Rorug05G0175500

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
16320961 .. 16323768
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0175500.1

Sequence Viewer

Length: 810 bp
ATGCAGCAGCAGCAACAACAACAACAGCAGCCTGTGGTTGGTGTTGTGGCCGGTTCTGGTCAGATGTCTTATGCTCCTCCGTCCTATCAAACTGCTCCGATGGTGGCTTCTGGAACTCCTGCTGTGGTCATCCCTTCCCCTACACAGCCACCCCCGACATTCTCTAATTCCCCACATCAGATAGCCTACCAGCAAGCCCAGCACTTCCACAGCCAACAGCAGCAGCAACAACAACAGCAGCTTCAGGTGTTCTGGGGCAACCAAATGCAAGACATTGAGCAAACAACTGACTTCAAGAATCACAGCCTTCCACTTGCTAGAATTAAGAAAATCATGAAAGCTGATGAGGATGTCCGAATGATATCAGCTGAGGCTCCAGTGATATTTGCAAAGGCATGTGAAATATTCATCTTGGAGCTGACTTTGCGCTCATGGATTCACACAGAAGAGAACAAGAGGAGAACATTACAAAAGAATGATATTGCAGCTGCTATTTCAAGGACTGATGTGTTCGATTTTCTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAGGAGGGACTTGGAGTGACCAAGGCCAACATCCCTGTGGTGGGTTCTGCGGCAGATGTTCCATACTACTATGTTCCACCACAGCATCCTGTTGGTGCTCCTGGGATGATCATGGGGAAGCCAGTGGATCAAGCGACAATGTATGGTGCTCAACAGCCTCGGCCACCTATGGCTTTCATGCCCTGGGCTCAGTCCCAACCTCAACAGCCGCTGCCACAGCAGCAACAACAAACCCAACAACAGCAGACAGACAATTAG

Protein Analysis

269

Amino Acids

30.12

Weight (kDa)

5.84

Isoelectric Point (pI)

73.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 94 - 165 9.3e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 102 - 165 5.3e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 602, 761
AclWI GGATC 1 cut(s) 687
AcoI YGGCCR 2 cut(s) 48, 713
AcuI CTGAAG 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 38, 592, 593
AgsI TTSAA 3 cut(s) 295, 498, 550
AjnI CCWGG 2 cut(s) 652, 734
AluBI AGCT 5 cut(s) 241, 341, 368, 418, 488
AluI AGCT 5 cut(s) 241, 341, 368, 418, 488
Alw21I GWGCWC 2 cut(s) 652, 703
AlwI GGATC 1 cut(s) 687
AlwNI CAGNNNCTG 1 cut(s) 763
AoxI GGCC 3 cut(s) 48, 576, 713
AspLEI GCGC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 652, 703
BbvCI CCTCAGC 1 cut(s) 369
BccI CCATC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 654, 736
BclI TGATCA 1 cut(s) 660
BfaI CTAG 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 654, 736
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 654, 736
BmsI GCATC 1 cut(s) 646
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 369
BsaJI CCNNGG 5 cut(s) 573, 653, 710, 734, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 592, 593
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 377, 674
BseBI CCWGG 2 cut(s) 654, 736
BseDI CCNNGG 5 cut(s) 573, 653, 710, 734, 735
BseGI GGATG 5 cut(s) 129, 355, 582, 637, 663
BseLI CCNNNNNNNGG 3 cut(s) 38, 592, 593
BseMII CTCAG 2 cut(s) 360, 755
BseNI ACTGG 2 cut(s) 377, 674
BseRI GAGGAG 3 cut(s) 66, 472, 569
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 3 cut(s) 50, 578, 715
BsiHKAI GWGCWC 2 cut(s) 652, 703
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 2 cut(s) 573, 730
BslI CCNNNNNNNGG 3 cut(s) 38, 592, 593
BsmFI GGGAC 2 cut(s) 573, 730
BsnI GGCC 3 cut(s) 50, 578, 715
Bsp1286I GDGCHC 3 cut(s) 652, 703, 742
Bsp143I GATC 2 cut(s) 660, 679
BspACI CCGC 2 cut(s) 602, 761
BspANI GGCC 3 cut(s) 50, 578, 715
BspCNI CTCAG 2 cut(s) 361, 754
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 687
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 2 cut(s) 377, 674
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 5 cut(s) 573, 653, 710, 734, 735
BssMI GATC 2 cut(s) 660, 679
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 654, 736
Bst6I CTCTTC 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 369, 741
BstF5I GGATG 5 cut(s) 129, 355, 582, 637, 663
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 2 cut(s) 663, 682
BstMBI GATC 2 cut(s) 660, 679
BstMWI GCNNNNNNNGC 5 cut(s) 10, 199, 424, 769, 772
BstNI CCWGG 2 cut(s) 654, 736
BstNSI RCATGY 1 cut(s) 399
BstSCI CCNGG 2 cut(s) 652, 734
BsuRI GGCC 3 cut(s) 50, 578, 715
BtsCI GGATG 5 cut(s) 129, 355, 582, 637, 663
BtsIMutI CAGTG 2 cut(s) 384, 681
Cac8I GCNNGC 1 cut(s) 195
CaiI CAGNNNCTG 1 cut(s) 763
CciI TCATGA 1 cut(s) 333
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 50
CviAII CATG 5 cut(s) 334, 396, 432, 664, 730
DdeI CTNAG 2 cut(s) 369, 741
DpnI GATC 2 cut(s) 662, 681
DpnII GATC 2 cut(s) 660, 679
EaeI YGGCCR 2 cut(s) 48, 713
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 742
Eco32I GATATC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 652, 734
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 5 cut(s) 337, 399, 435, 667, 733
FaqI GGGAC 2 cut(s) 573, 730
FatI CATG 5 cut(s) 333, 395, 431, 663, 729
FbaI TGATCA 1 cut(s) 660
FokI GGATG 5 cut(s) 116, 362, 569, 624, 670
FriOI GRGCYC 1 cut(s) 742
FspBI CTAG 1 cut(s) 318
GlaI GCGC 1 cut(s) 428
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 50, 578, 715
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 429
Hin1II CATG 5 cut(s) 337, 399, 435, 667, 733
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HinfI GANTC 2 cut(s) 298, 436
HpaII CCGG 1 cut(s) 51
Hpy188I TCNGA 4 cut(s) 63, 99, 180, 356
Hpy188III TCNNGA 3 cut(s) 111, 295, 334
HpyAV CCTTC 2 cut(s) 144, 317
HpyCH4V TGCA 4 cut(s) 4, 268, 389, 485
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 199, 424, 769, 772
HpyF3I CTNAG 2 cut(s) 369, 741
Hsp92II CATG 5 cut(s) 337, 399, 435, 667, 733
HspAI GCGC 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 660
Kzo9I GATC 2 cut(s) 660, 679
LmnI GCTCC 5 cut(s) 79, 100, 379, 415, 655
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 568
MalI GATC 2 cut(s) 662, 681
MboI GATC 2 cut(s) 660, 679
MboII GAAGA 1 cut(s) 458
MhlI GDGCHC 3 cut(s) 652, 703, 742
MluCI AATT 3 cut(s) 166, 321, 805
MnlI CCTC 8 cut(s) 87, 340, 364, 450, 547, 550, 720, 762
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 587
MspA1I CMGCKG 3 cut(s) 368, 488, 763
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 654, 736
MvaI CCWGG 2 cut(s) 654, 736
MwoI GCNNNNNNNGC 5 cut(s) 10, 199, 424, 769, 772
NdeII GATC 2 cut(s) 660, 679
NlaIII CATG 5 cut(s) 337, 399, 435, 667, 733
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 568
NspI RCATGY 1 cut(s) 399
PagI TCATGA 1 cut(s) 333
PasI CCCWGGG 1 cut(s) 735
PfeI GAWTC 2 cut(s) 298, 436
Psp6I CCWGG 2 cut(s) 652, 734
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 2 cut(s) 652, 734
PspN4I GGNNCC 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 763
PvuII CAGCTG 2 cut(s) 368, 488
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 1 cut(s) 324
Sau3AI GATC 2 cut(s) 660, 679
ScrFI CCNGG 2 cut(s) 654, 736
SduI GDGCHC 3 cut(s) 652, 703, 742
SetI ASST 8 cut(s) 243, 249, 343, 370, 420, 490, 721, 754
SfaNI GCATC 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 587
Sse9I AATT 3 cut(s) 166, 321, 805
SsiI CCGC 2 cut(s) 602, 761
SspI AATATT 1 cut(s) 405
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 652, 734
StyI CCWWGG 1 cut(s) 573
TaqI TCGA 1 cut(s) 513
TasI AATT 3 cut(s) 166, 321, 805
TauI GCSGC 2 cut(s) 605, 763
TfiI GAWTC 2 cut(s) 298, 436
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 384, 681
TseFI GTSAC 1 cut(s) 568
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 3 cut(s) 350, 397, 718
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 384, 681
XceI RCATGY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.