676, 979
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 3 cut(s) 121, 1034, 1080
XbaI TCTAGA 1 cut(s) 187
XceI RCATGY 2 cut(s) 94, 1009
XmiI GTMKAC 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 3 cut(s) 188, 417, 741
Zsp2I ATGCAT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.