RchiOBHm_Chr4g0388251

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
3407813 .. 3411818
4006 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36148

Sequence Viewer

Length: 2901 bp
ATGCCTGAAACGACCGTTACCACTGTGTCCTCAGATTTGGGGTGTCTTGATGTTCCTCTAACCATACACAAAAAGAGATGGCGTTCGGCGTTTGTCACCATTTACTGCTCTAGAGCCTTCCAGTCATTCTTCCCGTCAGTATCAGACAACGGTTTCAAACTAGACCAAAAAACCCTCACTCAGCTTGTGAAGGATAAAAGTCTTGATCAGCTCCAGGAGTTCGGAGGGGTTGAAGGAGTAGCATCAGCTCTCAAAACTGATACAGCGCTTGGAGTTTGCGGTGATGCTGATGTTGCACACCGACTCGAAGCATTTGGTTCGAATACATACAAGACAGAGGCAACCAAAAGGTTCTTCCATTTTGTGTGGGAAGCATGCCAAGACCTCACAATTTTCATTCTTATAGGCTGTGCTGTACTTTCTCTTGCTTTTGGCATCGTGGAGCATGGATTAAGAGAAGGTTGGAGTGATGGTGGAAGCATATTTCTCGCAGTTATTCTGGTGATTTCAGTGTCTGCCATAAGCAATTACAGGCAGCACAGAGAGTTTGACAAATTGTCAAAAGTCGGTAGCAATCTCCAAATTGAAGCTGTGAGAAATGGCGAGAGACAACAGATTTCAATATTCGAAATTGTGGTTGGAGATGTCATTTGCTTAAAGAATGGAGATCAAGTTCCAGCTGATGGGTTGCTCTTGGAGGGATATTCATTGGAAGTAGACGAATCAAGCATGACAGGGGAGAGTGACCATGTCGAAATCAACCAAAGCCAGAACCCCTTCTTGTTTTCCGGCACCAAAGTGGTTGAGGGGTATGCACAGATGCTTGTCACTTCCGTCGGCATGAACACAACATGGGGCGAAATGATGAGCCAAATCAGCAGTTATGCAAGTGAACAGACACATTTACAAGCTCGCATCCATGGGCTAGCCTCATCAATAGGTATAGTTGGTTTGCTAGTAGCTTTGTCAAATCTCATAGTCTCAAAGATATACTACTTCACCGGAAATACCAAGGATAGACATGGCAAGAAGGAGTTCAATGGGAGCAGAACCAAAGTTAATCGCATAATAATGGCCGTGGTTGGGATGGTAGGAACTGCAGTTACAATTGTTGTGGCTGCAATTCCAGAAGGTTTACCAGTCGCCATGACGATAACTTTTTGTTATGCTATGAAGAGAATGATGGCTGAAAAAGCAATGGTTAGGAAACTCTCTGCTTGTGAGATTATGGGCTCTGCTACCACCATTTGCACTGACAAAACAGGAACTCTCACGATGAACCAGATGAAGGTGGCCAAGTTCTGGATAGGTGAAAAGCCCGTGGAAGAAGCCTACTCATCAATTTCATCCCGTCATCTTAGCTTGATTCAAGAAGGGGTTGCTATGAACACAACCGGCTGTGCTTCTAGGCACATTTCAGGATCTGGATTTGAATTTTCAGGCAGTCCTACTGAAAAAGCCATTCTTTCATGGGCATCTCTGGAGCTGCATATGGACATGGAGAGATTGAAAAACAATTCCGTCATTCAAGATGTTGAAGCCTTCAATTCACACAGGAAACGAAGTGGTATTTTGATCAAGAGGAAGATAGACAACACAATGCAAGTACATTGGAAAGGAGCTGCAGAGGTGATACTAGCAATGTGCACCAGTTACCACAATGCCTCTGGAGATATAAAAGATATGGATGATGATGCAAAGAAAATACTTGAGCATATTATTCAAGGTATGGCAGCTAGTAGCCTCCGATGCATTGCACTTGCACACAAAGAAGTATATGCGGAGGAGCAAGTGGATCCAGAACACAAGACTTTGCTAAAAGACAATGGCTTGACCCTATTAGGACTTGTGGGTCTTAAAGATCCATGTCGGCCAGGAGTGAAGAAAGCTGTTGAGGACTGTCAACATGCAGGGGTCAACATCAAAATGATCACAGGGGACAACATTTTTACTGCAAAATCGATAGCCACAGAATGTGGGATACTCAAGCCTGAGGAGGACAAGACCAGTGATGCTGTGATAGAGGGTGTGCAATTTCGGAGCTACACACCAGAAGAGAGTGCAGAAAGTAGACAATATCCGTGTCATGGCAAGAAAGGTCATGTAGTTGCAGTGACTGGTGATGGCACAAATGATGCTCCTGCATTGAAAGAAGCGGACGTAGGTCTCTCTATGGGGATGCAAGGCACTGAAGTTGCGAAAGATAGCTCAGACATTGTGATCATGGATGACGATTTTGCTTCAGTGGCCACAGTTTTGATGTGGGGAAGATGTGTGTACAATAACATCCAAAAGTTCATTCAATTCCAACTCACTGTCAATGTTGCAGCTCTTGTGATCAACTTTGTGGCAGCAGTTTCAGCAAGTAAGGTGCCCTTAACAGCAGTTCAATTATTGTGGGTGAACTTGATTATGGACACACTCGGTGCTCTGGCCCTTGCGACAGACAAACCCACAAAAGAACTCATGGAGAATCCACCTGTGAGAAGAACGGAGCCTCTCATCACCAACATCATGTGGAGGAACCTTTTACCTCAAGCTATGTACCAGATAGCAGTAGTATTGACCTTACGATTCAGGGGCAACACAATCTTTGGTGTAGATGATCAAGTACAAGATACCTTGATCTTTAACACGTTTGTGCTCTGCCAGGTCTTCAATGAATTCAACGCAAGGAAGCTTGAGAAGAAGAATGTTTTCAAGGGACTGCTCACCAACAAAATCTTTTTGGGGATCATTGCATTAATAATCGTTCTGCAGCTGGTGATGGTGGAACTTTTGAACAAATATGCAGATACGGAGAGGTTGAATTGGGGGCAATGGGGTGTATGTCTTGGAATTGCGGCCATCTCTTGGCCACTCGGTTGGGTTGTCAAGTGTCTACCTTACCTGAATGCATAA

Protein Analysis

966

Amino Acids

106.01

Weight (kDa)

6.07

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 75 - 141 2.4e-11 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 197 - 292 2.4e-23 P-type ATPase actuator domain
Hydrolase PF00702 415 - 720 4.6e-10 haloacid dehalogenase-like hydrolase
Cation_ATPase PF13246 454 - 625 9.2e-27 P-type ATPase, cytoplasmic domain N
Cation_ATPase_C PF00689 791 - 960 6.4e-48 Cation transporting ATPase, C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000174)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22910
fragaria_vesca FvH4_4g01640 FvH4_4g01670 FvH4_4g01690 FvH4_4g01690 FvH4_4g01692 FvH4_4g06940
malus_domestica MD04G1223800.v1.1 MD12G1240600.v1.1 MD13G1201600.v1.1 MD15G1425600.v1.1 MD15G1425900.v1.1 MD15G1426000.v1.1 MD15G1426200.v1.1 MD15G1429900.v1.1 MD16G1186200.v1.1 MD16G1201500.v1.1 MD16G1201800.v1.1 MD16G1245900.v1.1
prunus_persica Prupe.1G023100_v2.0.a1 Prupe.1G023200_v2.0.a1 Prupe.1G023300_v2.0.a1 Prupe.1G023400_v2.0.a1 Prupe.2G086400_v2.0.a1
pyrus_communis pycom03g20400 pycom04g03220 pycom04g03230 pycom04g19720 pycom13g17500 pycom14g13160 pycom15g37720
rosa_chinensis RchiOBHm_Chr4g0385871 RchiOBHm_Chr4g0388251 RchiOBHm_Chr4g0388261 RchiOBHm_Chr4g0388291 RchiOBHm_Chr4g0388301 RchiOBHm_Chr4g0388321 RchiOBHm_Chr4g0388331 RchiOBHm_Chr4g0388341 RchiOBHm_Chr4g0388491 RchiOBHm_Chr4g0388501 RchiOBHm_Chr4g0388521 RchiOBHm_Chr4g0388541 RchiOBHm_Chr4g0388581 RchiOBHm_Chr4g0388591 RchiOBHm_Chr5g0038901 RchiOBHm_Chr5g0039001 RchiOBHm_Chr6g0264011
rosa_laevigata RLG00000003378 RLG00000003379 RLG00000010036 RLG00000010037 RLG00000010039 RLG00000010041 RLG00000010042 RLG00000010043 RLG00000010049 RLG00000010050 RLG00000010051 RLG00000010052 RLG00000010054 RLG00000010055 RLG00000010062 RLG00000010064 RLG00000010065 RLG00000010066 RLG00000010067 RLG00000010069 RLG00000010070 RLG00000010071 RLG00000014295 RLG00000033880
rosa_multiflora Rmu_co8110336.1_g000001 Rmu_sc0000533.1_g000070 Rmu_sc0000533.1_g000082 Rmu_sc0000753.1_g000013 Rmu_sc0000753.1_g000024 Rmu_sc0000753.1_g000027 Rmu_sc0000753.1_g000029 Rmu_sc0000753.1_g000030 Rmu_sc0000753.1_g000037 Rmu_sc0000753.1_g000048 Rmu_sc0001241.1_g000003 Rmu_sc0001241.1_g000020 Rmu_sc0001241.1_g000034 Rmu_sc0001241.1_g000045 Rmu_sc0001949.1_g000015 Rmu_sc0001949.1_g000020 Rmu_sc0001949.1_g000023 Rmu_sc0001949.1_g000028 Rmu_sc0002357.1_g000005 Rmu_sc0002357.1_g000017 Rmu_sc0002357.1_g000032 Rmu_sc0002357.1_g000035 Rmu_sc0002357.1_g000043 Rmu_sc0002694.1_g000002 Rmu_sc0004459.1_g000018 Rmu_sc0004773.1_g000011 Rmu_sc0006339.1_g000009 Rmu_sc0008728.1_g000008 Rmu_sc0012275.1_g000001
rosa_roxburghii Rroxscaffold_1G00042120 Rroxscaffold_2G00113240 Rroxscaffold_2G00131810 Rroxscaffold_4G00314870 Rroxscaffold_5G00334730 Rroxscaffold_5G00334750 Rroxscaffold_5G00334770 Rroxscaffold_5G00334790 Rroxscaffold_5G00334850 Rroxscaffold_5G00334970 Rroxscaffold_5G00335010 Rroxscaffold_5G00335030 Rroxscaffold_5G00335040
rosa_rugosa Rorug03G0301800 Rorug03G0316600 Rorug03G0316600 Rorug03G0316700 Rorug03G0316700 Rorug03G0316800.1 Rorug03G0317300 Rorug03G0317400 Rorug03G0318000 Rorug03G0318500 Rorug03G0318600 Rorug03G0318700 Rorug03G0319000 Rorug03G0319000 Rorug03G0319100 Rorug05G0175000 Rorug05G0175500
rosa_samantha Rh4CG007500 Rh4CG022300 Rh4CG022400 Rh4CG022600 Rh4CG022700 Rh4CG023500 Rh4CG023700 Rh4CG023900 Rh4CG024000 Rh4CG024600 Rh4CG025200 Rh4CG025300 Rh4CG025700 Rh4CG025800 Rh4CG025900 Rh4CG026000 Rh4CG026100 Rh4CG026200 Rh5BG266500 Rh6AG128500 Rh6DG110800
rosa_wichuraiana Rw0G009370 Rw4G000360 Rw4G001430 Rw4G001440 Rw4G001460 Rw4G001470 Rw4G001490 Rw4G001500 Rw4G001520 Rw4G001620 Rw4G001630 Rw4G001650 Rw4G001670 Rw5G024450 Rw5G024490 Rw6G011090 Rw6G011110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1851
AccB1I GGYRCC 2 cut(s) 791, 2371
AccB7I CCANNNNNTGG 3 cut(s) 683, 1302, 2853
AccI GTMKAC 3 cut(s) 717, 2071, 2881
AciI CCGC 4 cut(s) 279, 1781, 2156, 2843
AclWI GGATC 5 cut(s) 1429, 1790, 1803, 1856, 2741
AcoI YGGCCR 6 cut(s) 1074, 1293, 1871, 2247, 2844, 2855
AcsI RAATTY 2 cut(s) 1433, 2663
AcuI CTGAAG 2 cut(s) 2211, 2226
AdeI CACNNNGTG 1 cut(s) 2426
AfaI GTAC 5 cut(s) 417, 1608, 2279, 2546, 2613
AfeI AGCGCT 1 cut(s) 267
AfiI CCNNNNNNNGG 6 cut(s) 683, 1083, 1288, 1302, 2087, 2853
AflIII ACRYGT 1 cut(s) 2634
AhdI GACNNNNNGTC 1 cut(s) 556
AjnI CCWGG 3 cut(s) 213, 1873, 2649
AjuI GAANNNNNNNTTGG 6 cut(s) 338, 370, 621, 653, 2283, 2315
AleI CACNNNNGTG 2 cut(s) 797, 2639
AloI GAACNNNNNNTCC 2 cut(s) 657, 689
Alw21I GWGCWC 3 cut(s) 1649, 2431, 2646
Alw26I GTCTC 3 cut(s) 601, 985, 2171
Alw44I GTGCAC 1 cut(s) 1645
AlwI GGATC 5 cut(s) 1429, 1790, 1803, 1856, 2741
AlwNI CAGNNNCTG 3 cut(s) 515, 1424, 2117
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 7 cut(s) 1074, 1293, 1871, 2247, 2433, 2844, 2855
ApaLI GTGCAC 1 cut(s) 1645
ApeKI GCWGC 8 cut(s) 535, 1118, 1486, 1622, 1733, 2327, 2351, 2758
ApoI RAATTY 2 cut(s) 1433, 2663
AseI ATTAAT 1 cut(s) 2744
Asp700I GAANNNNTTC 3 cut(s) 776, 1034, 2696
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 2434
AsuII TTCGAA 2 cut(s) 320, 627
AsuNHI GCTAGC 1 cut(s) 925
AxyI CCTNAGG 1 cut(s) 1992
BaeGI GKGCMC 2 cut(s) 1649, 2376
BalI TGGCCA 3 cut(s) 1295, 2249, 2857
BamHI GGATCC 1 cut(s) 1795
BanI GGYRCC 2 cut(s) 791, 2371
BanII GRGCYC 1 cut(s) 1235
BbsI GAAGAC 1 cut(s) 2647
Bbv12I GWGCWC 3 cut(s) 1649, 2431, 2646
BbvI GCAGC 8 cut(s) 547, 1105, 1473, 1609, 1745, 2339, 2363, 2770
BccI CCATC 8 cut(s) 72, 464, 677, 1081, 1177, 2117, 2761, 2855
BceAI ACGGC 1 cut(s) 1061
BcgI CGANNNNNNTGC 4 cut(s) 300, 334, 469, 503
BciT130I CCWGG 3 cut(s) 215, 1875, 2651
BciVI GTATCC 1 cut(s) 1974
BclI TGATCA 6 cut(s) 205, 1575, 1929, 2220, 2337, 2605
BcoDI GTCTC 3 cut(s) 601, 985, 2171
BfaI CTAG 7 cut(s) 111, 161, 926, 956, 1407, 1637, 1737
BfmI CTRYAG 3 cut(s) 1098, 1623, 2756
BfoI RGCGCY 1 cut(s) 269
BfuI GTATCC 1 cut(s) 1974
BisI GCNGC 9 cut(s) 536, 1119, 1487, 1623, 1734, 2328, 2352, 2759, 2844
BlsI GCNGC 9 cut(s) 537, 1120, 1488, 1624, 1735, 2329, 2353, 2760, 2845
Bme1390I CCNGG 3 cut(s) 215, 1875, 2651
BmeRI GACNNNNNGTC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 2434
BmiI GGNNCC 5 cut(s) 793, 1797, 2373, 2496, 2525
BmrFI CCNGG 3 cut(s) 215, 1875, 2651
BmtI GCTAGC 1 cut(s) 929
BoxI GACNNNNGTC 1 cut(s) 2163
BpiI GAAGAC 1 cut(s) 2647
BpmI CTGGAG 3 cut(s) 197, 1502, 1689
Bpu14I TTCGAA 2 cut(s) 320, 627
BpuEI CTTGAG 4 cut(s) 1730, 1970, 2520, 2702
Bsa29I ATCGAT 1 cut(s) 1961
BsaI GGTCTC 1 cut(s) 2171
BsaJI CCNNGG 4 cut(s) 919, 1011, 1077, 1320
BsaWI WCCGGW 1 cut(s) 1001
BsaXI ACNNNNNCTCC 4 cut(s) 457, 487, 657, 687
Bsc4I CCNNNNNNNGG 6 cut(s) 683, 1083, 1288, 1302, 2087, 2853
Bse118I RCCGGY 1 cut(s) 1394
Bse1I ACTGG 5 cut(s) 121, 1139, 1650, 2007, 2122
Bse21I CCTNAGG 1 cut(s) 1992
Bse3DI GCAATG 5 cut(s) 1203, 1647, 1752, 2736, 2825
BseBI CCWGG 3 cut(s) 215, 1875, 2651
BseCI ATCGAT 1 cut(s) 1961
BseDI CCNNGG 4 cut(s) 919, 1011, 1077, 1320
BseGI GGATG 7 cut(s) 915, 1092, 1346, 1693, 2184, 2233, 2286
BseLI CCNNNNNNNGG 6 cut(s) 683, 1083, 1288, 1302, 2087, 2853
BseMI GCAATG 5 cut(s) 1203, 1647, 1752, 2736, 2825
BseMII CTCAG 4 cut(s) 45, 194, 1983, 2223
BseNI ACTGG 5 cut(s) 121, 1139, 1650, 2007, 2122
BseRI GAGGAG 2 cut(s) 1799, 2009
BseSI GKGCMC 2 cut(s) 1649, 2376
BseXI GCAGC 8 cut(s) 547, 1105, 1473, 1609, 1745, 2339, 2363, 2770
BsgI GTGCAG 1 cut(s) 2082
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 7 cut(s) 1076, 1295, 1873, 2249, 2435, 2846, 2857
BshNI GGYRCC 2 cut(s) 791, 2371
BshVI ATCGAT 1 cut(s) 1961
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 1649, 2431, 2646
BsiSI CCGG 3 cut(s) 789, 1002, 1395
BslFI GGGAC 2 cut(s) 1952, 2718
BslI CCNNNNNNNGG 6 cut(s) 683, 1083, 1288, 1302, 2087, 2853
BsmAI GTCTC 3 cut(s) 601, 985, 2171
BsmFI GGGAC 2 cut(s) 1952, 2718
BsmI GAATGC 1 cut(s) 2899
BsnI GGCC 7 cut(s) 1076, 1295, 1873, 2249, 2435, 2846, 2857
Bso31I GGTCTC 1 cut(s) 2171
Bsp119I TTCGAA 2 cut(s) 320, 627
Bsp1286I GDGCHC 5 cut(s) 1235, 1649, 2376, 2431, 2646
Bsp1407I TGTACA 1 cut(s) 2277
Bsp19I CCATGG 1 cut(s) 919
BspACI CCGC 4 cut(s) 279, 1781, 2156, 2843
BspANI GGCC 7 cut(s) 1076, 1295, 1873, 2249, 2435, 2846, 2857
BspCNI CTCAG 4 cut(s) 44, 193, 1984, 2222
BspDI ATCGAT 1 cut(s) 1961
BspLI GGNNCC 5 cut(s) 793, 1797, 2373, 2496, 2525
BspMAI CTGCAG 3 cut(s) 1102, 1627, 2760
BspOI GCTAGC 1 cut(s) 929
BspPI GGATC 5 cut(s) 1429, 1790, 1803, 1856, 2741
BspT104I TTCGAA 2 cut(s) 320, 627
BspT107I GGYRCC 2 cut(s) 791, 2371
BspTNI GGTCTC 1 cut(s) 2171
BsrDI GCAATG 5 cut(s) 1203, 1647, 1752, 2736, 2825
BsrFI RCCGGY 1 cut(s) 1394
BsrGI TGTACA 1 cut(s) 2277
BsrI ACTGG 5 cut(s) 121, 1139, 1650, 2007, 2122
BssAI RCCGGY 1 cut(s) 1394
BssECI CCNNGG 4 cut(s) 919, 1011, 1077, 1320
BssT1I CCWWGG 2 cut(s) 919, 1011
Bst2UI CCWGG 3 cut(s) 215, 1875, 2651
Bst4CI ACNGT 6 cut(s) 16, 25, 152, 1901, 2254, 2317
Bst6I CTCTTC 2 cut(s) 1169, 2049
BstAUI TGTACA 1 cut(s) 2277
BstBI TTCGAA 2 cut(s) 320, 627
BstC8I GCNNGC 3 cut(s) 376, 913, 927
BstDEI CTNAG 5 cut(s) 31, 180, 1358, 1992, 2209
BstDSI CCRYGG 3 cut(s) 919, 1077, 1320
BstF5I GGATG 7 cut(s) 915, 1092, 1346, 1693, 2184, 2233, 2286
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 1 cut(s) 268
BstMAI GTCTC 3 cut(s) 601, 985, 2171
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 6 cut(s) 293, 876, 1193, 1749, 2246, 2360
BstNI CCWGG 3 cut(s) 215, 1875, 2651
BstNSI RCATGY 2 cut(s) 378, 1910
BstPAI GACNNNNGTC 1 cut(s) 2163
BstSCI CCNGG 3 cut(s) 213, 1873, 2649
BstSFI CTRYAG 3 cut(s) 1098, 1623, 2756
BstSLI GKGCMC 2 cut(s) 1649, 2376
BstV1I GCAGC 8 cut(s) 547, 1105, 1473, 1609, 1745, 2339, 2363, 2770
BstV2I GAAGAC 1 cut(s) 2647
BstX2I RGATCY 3 cut(s) 1421, 1795, 1861
BstXI CCANNNNNNTGG 1 cut(s) 2865
BstYI RGATCY 3 cut(s) 1421, 1795, 1861
Bsu15I ATCGAT 1 cut(s) 1961
Bsu36I CCTNAGG 1 cut(s) 1992
BsuI GTATCC 1 cut(s) 1974
BsuRI GGCC 7 cut(s) 1076, 1295, 1873, 2249, 2435, 2846, 2857
BsuTUI ATCGAT 1 cut(s) 1961
BtgI CCRYGG 3 cut(s) 919, 1077, 1320
BtsCI GGATG 7 cut(s) 915, 1092, 1346, 1693, 2184, 2233, 2286
BtsI GCAGTG 1 cut(s) 2118
BtsIMutI CAGTG 8 cut(s) 21, 516, 1251, 2014, 2118, 2187, 2250, 2313
Cac8I GCNNGC 3 cut(s) 376, 913, 927
CaiI CAGNNNCTG 3 cut(s) 515, 1424, 2117
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 1394
Cfr13I GGNCC 1 cut(s) 2434
ClaI ATCGAT 1 cut(s) 1961
Csp6I GTAC 5 cut(s) 416, 1607, 2278, 2545, 2612
CspCI CAANNNNNGTGG 4 cut(s) 1095, 1130, 2378, 2413
CviQI GTAC 5 cut(s) 416, 1607, 2278, 2545, 2612
DdeI CTNAG 5 cut(s) 31, 180, 1358, 1992, 2209
DraIII CACNNNGTG 1 cut(s) 2426
DrdI GACNNNNNNGTC 1 cut(s) 1851
DriI GACNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 1851
EaeI YGGCCR 6 cut(s) 1074, 1293, 1871, 2247, 2844, 2855
Eam1104I CTCTTC 2 cut(s) 1169, 2049
Eam1105I GACNNNNNGTC 1 cut(s) 556
EarI CTCTTC 2 cut(s) 1169, 2049
Eco130I CCWWGG 2 cut(s) 919, 1011
Eco24I GRGCYC 1 cut(s) 1235
Eco31I GGTCTC 1 cut(s) 2171
Eco47III AGCGCT 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 2211, 2226
Eco81I CCTNAGG 1 cut(s) 1992
EcoRI GAATTC 1 cut(s) 2663
EcoRII CCWGG 3 cut(s) 213, 1873, 2649
EcoT14I CCWWGG 2 cut(s) 919, 1011
EcoT22I ATGCAT 2 cut(s) 1754, 2899
EcoT38I GRGCYC 1 cut(s) 1235
ErhI CCWWGG 2 cut(s) 919, 1011
FalI AAGNNNNNCTT 4 cut(s) 1449, 1481, 2360, 2392
FaqI GGGAC 2 cut(s) 1952, 2718
FauNDI CATATG 1 cut(s) 1491
FbaI TGATCA 6 cut(s) 205, 1575, 1929, 2220, 2337, 2605
FblI GTMKAC 3 cut(s) 717, 2071, 2881
Fnu4HI GCNGC 9 cut(s) 536, 1119, 1487, 1623, 1734, 2328, 2352, 2759, 2844
FokI GGATG 7 cut(s) 902, 1099, 1333, 1700, 2191, 2240, 2273
FriOI GRGCYC 1 cut(s) 1235
Fsp4HI GCNGC 9 cut(s) 536, 1119, 1487, 1623, 1734, 2328, 2352, 2759, 2844
FspBI CTAG 7 cut(s) 111, 161, 926, 956, 1407, 1637, 1737
GlaI GCGC 1 cut(s) 267
GluI GCNGC 9 cut(s) 536, 1119, 1487, 1623, 1734, 2328, 2352, 2759, 2844
GsuI CTGGAG 3 cut(s) 197, 1502, 1689
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 7 cut(s) 1076, 1295, 1873, 2249, 2435, 2846, 2857
HapII CCGG 3 cut(s) 789, 1002, 1395
HhaI GCGC 1 cut(s) 268
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 2 cut(s) 1904, 1918
HindII GTYRAC 2 cut(s) 1904, 1918
HindIII AAGCTT 1 cut(s) 2678
HinfI GANTC 5 cut(s) 303, 722, 1366, 2473, 2574
HpaII CCGG 3 cut(s) 789, 1002, 1395
Hpy188I TCNGA 6 cut(s) 34, 145, 224, 1748, 2040, 2212
Hpy99I CGWCG 1 cut(s) 839
HpyCH4III ACNGT 6 cut(s) 16, 25, 152, 1901, 2254, 2317
HpyCH4IV ACGT 2 cut(s) 2160, 2636
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 876, 1193, 1749, 2246, 2360
HpyF3I CTNAG 5 cut(s) 31, 180, 1358, 1992, 2209
HpySE526I ACGT 2 cut(s) 2160, 2636
HspAI GCGC 1 cut(s) 266
Ksp22I TGATCA 6 cut(s) 205, 1575, 1929, 2220, 2337, 2605
LmnI GCTCC 9 cut(s) 216, 442, 1044, 1483, 1619, 1786, 2040, 2143, 2494
Lsp1109I GCAGC 8 cut(s) 547, 1105, 1473, 1609, 1745, 2339, 2363, 2770
MaeI CTAG 7 cut(s) 111, 161, 926, 956, 1407, 1637, 1737
MaeII ACGT 2 cut(s) 2160, 2636
MaeIII GTNAC 7 cut(s) 16, 94, 743, 826, 1102, 1652, 2113
MfeI CAATTG 1 cut(s) 1107
MflI RGATCY 3 cut(s) 1421, 1795, 1861
MhlI GDGCHC 5 cut(s) 1235, 1649, 2376, 2431, 2646
MlsI TGGCCA 3 cut(s) 1295, 2249, 2857
MluNI TGGCCA 3 cut(s) 1295, 2249, 2857
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 3 cut(s) 443, 619, 2332
Mox20I TGGCCA 3 cut(s) 1295, 2249, 2857
Mph1103I ATGCAT 2 cut(s) 1754, 2899
MroXI GAANNNNTTC 3 cut(s) 776, 1034, 2696
MscI TGGCCA 3 cut(s) 1295, 2249, 2857
MseI TTAA 7 cut(s) 452, 656, 1059, 1857, 2378, 2631, 2744
MslI CAYNNNNRTG 4 cut(s) 797, 1070, 1925, 2639
Msp20I TGGCCA 3 cut(s) 1295, 2249, 2857
MspA1I CMGCKG 2 cut(s) 680, 2761
MspI CCGG 3 cut(s) 789, 1002, 1395
MspR9I CCNGG 3 cut(s) 215, 1875, 2651
MunI CAATTG 1 cut(s) 1107
Mva1269I GAATGC 1 cut(s) 2899
MvaI CCWGG 3 cut(s) 215, 1875, 2651
MwoI GCNNNNNNNGC 6 cut(s) 293, 876, 1193, 1749, 2246, 2360
NcoI CCATGG 1 cut(s) 919
NdeI CATATG 1 cut(s) 1491
NheI GCTAGC 1 cut(s) 925
NlaIV GGNNCC 5 cut(s) 793, 1797, 2373, 2496, 2525
NmuCI GTSAC 4 cut(s) 94, 743, 826, 2113
NsiI ATGCAT 2 cut(s) 1754, 2899
NspI RCATGY 2 cut(s) 378, 1910
NspV TTCGAA 2 cut(s) 320, 627
OliI CACNNNNGTG 2 cut(s) 797, 2639
PaeI GCATGC 1 cut(s) 378
PctI GAATGC 1 cut(s) 2899
PdmI GAANNNNTTC 3 cut(s) 776, 1034, 2696
PfeI GAWTC 4 cut(s) 722, 1366, 2473, 2574
PflFI GACNNNGTC 1 cut(s) 749
PflMI CCANNNNNTGG 3 cut(s) 683, 1302, 2853
PfoI TCCNGGA 1 cut(s) 213
PkrI GCNGC 9 cut(s) 537, 1120, 1488, 1624, 1735, 2329, 2353, 2760, 2845
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
PshAI GACNNNNGTC 1 cut(s) 2163
PshBI ATTAAT 1 cut(s) 2744
Psp6I CCWGG 3 cut(s) 213, 1873, 2649
PspGI CCWGG 3 cut(s) 213, 1873, 2649
PspN4I GGNNCC 5 cut(s) 793, 1797, 2373, 2496, 2525
PspPI GGNCC 1 cut(s) 2434
PsrI GAACNNNNNNTAC 2 cut(s) 1087, 1119
PstI CTGCAG 3 cut(s) 1102, 1627, 2760
PstNI CAGNNNCTG 3 cut(s) 515, 1424, 2117
PsuI RGATCY 3 cut(s) 1421, 1795, 1861
PsyI GACNNNGTC 1 cut(s) 749
PvuII CAGCTG 2 cut(s) 680, 2761
RsaI GTAC 5 cut(s) 417, 1608, 2279, 2546, 2613
RsaNI GTAC 5 cut(s) 416, 1607, 2278, 2545, 2612
RseI CAYNNNNRTG 4 cut(s) 797, 1070, 1925, 2639
SaqAI TTAA 7 cut(s) 452, 656, 1059, 1857, 2378, 2631, 2744
SatI GCNGC 9 cut(s) 536, 1119, 1487, 1623, 1734, 2328, 2352, 2759, 2844
Sau96I GGNCC 1 cut(s) 2434
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 3 cut(s) 215, 1875, 2651
SduI GDGCHC 5 cut(s) 1235, 1649, 2376, 2431, 2646
SfcI CTRYAG 3 cut(s) 1098, 1623, 2756
SfuI TTCGAA 2 cut(s) 320, 627
SmiMI CAYNNNNRTG 4 cut(s) 797, 1070, 1925, 2639
SmlI CTYRAG 4 cut(s) 1709, 1985, 2535, 2681
SmoI CTYRAG 4 cut(s) 1709, 1985, 2535, 2681
SphI GCATGC 1 cut(s) 378
SsiI CCGC 4 cut(s) 279, 1781, 2156, 2843
SspI AATATT 1 cut(s) 624
SspMI CTAG 7 cut(s) 111, 161, 926, 956, 1407, 1637, 1737
StyD4I CCNGG 3 cut(s) 213, 1873, 2649
StyI CCWWGG 2 cut(s) 919, 1011
TaaI ACNGT 6 cut(s) 16, 25, 152, 1901, 2254, 2317
TaiI ACGT 2 cut(s) 2163, 2639
TaqI TCGA 5 cut(s) 306, 320, 627, 753, 1961
TatI WGTACW 4 cut(s) 415, 1606, 2277, 2611
TauI GCSGC 1 cut(s) 2846
TfiI GAWTC 4 cut(s) 722, 1366, 2473, 2574
Tru1I TTAA 7 cut(s) 452, 656, 1059, 1857, 2378, 2631, 2744
Tru9I TTAA 7 cut(s) 452, 656, 1059, 1857, 2378, 2631, 2744
TscAI CASTG 8 cut(s) 28, 516, 1258, 2014, 2118, 2194, 2250, 2320
TseFI GTSAC 4 cut(s) 94, 743, 826, 2113
TseI GCWGC 8 cut(s) 535, 1118, 1486, 1622, 1733, 2327, 2351, 2758
Tsp45I GTSAC 4 cut(s) 94, 743, 826, 2113
TspGWI ACGGA 5 cut(s) 823, 1510, 2070, 2507, 2813
TspRI CASTG 8 cut(s) 28, 516, 1258, 2014, 2118, 2194, 2250, 2320
Tth111I GACNNNGTC 1 cut(s) 749
Van91I CCANNNNNTGG 3 cut(s) 683, 1302, 2853
VneI GTGCAC 1 cut(s) 1645
VspI ATTAAT 1 cut(s) 2744
XapI RAATTY 2 cut(s) 1433, 2663
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 2 cut(s) 378, 1910
XcmI CCANNNNNNNNNTGG 1 cut(s) 1664
XmiI GTMKAC 3 cut(s) 717, 2071, 2881
XmnI GAANNNNTTC 3 cut(s) 776, 1034, 2696
XspI CTAG 7 cut(s) 111, 161, 926, 956, 1407, 1637, 1737
Zsp2I ATGCAT 2 cut(s) 1754, 2899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.